starting build "0325ea5f-059b-4d09-b695-0fa5828523b8" FETCHSOURCE BUILD Starting Step #0 Step #0: Already have image (with digest): gcr.io/cloud-builders/git Step #0: Cloning into 'oss-fuzz'... Finished Step #0 Starting Step #1 Step #1: Already have image (with digest): gcr.io/cloud-builders/docker Step #1: Sending build context to Docker daemon 5.12kB Step #1: Step 1/6 : FROM gcr.io/oss-fuzz-base/base-builder Step #1: latest: Pulling from oss-fuzz-base/base-builder Step #1: b549f31133a9: Pulling fs layer Step #1: 800687449569: Pulling fs layer Step #1: 67cc84ed39bf: Pulling fs layer Step #1: 33c4464df317: Pulling fs layer Step #1: 7a3d59ffed63: Pulling fs layer Step #1: bc24bccd8f7c: Pulling fs layer Step #1: 18d20619fb8d: Pulling fs layer Step #1: 0ec212d79142: Pulling fs layer Step #1: 0d731e844f5b: Pulling fs layer Step #1: 03e6d4298870: Pulling fs layer Step #1: 9cb6c9480ffe: Pulling fs layer Step #1: 636367483a85: Pulling fs layer Step #1: ab160a08f40f: Pulling fs layer Step #1: d56fb1501120: Pulling fs layer Step #1: 7a3d59ffed63: Waiting Step #1: 6e5ee80d4b76: Pulling fs layer Step #1: 069b70ca1828: Pulling fs layer Step #1: 082a5c4ba783: Pulling fs layer Step #1: 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#1: Hit:1 http://security.ubuntu.com/ubuntu focal-security InRelease Step #1: Hit:2 http://archive.ubuntu.com/ubuntu focal InRelease Step #1: Get:3 http://archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] Step #1: Hit:4 http://archive.ubuntu.com/ubuntu focal-backports InRelease Step #1: Fetched 114 kB in 7s (17.2 kB/s) Step #1: Reading package lists... Step #1:  Step #1: WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Step #1: Step #1: Reading package lists... Step #1: Building dependency tree... Step #1: Reading state information... Step #1: The following additional packages will be installed: Step #1: cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1: Suggested packages: Step #1: cmake-doc ninja-build lrzip Step #1: The following NEW packages will be installed: Step #1: cmake cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1: 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Step #1: Need to get 15.0 MB of archives. Step #1: After this operation, 65.0 MB of additional disk space will be used. Step #1: Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libicu66 amd64 66.1-2ubuntu2.1 [8515 kB] Step #1: Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2 amd64 2.9.10+dfsg-5ubuntu0.20.04.6 [640 kB] Step #1: Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1 amd64 1.34.2-1ubuntu1.3 [80.8 kB] Step #1: Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake-data all 3.16.3-1ubuntu1.20.04.1 [1613 kB] Step #1: Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libarchive13 amd64 3.4.0-2ubuntu1.2 [327 kB] Step #1: Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] Step #1: Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] Step #1: Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake amd64 3.16.3-1ubuntu1.20.04.1 [3668 kB] Step #1: debconf: delaying package configuration, since apt-utils is not installed Step #1: Fetched 15.0 MB in 1s (28.9 MB/s) Step #1: Selecting previously unselected package libicu66:amd64. Step #1: (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17382 files and directories currently installed.) Step #1: Preparing to unpack .../0-libicu66_66.1-2ubuntu2.1_amd64.deb ... Step #1: Unpacking libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1: Selecting previously unselected package libxml2:amd64. Step #1: Preparing to unpack .../1-libxml2_2.9.10+dfsg-5ubuntu0.20.04.6_amd64.deb ... Step #1: Unpacking libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.6) ... Step #1: Selecting previously unselected package libuv1:amd64. Step #1: Preparing to unpack .../2-libuv1_1.34.2-1ubuntu1.3_amd64.deb ... Step #1: Unpacking libuv1:amd64 (1.34.2-1ubuntu1.3) ... Step #1: Selecting previously unselected package cmake-data. Step #1: Preparing to unpack .../3-cmake-data_3.16.3-1ubuntu1.20.04.1_all.deb ... Step #1: Unpacking cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1: Selecting previously unselected package libarchive13:amd64. Step #1: Preparing to unpack .../4-libarchive13_3.4.0-2ubuntu1.2_amd64.deb ... Step #1: Unpacking libarchive13:amd64 (3.4.0-2ubuntu1.2) ... Step #1: Selecting previously unselected package libjsoncpp1:amd64. Step #1: Preparing to unpack .../5-libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... Step #1: Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1: Selecting previously unselected package librhash0:amd64. Step #1: Preparing to unpack .../6-librhash0_1.3.9-1_amd64.deb ... Step #1: Unpacking librhash0:amd64 (1.3.9-1) ... Step #1: Selecting previously unselected package cmake. Step #1: Preparing to unpack .../7-cmake_3.16.3-1ubuntu1.20.04.1_amd64.deb ... Step #1: Unpacking cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1: Setting up libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1: Setting up libuv1:amd64 (1.34.2-1ubuntu1.3) ... Step #1: Setting up librhash0:amd64 (1.3.9-1) ... Step #1: Setting up cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1: Setting up libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.6) ... Step #1: Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1: Setting up libarchive13:amd64 (3.4.0-2ubuntu1.2) ... Step #1: Setting up cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1: Processing triggers for libc-bin (2.31-0ubuntu9.12) ... Step #1: Removing intermediate container e2812b455681 Step #1: ---> 2469081122c8 Step #1: Step 3/6 : RUN git clone --depth 1 https://github.com/openbabel/openbabel.git Step #1: ---> Running in df514319a62a Step #1: Cloning into 'openbabel'... 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Step #1: Removing intermediate container df514319a62a Step #1: ---> 7a0fee895625 Step #1: Step 4/6 : COPY build.sh $SRC Step #1: ---> 414ad3161a74 Step #1: Step 5/6 : WORKDIR $SRC/openbabel Step #1: ---> Running in d23f8aa56d0a Step #1: Removing intermediate container d23f8aa56d0a Step #1: ---> 3d22502add21 Step #1: Step 6/6 : ENV OLD_LLVMPASS 1 Step #1: ---> Running in 2df68db14d71 Step #1: Removing intermediate container 2df68db14d71 Step #1: ---> 171572685e6e Step #1: Successfully built 171572685e6e Step #1: Successfully tagged gcr.io/oss-fuzz/openbabel:latest Finished Step #1 Starting Step #2 - "srcmap" Step #2 - "srcmap": Already have image: gcr.io/oss-fuzz/openbabel Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + SRCMAP=/tmp/filezTPxAO Step #2 - "srcmap": + echo '{}' Step #2 - "srcmap": + PATHS_TO_SCAN=/src Step #2 - "srcmap": + [[ c++ == \g\o ]] Step #2 - "srcmap": ++ find /src -name .git -type d Step #2 - "srcmap": + for DOT_GIT_DIR in $(find $PATHS_TO_SCAN -name ".git" -type d) Step #2 - "srcmap": ++ dirname /src/openbabel/.git Step #2 - "srcmap": + GIT_DIR=/src/openbabel Step #2 - "srcmap": + cd /src/openbabel Step #2 - "srcmap": ++ git config --get remote.origin.url Step #2 - "srcmap": + GIT_URL=https://github.com/openbabel/openbabel.git Step #2 - "srcmap": ++ git rev-parse HEAD Step #2 - "srcmap": + GIT_REV=bcb790049bf43415a0b99adf725249c3f4da02bf Step #2 - "srcmap": + jq_inplace /tmp/filezTPxAO '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "bcb790049bf43415a0b99adf725249c3f4da02bf" }' Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + F=/tmp/fileWX8yvc Step #2 - "srcmap": + cat /tmp/filezTPxAO Step #2 - "srcmap": + jq '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "bcb790049bf43415a0b99adf725249c3f4da02bf" }' Step #2 - "srcmap": + mv /tmp/fileWX8yvc /tmp/filezTPxAO Step #2 - "srcmap": ++ find /src -name .svn -type d Step #2 - "srcmap": ++ find /src -name .hg -type d Step #2 - "srcmap": + '[' '' '!=' '' ']' Step #2 - "srcmap": + cat /tmp/filezTPxAO Step #2 - "srcmap": + rm /tmp/filezTPxAO Step #2 - "srcmap": { Step #2 - "srcmap": "/src/openbabel": { Step #2 - "srcmap": "type": "git", Step #2 - "srcmap": "url": "https://github.com/openbabel/openbabel.git", Step #2 - "srcmap": "rev": "bcb790049bf43415a0b99adf725249c3f4da02bf" Step #2 - "srcmap": } Step #2 - "srcmap": } Finished Step #2 - "srcmap" Starting Step #3 - "compile-afl-address-x86_64" Step #3 - "compile-afl-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": Copying precompiled AFL++ Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": AFL++ target compilation setup: Step #3 - "compile-afl-address-x86_64": AFL_IGNORE_UNKNOWN_ENVS=1 Step #3 - "compile-afl-address-x86_64": AFL_QUIET=1 Step #3 - "compile-afl-address-x86_64": AFL_IGNORE_PROBLEMS=1 Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": done. Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": CC=/src/aflplusplus/afl-clang-fast Step #3 - "compile-afl-address-x86_64": CXX=/src/aflplusplus/afl-clang-fast++ Step #3 - "compile-afl-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope Step #3 - "compile-afl-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -stdlib=libc++ Step #3 - "compile-afl-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": + mkdir build Step #3 - "compile-afl-address-x86_64": + cd build Step #3 - "compile-afl-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #3 - "compile-afl-address-x86_64": -- The C compiler identification is Clang 15.0.0 Step #3 - "compile-afl-address-x86_64": -- The CXX compiler identification is Clang 15.0.0 Step #3 - "compile-afl-address-x86_64": -- Detecting C compiler ABI info Step #3 - "compile-afl-address-x86_64": -- Detecting C compiler ABI info - done Step #3 - "compile-afl-address-x86_64": -- Check for working C compiler: /src/aflplusplus/afl-clang-fast - skipped Step #3 - "compile-afl-address-x86_64": -- Detecting C compile features Step #3 - "compile-afl-address-x86_64": -- Detecting C compile features - done Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compiler ABI info Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compiler ABI info - done Step #3 - "compile-afl-address-x86_64": -- Check for working CXX compiler: /src/aflplusplus/afl-clang-fast++ - skipped Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compile features Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compile features - done Step #3 - "compile-afl-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #3 - "compile-afl-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #3 - "compile-afl-address-x86_64": of CMake. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #3 - "compile-afl-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #3 - "compile-afl-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #3 - "compile-afl-address-x86_64": behavior and not rely on setting a policy to OLD. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Using included inchi library. Step #3 - "compile-afl-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #3 - "compile-afl-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #3 - "compile-afl-address-x86_64": libxml2 not found - disabling CML support! Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #3 - "compile-afl-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #3 - "compile-afl-address-x86_64": -- Looking for conio.h Step #3 - "compile-afl-address-x86_64": -- Looking for conio.h - not found Step #3 - "compile-afl-address-x86_64": -- Looking for sys/time.h Step #3 - "compile-afl-address-x86_64": -- Looking for sys/time.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for time.h Step #3 - "compile-afl-address-x86_64": -- Looking for time.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for strings.h Step #3 - "compile-afl-address-x86_64": -- Looking for strings.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for rpc/xdr.h Step #3 - "compile-afl-address-x86_64": -- Looking for rpc/xdr.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for regex.h Step #3 - "compile-afl-address-x86_64": -- Looking for regex.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for C++ include sstream Step #3 - "compile-afl-address-x86_64": -- Looking for C++ include sstream - found Step #3 - "compile-afl-address-x86_64": -- Looking for rint Step #3 - "compile-afl-address-x86_64": -- Looking for rint - found Step #3 - "compile-afl-address-x86_64": -- Looking for snprintf Step #3 - "compile-afl-address-x86_64": -- Looking for snprintf - found Step #3 - "compile-afl-address-x86_64": -- Looking for sranddev Step #3 - "compile-afl-address-x86_64": -- Looking for sranddev - not found Step #3 - "compile-afl-address-x86_64": -- Looking for strcasecmp Step #3 - "compile-afl-address-x86_64": -- Looking for strcasecmp - found Step #3 - "compile-afl-address-x86_64": -- Looking for strncasecmp Step #3 - "compile-afl-address-x86_64": -- Looking for strncasecmp - found Step #3 - "compile-afl-address-x86_64": -- Looking for dlopen in dl Step #3 - "compile-afl-address-x86_64": -- Looking for dlopen in dl - found Step #3 - "compile-afl-address-x86_64": -- Looking for sys/types.h Step #3 - "compile-afl-address-x86_64": -- Looking for sys/types.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for stdint.h Step #3 - "compile-afl-address-x86_64": -- Looking for stdint.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for stddef.h Step #3 - "compile-afl-address-x86_64": -- Looking for stddef.h - found Step #3 - "compile-afl-address-x86_64": -- Check size of clock_t Step #3 - "compile-afl-address-x86_64": -- Check size of clock_t - done Step #3 - "compile-afl-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #3 - "compile-afl-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #3 - "compile-afl-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #3 - "compile-afl-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #3 - "compile-afl-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #3 - "compile-afl-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #3 - "compile-afl-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-1.1.0. Step #3 - "compile-afl-address-x86_64": -- JSON formats will be supported. Using RapidJSON 1.1.0 at /src/openbabel/external/rapidjson-1.1.0/include Step #3 - "compile-afl-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #3 - "compile-afl-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #3 - "compile-afl-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #3 - "compile-afl-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #3 - "compile-afl-address-x86_64": -- Found Threads: TRUE Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #3 - "compile-afl-address-x86_64": -- Looking for getopt Step #3 - "compile-afl-address-x86_64": -- Looking for getopt - found Step #3 - "compile-afl-address-x86_64": -- GUI will not be built Step #3 - "compile-afl-address-x86_64": -- Found PythonInterp: /usr/local/bin/python3.8 (found version "3.8.3") Step #3 - "compile-afl-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #3 - "compile-afl-address-x86_64": Compatibility with CMake < 2.8.12 will be removed from a future version of Step #3 - "compile-afl-address-x86_64": CMake. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #3 - "compile-afl-address-x86_64": CMake that the project does not need compatibility with older versions. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Configuring done Step #3 - "compile-afl-address-x86_64": -- Generating done Step #3 - "compile-afl-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #3 - "compile-afl-address-x86_64": ++ nproc Step #3 - "compile-afl-address-x86_64": + make -j 32 Step #3 - "compile-afl-address-x86_64": [ 0%] Generating atomtyp.h Step #3 - "compile-afl-address-x86_64": [ 0%] Generating bondtyp.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating phmodeldata.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating resdata.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating torlib.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating types.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating atomizationenergies.h Step #3 - "compile-afl-address-x86_64": [ 2%] Generating spacegroups.h Step #3 - "compile-afl-address-x86_64": [ 2%] Generating ringtyp.h Step #3 - "compile-afl-address-x86_64": [ 2%] Built target data_headers Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #3 - "compile-afl-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #3 - "compile-afl-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #3 - "compile-afl-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #3 - "compile-afl-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #3 - "compile-afl-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #3 - "compile-afl-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #3 - "compile-afl-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #3 - "compile-afl-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #3 - "compile-afl-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #3 - "compile-afl-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #3 - "compile-afl-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #3 - "compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #3 - "compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #3 - "compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #3 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #3 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #3 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #3 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #3 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": _ival=nullptr; Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (!IsNearZero(val[2])) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11 ^ Step #3 - "compile-afl-address-x86_64": : warning: '_ival' is deprecated [-Wdeprecated-declarations]/src/openbabel/build/include/openbabel/babelconfig.h Step #3 - "compile-afl-address-x86_64": : if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:10538:5:38: note: : '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": :29: #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": note: ^ Step #3 - "compile-afl-address-x86_64": expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #3 - "compile-afl-address-x86_64": if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(v1.length(), 1.0e-3) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": || IsNearZero(v2.length(), 1.0e-3)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rab = OBForceField::VectorLengthDerivative(da, db); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": combinations *= rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rotorKeys.AddRotor(rotor->GetResolution().size()); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp: #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]310: Step #3 - "compile-afl-address-x86_64": 19: ^  Step #3 - "compile-afl-address-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (bond2 == VZero || v1 == VZero) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (bond2 == VZero || v1 == VZero) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()")[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: /src/openbabel/src/builder.cppexpanded from macro 'OB_DEPRECATED_MSG':359 Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h: Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": 273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:361/src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": combinations *= rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": :26: /src/openbabel/include/openbabel/rotor.h:warning: 449:5'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]: Step #3 - "compile-afl-address-x86_64":  else if (bond2 == VZero)note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") ^ Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64":  ^/src/openbabel/include/openbabel/math/vector3.h Step #3 - "compile-afl-address-x86_64": :273:5: note: /src/openbabel/build/include/openbabel/babelconfig.h'operator==' has been explicitly marked deprecated here:38 Step #3 - "compile-afl-address-x86_64": :38 OB_DEPRECATED_MSG("Use vector3::IsApprox() instead."): Step #3 - "compile-afl-address-x86_64":  ^note: Step #3 - "compile-afl-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]:38:38 Step #3 - "compile-afl-address-x86_64": : ^ Step #3 - "compile-afl-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: /src/openbabel/src/forcefield.cpp'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": : ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:162238:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": :8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: /src/openbabel/src/builder.cpp'SetFixAtoms' has been explicitly marked deprecated here:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64":  OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: /src/openbabel/build/include/openbabel/babelconfig.h'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": :38 else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": :38: /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:note: 38expanded from macro 'OB_DEPRECATED_MSG':38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64":  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": combinations *= rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64":  ^/src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  if (bond1 == VZero)/src/openbabel/build/include/openbabel/babelconfig.h Step #3 - "compile-afl-address-x86_64": :38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64":  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1685:43:  OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": warning:  ^ Step #3 - "compile-afl-address-x86_64": 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64":  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h ^: Step #3 - "compile-afl-address-x86_64": 449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNear(worstE, bestE, 1.0e-3)) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": weight = 1 / rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp: ^469 Step #3 - "compile-afl-address-x86_64": :23: /src/openbabel/include/openbabel/rotor.h:warning: 449:5'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]: Step #3 - "compile-afl-address-x86_64": note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64":  OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h ^: Step #3 - "compile-afl-address-x86_64": 273:5: /src/openbabel/build/include/openbabel/babelconfig.h:38note: :38'operator==' has been explicitly marked deprecated here: Step #3 - "compile-afl-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64":  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h ^: Step #3 - "compile-afl-address-x86_64": 38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h/src/openbabel/src/builder.cpp::449473::528:: note: warning: 'GetResolution' has been explicitly marked deprecated here'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  ^ ^ Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: /src/openbabel/include/openbabel/math/vector3.h:273note: :5expanded from macro 'OB_DEPRECATED_MSG': Step #3 - "compile-afl-address-x86_64": note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64":  OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: /src/openbabel/src/forcefield.cpp:2420:9: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": if (IsNearZero(scale)) { else if (bond4 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h/src/openbabel/include/openbabel/obutil.h::197:3273:: note: 5:'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64":  #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: /src/openbabel/src/builder.cppnote: :expanded from macro 'OB_DEPRECATED_MSG'533 Step #3 - "compile-afl-address-x86_64": :23 #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^: Step #3 - "compile-afl-address-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]/src/openbabel/src/forcefield.cpp Step #3 - "compile-afl-address-x86_64": else if (bond4 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": :2657/src/openbabel/include/openbabel/math/vector3.h:273:5:: 11note: 'operator==' has been explicitly marked deprecated here: Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": warning: /src/openbabel/build/include/openbabel/babelconfig.h:38:38: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp ^: Step #3 - "compile-afl-address-x86_64": 566:28: warning: /src/openbabel/include/openbabel/obutil.h:189'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]: Step #3 - "compile-afl-address-x86_64": 3 else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": : note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if (bond4 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if (bond5 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNear(e_n2, _e_n1, _econv) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNear(e_n2, _e_n1, _econv) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": mol.GetFirstAtom()->GetHyb(); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2786:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (atom->GetVector() != VZero) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2801:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (!hasX && !IsNearZero(atom->x())) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (!hasY && !IsNearZero(atom->y())) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2824:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (!hasX && !IsNearZero(atom->x())) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (!hasY && !IsNearZero(atom->y())) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (!hasZ && !IsNearZero(atom->z())) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(length)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(length)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(length_ji)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(length_jk)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(length_jl)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(length_ji)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(length_jk)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(length_jl)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:/src/openbabel/include/openbabel/obutil.h:1971427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (bond1 == VZero) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:3250:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ((*ringit)->PathSize() == 5) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": :3: note: /src/openbabel/src/mol.cpp:3272:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": else if ((*ringit)->PathSize() == 6) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:3341:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": loopSize = (*ringit)->PathSize(); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #3 - "compile-afl-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": _vres.push_back(rotor->GetResolution()); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See HasFixedBonds()") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rotor->SetNumCoords(mol.NumAtoms()*3); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("See HasFixedBonds()") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rotor->SetEvalAtoms(eval); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rotor->SetDelta(delta); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Has no effect.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (!IsNearZero(pcharge)) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use vector version instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #3 - "compile-afl-address-x86_64": 5 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": gd->GetOriginVector(origin); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": quadrupole.Set(i[0], i[1], value); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": quadrupole.Set(i[1], i[0], value); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #3 - "compile-afl-address-x86_64": else if (vs[0][0] == '2') Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #3 - "compile-afl-address-x86_64": 34 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #3 - "compile-afl-address-x86_64": 51 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #3 - "compile-afl-address-x86_64": switch(pRD->ReactionType) Step #3 - "compile-afl-address-x86_64":  ^~~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #3 - "compile-afl-address-x86_64": switch(pRD->ReactionType) Step #3 - "compile-afl-address-x86_64":  ^~~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #3 - "compile-afl-address-x86_64": string path = (found == string::npos) ? "" : path.substr(0, found); Step #3 - "compile-afl-address-x86_64":  ~~~~ ^~~~ Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": gd->GetOriginVector(origin); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #3 - "compile-afl-address-x86_64": 9 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": OBAtom *atm = pmol->GetFirstAtom(); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": switch (chirality) { Step #3 - "compile-afl-address-x86_64":  ^~~~~~~~~ Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64":  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64":  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64":  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64":  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64":  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64":  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #3 - "compile-afl-address-x86_64":  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64":  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": (float)maxint[1] - (float)minint[1] >= MAXABS || Step #3 - "compile-afl-address-x86_64":  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64":  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #3 - "compile-afl-address-x86_64":  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64":  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #3 - "compile-afl-address-x86_64": while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #3 - "compile-afl-address-x86_64": while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rab = OBForceField::VectorLengthDerivative(da, db); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": pFF->UpdateCoordinates(molCopy); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": pFF->UpdateCoordinates(molCopy); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #3 - "compile-afl-address-x86_64": 6 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #3 - "compile-afl-address-x86_64": static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #3 - "compile-afl-address-x86_64":  ~~~~~~~~~~~ ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #3 - "compile-afl-address-x86_64": static const float dashpattern[] = {5., 5.}; Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #3 - "compile-afl-address-x86_64": static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #3 - "compile-afl-address-x86_64": 9 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #3 - "compile-afl-address-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #3 - "compile-afl-address-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNearZero(v1.length(), 1.0e-3) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": || IsNearZero(v2.length(), 1.0e-3)) { Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 4 warnings generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 76%] Linking CXX static library libopenbabel.a Step #3 - "compile-afl-address-x86_64": [ 76%] Built target openbabel Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #3 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": // / \ Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38/src/openbabel/test/stereoperceptiontest.cpp:270:21: : warning: note: expanded from macro 'OB_DEPRECATED_MSG'backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] // / \ Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": ^ Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": // \ Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": // \ Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: /src/openbabel/test/stereoperceptiontest.cpp:310'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]:21: Step #3 - "compile-afl-address-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": // \  ^ Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": // \ Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": switch (units.at(i).type) { Step #3 - "compile-afl-address-x86_64":  ^~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": switch (units.at(i).type) { Step #3 - "compile-afl-address-x86_64":  ^~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #3 - "compile-afl-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #3 - "compile-afl-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Linking CXX executable ../bin/roundtrip Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 92%] Linking CXX executable ../bin/obabel Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #3 - "compile-afl-address-x86_64": [ 93%] Built target fuzz_obconversion_smiles Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #3 - "compile-afl-address-x86_64": [ 93%] Built target fuzz_obconversion_sdf Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Built target roundtrip Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": x = m2.Get( i, j ); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": m3.Set(i,j, m2(i,j) ); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": Diagonal.Set(i, j, 0.0); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": Diagonal.Set(0, 0, randomizer.NextFloat()); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: [ 99%] Built target obabel Step #3 - "compile-afl-address-x86_64": 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rnd.Set(0,1, rnd.Get(1,0)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rnd.Set(0,1, rnd.Get(1,0)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rnd.Set(0,2, rnd.Get(2,0)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rnd.Set(0,2, rnd.Get(2,0)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rnd.Set(1,2, rnd.Get(2,1)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": rnd.Set(1,2, rnd.Get(2,1)); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNear(psa , 29.46)) { // value from JOELib2 Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": 6 warnings generated. Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": 17 warnings generated. Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": 24 warnings generated. Step #3 - "compile-afl-address-x86_64": 6 warnings generated. Step #3 - "compile-afl-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #3 - "compile-afl-address-x86_64": [100%] Built target test_runner Step #3 - "compile-afl-address-x86_64": + cp bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/afl-address-x86_64/ Finished Step #3 - "compile-afl-address-x86_64" Starting Step #4 - "build-check-afl-address-x86_64" Step #4 - "build-check-afl-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #4 - "build-check-afl-address-x86_64": Unable to find image 'gcr.io/oss-fuzz-base/base-runner:latest' locally Step #4 - "build-check-afl-address-x86_64": latest: Pulling from oss-fuzz-base/base-runner Step #4 - "build-check-afl-address-x86_64": b549f31133a9: Already exists Step #4 - "build-check-afl-address-x86_64": 800687449569: Already exists Step #4 - "build-check-afl-address-x86_64": 67cc84ed39bf: Already exists Step #4 - "build-check-afl-address-x86_64": 4f9c5aaef41d: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 70a3154e11f3: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 4fab6a53b47e: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 2c8974b97e3f: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 2c8974b97e3f: Waiting Step #4 - "build-check-afl-address-x86_64": fa34d2d81dbe: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 25703bb604aa: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": c73cf34df98f: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 52a1fd76d509: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": fa34d2d81dbe: Waiting Step #4 - "build-check-afl-address-x86_64": 6887dca9f6f7: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 25703bb604aa: Waiting Step #4 - "build-check-afl-address-x86_64": 9d450e2f2926: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 52a1fd76d509: Waiting Step #4 - "build-check-afl-address-x86_64": 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Download complete Step #4 - "build-check-afl-address-x86_64": 2c8974b97e3f: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 2c8974b97e3f: Download complete Step #4 - "build-check-afl-address-x86_64": 5bddf29a1eb5: Download complete Step #4 - "build-check-afl-address-x86_64": cd3fe814a4bf: Download complete Step #4 - "build-check-afl-address-x86_64": 9d450e2f2926: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 9d450e2f2926: Download complete Step #4 - "build-check-afl-address-x86_64": 5123d679bab9: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 5123d679bab9: Download complete Step #4 - "build-check-afl-address-x86_64": 2c8974b97e3f: Pull complete Step #4 - "build-check-afl-address-x86_64": fa34d2d81dbe: Pull complete Step #4 - "build-check-afl-address-x86_64": 25703bb604aa: Pull complete Step #4 - "build-check-afl-address-x86_64": c73cf34df98f: Pull complete Step #4 - "build-check-afl-address-x86_64": 52a1fd76d509: Pull complete Step #4 - "build-check-afl-address-x86_64": 6887dca9f6f7: Pull complete Step #4 - "build-check-afl-address-x86_64": 9d450e2f2926: Pull complete Step #4 - "build-check-afl-address-x86_64": caeaffc0bf5a: Pull complete Step #4 - "build-check-afl-address-x86_64": 5bddf29a1eb5: Pull complete Step #4 - "build-check-afl-address-x86_64": 5123d679bab9: Pull complete Step #4 - "build-check-afl-address-x86_64": cd3fe814a4bf: Pull complete Step #4 - "build-check-afl-address-x86_64": Digest: sha256:f6046c5172da95c6c285c79de830b29f4115d542fe22b864a5dbc1432da29528 Step #4 - "build-check-afl-address-x86_64": Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-runner:latest Step #4 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpmefy3r11/fuzz_obconversion_sdf Step #4 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpmefy3r11/fuzz_obconversion_smiles Finished Step #4 - "build-check-afl-address-x86_64" Starting Step #5 Step #5: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #5 Starting Step #6 Step #6: Already have image: gcr.io/oss-fuzz/openbabel Step #6: adding: SanitizerCoveragePCGUARD.so (deflated 70%) Step #6: adding: afl-analyze (deflated 54%) Step #6: adding: afl-as (deflated 63%) Step #6: adding: afl-c++ (deflated 55%) Step #6: adding: afl-cc (deflated 55%) Step #6: adding: afl-clang (deflated 55%) Step #6: adding: afl-clang++ (deflated 55%) Step #6: adding: afl-clang-fast (deflated 55%) Step #6: adding: afl-clang-fast++ (deflated 55%) Step #6: adding: afl-clang-lto (deflated 55%) Step #6: adding: afl-clang-lto++ (deflated 55%) Step #6: adding: afl-cmin (deflated 71%) Step #6: adding: afl-cmin.bash (deflated 65%) Step #6: adding: afl-compiler-rt-32.o (deflated 56%) Step #6: adding: afl-compiler-rt-64.o (deflated 67%) Step #6: adding: afl-compiler-rt.o (deflated 67%) Step #6: adding: afl-fuzz (deflated 55%) Step #6: adding: afl-g++ (deflated 55%) Step #6: adding: 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76%) Step #6: adding: fuzz_obconversion_sdf (deflated 65%) Step #6: adding: fuzz_obconversion_smiles (deflated 65%) Step #6: adding: libAFLDriver.a (deflated 63%) Step #6: adding: libAFLQemuDriver.a (deflated 64%) Step #6: adding: llvm-symbolizer (deflated 64%) Step #6: adding: split-compares-pass.so (deflated 68%) Step #6: adding: split-switches-pass.so (deflated 69%) Finished Step #6 Starting Step #7 Step #7: Pulling image: gcr.io/oss-fuzz-base/uploader Step #7: Using default tag: latest Step #7: latest: Pulling from oss-fuzz-base/uploader Step #7: c62795f78da9: Pulling fs layer Step #7: d4fceeeb758e: Pulling fs layer Step #7: 5c9125a401ae: Pulling fs layer Step #7: 0062f774e994: Pulling fs layer Step #7: 6b33fd031fac: Pulling fs layer Step #7: 7eb39101e508: Pulling fs layer Step #7: 89257482f398: Pulling fs layer Step #7: 6b33fd031fac: Waiting Step #7: 0062f774e994: Waiting Step #7: 89257482f398: Waiting Step #7: 7eb39101e508: Waiting Step #7: d4fceeeb758e: Verifying Checksum Step #7: d4fceeeb758e: Download complete Step #7: 5c9125a401ae: Download complete Step #7: 0062f774e994: Download complete Step #7: 6b33fd031fac: Verifying Checksum Step #7: 6b33fd031fac: Download complete Step #7: 89257482f398: Verifying Checksum Step #7: 89257482f398: Download complete Step #7: c62795f78da9: Verifying Checksum Step #7: c62795f78da9: Download complete Step #7: 7eb39101e508: Verifying Checksum Step #7: 7eb39101e508: Download complete Step #7: c62795f78da9: Pull complete Step #7: d4fceeeb758e: Pull complete Step #7: 5c9125a401ae: Pull complete Step #7: 0062f774e994: Pull complete Step #7: 6b33fd031fac: Pull complete Step #7: 7eb39101e508: Pull complete Step #7: 89257482f398: Pull complete Step #7: Digest: sha256:5717ba63d13b5515063e2a6ccad09fb5bf32a86c8e0798a363d81c2be522e411 Step #7: Status: Downloaded newer image for gcr.io/oss-fuzz-base/uploader:latest Step #7: gcr.io/oss-fuzz-base/uploader:latest Step #7: % Total % Received % Xferd Average Speed Time Time Time Current Step #7: Dload Upload Total Spent Left Speed Step #7: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 768 --:--:-- --:--:-- --:--:-- 769 Finished Step #7 Starting Step #8 Step #8: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #8: % Total % Received % Xferd Average Speed Time Time Time Current Step #8: Dload Upload Total Spent Left Speed Step #8: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 61.7M 0 0 100 61.7M 0 94.8M --:--:-- --:--:-- --:--:-- 94.8M 100 61.7M 0 0 100 61.7M 0 94.8M --:--:-- --:--:-- --:--:-- 94.7M Finished Step #8 Starting Step #9 Step #9: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #9: % Total % Received % Xferd Average Speed Time Time Time Current Step #9: Dload Upload Total Spent Left Speed Step #9: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 47 0 0 100 47 0 169 --:--:-- --:--:-- --:--:-- 169 100 47 0 0 100 47 0 169 --:--:-- --:--:-- --:--:-- 169 Finished Step #9 Starting Step #10 Step #10: Already have image (with digest): gcr.io/cloud-builders/curl Step #10: % Total % Received % Xferd Average Speed Time Time Time Current Step #10: Dload Upload Total Spent Left Speed Step #10: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 158 --:--:-- --:--:-- --:--:-- 158 Finished Step #10 Starting Step #11 Step #11: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #11 Starting Step #12 - "compile-honggfuzz-address-x86_64" Step #12 - "compile-honggfuzz-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": Skipping compilation; using precompiled honggfuzz Step #12 - "compile-honggfuzz-address-x86_64": done. Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": CC=clang Step #12 - "compile-honggfuzz-address-x86_64": CXX=clang++ Step #12 - "compile-honggfuzz-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp Step #12 - "compile-honggfuzz-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp -stdlib=libc++ Step #12 - "compile-honggfuzz-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": + mkdir build Step #12 - "compile-honggfuzz-address-x86_64": + cd build Step #12 - "compile-honggfuzz-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #12 - "compile-honggfuzz-address-x86_64": -- The C compiler identification is Clang 15.0.0 Step #12 - "compile-honggfuzz-address-x86_64": -- The CXX compiler identification is Clang 15.0.0 Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compiler ABI info Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compiler ABI info - done Step #12 - "compile-honggfuzz-address-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compile features Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compile features - done Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compiler ABI info Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compiler ABI info - done Step #12 - "compile-honggfuzz-address-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compile features Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compile features - done Step #12 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #12 - "compile-honggfuzz-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #12 - "compile-honggfuzz-address-x86_64": of CMake. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #12 - "compile-honggfuzz-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #12 - "compile-honggfuzz-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #12 - "compile-honggfuzz-address-x86_64": behavior and not rely on setting a policy to OLD. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Using included inchi library. Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #12 - "compile-honggfuzz-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #12 - "compile-honggfuzz-address-x86_64": libxml2 not found - disabling CML support! Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for conio.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for conio.h - not found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/time.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/time.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for time.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for time.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strings.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strings.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for rpc/xdr.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for rpc/xdr.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for regex.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for regex.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for C++ include sstream Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for C++ include sstream - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for rint Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for rint - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for snprintf Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for snprintf - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sranddev Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sranddev - not found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strcasecmp Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strcasecmp - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strncasecmp Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strncasecmp - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for dlopen in dl Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for dlopen in dl - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/types.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/types.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stdint.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stdint.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stddef.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stddef.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Check size of clock_t Step #12 - "compile-honggfuzz-address-x86_64": -- Check size of clock_t - done Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #12 - "compile-honggfuzz-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #12 - "compile-honggfuzz-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-1.1.0. Step #12 - "compile-honggfuzz-address-x86_64": -- JSON formats will be supported. Using RapidJSON 1.1.0 at /src/openbabel/external/rapidjson-1.1.0/include Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #12 - "compile-honggfuzz-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #12 - "compile-honggfuzz-address-x86_64": -- Found Threads: TRUE Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for getopt Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for getopt - found Step #12 - "compile-honggfuzz-address-x86_64": -- GUI will not be built Step #12 - "compile-honggfuzz-address-x86_64": -- Found PythonInterp: /usr/local/bin/python3.8 (found version "3.8.3") Step #12 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #12 - "compile-honggfuzz-address-x86_64": Compatibility with CMake < 2.8.12 will be removed from a future version of Step #12 - "compile-honggfuzz-address-x86_64": CMake. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #12 - "compile-honggfuzz-address-x86_64": CMake that the project does not need compatibility with older versions. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Configuring done Step #12 - "compile-honggfuzz-address-x86_64": -- Generating done Step #12 - "compile-honggfuzz-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #12 - "compile-honggfuzz-address-x86_64": ++ nproc Step #12 - "compile-honggfuzz-address-x86_64": + make -j 32 Step #12 - "compile-honggfuzz-address-x86_64": [ 0%] Generating atomtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 0%] Generating bondtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating phmodeldata.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating resdata.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating torlib.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating types.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating atomizationenergies.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Generating spacegroups.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Generating ringtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Built target data_headers Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": _ival=nullptr; Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/griddata.cpp/src/openbabel/src/molchrg.cpp:297:10:: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 27 if (!IsNearZero(val[2])) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": : Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197/src/openbabel/include/openbabel/grid.h::3: 118note: :28:'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29:warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": note: expanded from macro 'OB_DEPRECATED' if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h: #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": 105: ^ Step #12 - "compile-honggfuzz-address-x86_64": 5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rab = OBForceField::VectorLengthDerivative(da, db); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523/src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h::65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mcdlutil.cpp:50325:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #12 - "compile-honggfuzz-address-x86_64": if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": : note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(v1.length(), 1.0e-3) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": || IsNearZero(v2.length(), 1.0e-3)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": combinations *= rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rotorKeys.AddRotor(rotor->GetResolution().size()); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": combinations *= rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": combinations *= rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNear(worstE, bestE, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": weight = 1 / rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (bond2 == VZero || v1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (bond2 == VZero || v1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(scale)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^:2539 Step #12 - "compile-honggfuzz-address-x86_64": :11: /src/openbabel/include/openbabel/math/vector3.h:warning: 273:5:'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]  Step #12 - "compile-honggfuzz-address-x86_64": note:  if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:430: OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": 23/src/openbabel/build/include/openbabel/babelconfig.h:: warning: 38'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": : if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^38:  Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38 Step #12 - "compile-honggfuzz-address-x86_64": :38: note: expanded from macro 'OB_DEPRECATED_MSG' #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": ^ #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273/src/openbabel/src/forcefield.cpp::5: 2838note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": :11 OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h: 38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": warning: #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNear(e_n2, _e_n1, _econv) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:452: OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^28 Step #12 - "compile-honggfuzz-address-x86_64": : warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64":  else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^/src/openbabel/build/include/openbabel/babelconfig.h: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:538: note: :'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 38: OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": note: #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNear(e_n2, _e_n1, _econv) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond4 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond4 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond4 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: /src/openbabel/src/forcefield.cpp'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond5 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5:3719: :9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(length)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(length)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:718 OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2786:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (atom->GetVector() != VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2801:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (!hasX && !IsNearZero(atom->x())) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (!hasY && !IsNearZero(atom->y())) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2824:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (!hasX && !IsNearZero(atom->x())) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: :23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 'IsNearZero' is deprecated [-Wdeprecated-declarations] if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h OB_DEPRECATED: if (IsNearZero(length_ji)) {273:5 Step #12 - "compile-honggfuzz-address-x86_64":  ^:  Step #12 - "compile-honggfuzz-address-x86_64": note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64":  ^/src/openbabel/build/include/openbabel/babelconfig.h: Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": 38:38/src/openbabel/build/include/openbabel/babelconfig.h::37 :29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64":  #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: /src/openbabel/src/mol.cpp:2826:note: 23:note: expanded from macro 'OB_DEPRECATED_MSG'  Step #12 - "compile-honggfuzz-address-x86_64": 'IsNearZero' has been explicitly marked deprecated here #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": warning: #define OB_DEPRECATED [[deprecated]]'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (!hasY && !IsNearZero(atom->y())) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note:  Step #12 - "compile-honggfuzz-address-x86_64": 'IsNearZero' has been explicitly marked deprecated here ^ Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: /src/openbabel/src/forcefield.cpp:3962:warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations]9 Step #12 - "compile-honggfuzz-address-x86_64": if (!hasZ && !IsNearZero(atom->z())) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": : warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(length_jk)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(length_jl)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": mol.GetFirstAtom()->GetHyb(); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(length_ji)) {/src/openbabel/src/mol.cpp: Step #12 - "compile-honggfuzz-address-x86_64":  ^3250 Step #12 - "compile-honggfuzz-address-x86_64": :/src/openbabel/include/openbabel/obutil.h24:197:3: note: :'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64":  #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ((*ringit)->PathSize() == 5) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38/src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": : if (IsNearZero(length_jk)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64":  #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(length_jl)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:3272:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if ((*ringit)->PathSize() == 6) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:3341:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": loopSize = (*ringit)->PathSize(); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (bond1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": _vres.push_back(rotor->GetResolution()); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG'/src/openbabel/src/rotor.cpp Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]: Step #12 - "compile-honggfuzz-address-x86_64": 114:14:  ^ Step #12 - "compile-honggfuzz-address-x86_64": warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See HasFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rotor->SetNumCoords(mol.NumAtoms()*3); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("See HasFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rotor->SetEvalAtoms(eval); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rotor->SetDelta(delta); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Has no effect.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (!IsNearZero(pcharge)) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use vector version instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 5 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": gd->GetOriginVector(origin); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 34 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": quadrupole.Set(i[0], i[1], value); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": quadrupole.Set(i[1], i[0], value); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #12 - "compile-honggfuzz-address-x86_64": else if (vs[0][0] == '2') Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 51 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": switch(pRD->ReactionType) Step #12 - "compile-honggfuzz-address-x86_64":  ^~~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": switch(pRD->ReactionType) Step #12 - "compile-honggfuzz-address-x86_64":  ^~~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #12 - "compile-honggfuzz-address-x86_64": string path = (found == string::npos) ? "" : path.substr(0, found); Step #12 - "compile-honggfuzz-address-x86_64":  ~~~~ ^~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 9 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": gd->GetOriginVector(origin); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": OBAtom *atm = pmol->GetFirstAtom(); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": switch (chirality) { Step #12 - "compile-honggfuzz-address-x86_64":  ^~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64":  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64":  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64":  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64":  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64":  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64":  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64":  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64":  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": (float)maxint[1] - (float)minint[1] >= MAXABS || Step #12 - "compile-honggfuzz-address-x86_64":  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64":  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #12 - "compile-honggfuzz-address-x86_64":  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64":  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #12 - "compile-honggfuzz-address-x86_64": while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #12 - "compile-honggfuzz-address-x86_64": while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp[ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": :515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rab = OBForceField::VectorLengthDerivative(da, db); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": pFF->UpdateCoordinates(molCopy); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": pFF->UpdateCoordinates(molCopy); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #12 - "compile-honggfuzz-address-x86_64": static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #12 - "compile-honggfuzz-address-x86_64":  ~~~~~~~~~~~ ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #12 - "compile-honggfuzz-address-x86_64": static const float dashpattern[] = {5., 5.}; Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 9 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNearZero(v1.length(), 1.0e-3) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": || IsNearZero(v2.length(), 1.0e-3)) { Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 4 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Linking CXX static library libopenbabel.a Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Built target openbabel Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": // / \ Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": // / \ Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": // \ Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": // \ Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": // \ Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": // \ Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": switch (units.at(i).type) { Step #12 - "compile-honggfuzz-address-x86_64":  ^~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": switch (units.at(i).type) { Step #12 - "compile-honggfuzz-address-x86_64":  ^~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Linking CXX executable ../bin/obabel Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Linking CXX executable ../bin/roundtrip Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Built target fuzz_obconversion_smiles Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Built target fuzz_obconversion_sdf Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Built target obabel Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Built target roundtrip Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": x = m2.Get( i, j ); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": m3.Set(i,j, m2(i,j) ); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": Diagonal.Set(i, j, 0.0); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": Diagonal.Set(0, 0, randomizer.NextFloat()); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rnd.Set(0,1, rnd.Get(1,0)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rnd.Set(0,1, rnd.Get(1,0)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rnd.Set(0,2, rnd.Get(2,0)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rnd.Set(0,2, rnd.Get(2,0)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rnd.Set(1,2, rnd.Get(2,1)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rnd.Set(1,2, rnd.Get(2,1)); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNear(psa , 29.46)) { // value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": 17 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 24 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #12 - "compile-honggfuzz-address-x86_64": [100%] Built target test_runner Step #12 - "compile-honggfuzz-address-x86_64": + cp bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/honggfuzz-address-x86_64/ Finished Step #12 - "compile-honggfuzz-address-x86_64" Starting Step #13 - "build-check-honggfuzz-address-x86_64" Step #13 - "build-check-honggfuzz-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #13 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpdih5hat7/fuzz_obconversion_smiles Step #13 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpdih5hat7/fuzz_obconversion_sdf Finished Step #13 - "build-check-honggfuzz-address-x86_64" Starting Step #14 Step #14: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #14 Starting Step #15 Step #15: Already have image: gcr.io/oss-fuzz/openbabel Step #15: adding: fuzz_obconversion_sdf (deflated 64%) Step #15: adding: fuzz_obconversion_smiles (deflated 64%) Step #15: adding: honggfuzz (deflated 66%) Step #15: adding: llvm-symbolizer (deflated 64%) Finished Step #15 Starting Step #16 Step #16: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #16: % Total % Received % Xferd Average Speed Time Time Time Current Step #16: Dload Upload Total Spent Left Speed Step #16: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 674 --:--:-- --:--:-- --:--:-- 675 Finished Step #16 Starting Step #17 Step #17: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #17: % Total % Received % Xferd Average Speed Time Time Time Current Step #17: Dload Upload Total Spent Left Speed Step #17: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 30.1M 0 0 100 30.1M 0 67.8M --:--:-- --:--:-- --:--:-- 67.8M Finished Step #17 Starting Step #18 Step #18: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #18: % Total % Received % Xferd Average Speed Time Time Time Current Step #18: Dload Upload Total Spent Left Speed Step #18: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 47 0 0 100 47 0 144 --:--:-- --:--:-- --:--:-- 144 Finished Step #18 Starting Step #19 Step #19: Already have image (with digest): gcr.io/cloud-builders/curl Step #19: % Total % Received % Xferd Average Speed Time Time Time Current Step #19: Dload Upload Total Spent Left Speed Step #19: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 166 --:--:-- --:--:-- --:--:-- 166 Finished Step #19 Starting Step #20 Step #20: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #20 Starting Step #21 - "compile-libfuzzer-address-x86_64" Step #21 - "compile-libfuzzer-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": CC=clang Step #21 - "compile-libfuzzer-address-x86_64": CXX=clang++ Step #21 - "compile-libfuzzer-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link Step #21 - "compile-libfuzzer-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link -stdlib=libc++ Step #21 - "compile-libfuzzer-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": + mkdir build Step #21 - "compile-libfuzzer-address-x86_64": + cd build Step #21 - "compile-libfuzzer-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #21 - "compile-libfuzzer-address-x86_64": -- The C compiler identification is Clang 15.0.0 Step #21 - "compile-libfuzzer-address-x86_64": -- The CXX compiler identification is Clang 15.0.0 Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compiler ABI info Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compiler ABI info - done Step #21 - "compile-libfuzzer-address-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compile features Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compile features - done Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compiler ABI info Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compiler ABI info - done Step #21 - "compile-libfuzzer-address-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compile features Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compile features - done Step #21 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #21 - "compile-libfuzzer-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #21 - "compile-libfuzzer-address-x86_64": of CMake. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #21 - "compile-libfuzzer-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #21 - "compile-libfuzzer-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #21 - "compile-libfuzzer-address-x86_64": behavior and not rely on setting a policy to OLD. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Using included inchi library. Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #21 - "compile-libfuzzer-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #21 - "compile-libfuzzer-address-x86_64": libxml2 not found - disabling CML support! Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for conio.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for conio.h - not found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/time.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/time.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for time.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for time.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strings.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strings.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for rpc/xdr.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for rpc/xdr.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for regex.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for regex.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for C++ include sstream Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for C++ include sstream - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for rint Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for rint - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for snprintf Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for snprintf - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sranddev Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sranddev - not found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strcasecmp Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strcasecmp - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strncasecmp Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strncasecmp - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for dlopen in dl Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for dlopen in dl - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/types.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/types.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stdint.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stdint.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stddef.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stddef.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Check size of clock_t Step #21 - "compile-libfuzzer-address-x86_64": -- Check size of clock_t - done Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #21 - "compile-libfuzzer-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #21 - "compile-libfuzzer-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-1.1.0. Step #21 - "compile-libfuzzer-address-x86_64": -- JSON formats will be supported. Using RapidJSON 1.1.0 at /src/openbabel/external/rapidjson-1.1.0/include Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #21 - "compile-libfuzzer-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #21 - "compile-libfuzzer-address-x86_64": -- Found Threads: TRUE Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for getopt Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for getopt - found Step #21 - "compile-libfuzzer-address-x86_64": -- GUI will not be built Step #21 - "compile-libfuzzer-address-x86_64": -- Found PythonInterp: /usr/local/bin/python3.8 (found version "3.8.3") Step #21 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #21 - "compile-libfuzzer-address-x86_64": Compatibility with CMake < 2.8.12 will be removed from a future version of Step #21 - "compile-libfuzzer-address-x86_64": CMake. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #21 - "compile-libfuzzer-address-x86_64": CMake that the project does not need compatibility with older versions. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Configuring done Step #21 - "compile-libfuzzer-address-x86_64": -- Generating done Step #21 - "compile-libfuzzer-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #21 - "compile-libfuzzer-address-x86_64": ++ nproc Step #21 - "compile-libfuzzer-address-x86_64": + make -j 32 Step #21 - "compile-libfuzzer-address-x86_64": [ 0%] Generating atomtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 0%] Generating bondtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating phmodeldata.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating resdata.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating torlib.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating types.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating atomizationenergies.h Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Generating spacegroups.h Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Generating ringtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Built target data_headers Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": _ival=nullptr; Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (!IsNearZero(val[2])) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #21 - "compile-libfuzzer-address-x86_64": if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp: ^ Step #21 - "compile-libfuzzer-address-x86_64": 34: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(v1.length(), 1.0e-3) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": || IsNearZero(v2.length(), 1.0e-3)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": rab = OBForceField::VectorLengthDerivative(da, db); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": rl.SetFixAtoms(fixed); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": combinations *= rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": rotorKeys.AddRotor(rotor->GetResolution().size()); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (bond2 == VZero || v1 == VZero) {warning: Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": rl.SetFixAtoms(fixed); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64":  ^/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: /src/openbabel/src/builder.cppnote: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": :310 #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]: Step #21 - "compile-libfuzzer-address-x86_64": 34 ^ Step #21 - "compile-libfuzzer-address-x86_64": : warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (bond2 == VZero || v1 == VZero) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here/src/openbabel/src/forcefield.cpp:1372: Step #21 - "compile-libfuzzer-address-x86_64": 32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: ^  Step #21 - "compile-libfuzzer-address-x86_64": note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:/src/openbabel/build/include/openbabel/babelconfig.h38:38:38:: 38: note: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: /src/openbabel/include/openbabel/math/vector3.h'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations]: Step #21 - "compile-libfuzzer-address-x86_64": 273:5:  rl.SetFixAtoms(fixed);note:  Step #21 - "compile-libfuzzer-address-x86_64": 'operator==' has been explicitly marked deprecated here ^ Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") ^ Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:/src/openbabel/build/include/openbabel/babelconfig.h:38: 38:38: note: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": combinations *= rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:/src/openbabel/build/include/openbabel/babelconfig.h1482::38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]52:  Step #21 - "compile-libfuzzer-address-x86_64": warning:  ^'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG'/src/openbabel/src/builder.cpp Step #21 - "compile-libfuzzer-address-x86_64": :434:28: #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations]/src/openbabel/src/builder.cpp: Step #21 - "compile-libfuzzer-address-x86_64": 452:28: rl.SetFixAtoms(fixed);  Step #21 - "compile-libfuzzer-address-x86_64":  ^warning:  Step #21 - "compile-libfuzzer-address-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]/src/openbabel/include/openbabel/rotor.h: Step #21 - "compile-libfuzzer-address-x86_64": 633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h OB_DEPRECATED_MSG("See SetFixedBonds()"):273: Step #21 - "compile-libfuzzer-address-x86_64": 5 ^ Step #21 - "compile-libfuzzer-address-x86_64": : note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": :38 ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h::38:3838: : note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:454:28/src/openbabel/src/forcefield.cpp: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if (bond3 == VZero): Step #21 - "compile-libfuzzer-address-x86_64": 1635 ^: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: 32: warning: note: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": combinations *= rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64":  OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64":  ^/src/openbabel/include/openbabel/rotor.h Step #21 - "compile-libfuzzer-address-x86_64": :449:5: note: 'GetResolution' has been explicitly marked deprecated here/src/openbabel/build/include/openbabel/babelconfig.h Step #21 - "compile-libfuzzer-address-x86_64": :38:38:  OB_DEPRECATED_MSG("See GetTorsionValues()")note:  Step #21 - "compile-libfuzzer-address-x86_64":  ^expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #21 - "compile-libfuzzer-address-x86_64": :273: ^ Step #21 - "compile-libfuzzer-address-x86_64": 5/src/openbabel/include/openbabel/rotor.h:449:5: :note: 'GetResolution' has been explicitly marked deprecated herenote: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG': Step #21 - "compile-libfuzzer-address-x86_64": 38: #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^38: Step #21 - "compile-libfuzzer-address-x86_64":  note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: /src/openbabel/src/forcefield.cpp'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": :1719 else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": :43: /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning:  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": ^ Step #21 - "compile-libfuzzer-address-x86_64":  else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": if (IsNear(worstE, bestE, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64":  OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ ^ Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]/src/openbabel/include/openbabel/obutil.h Step #21 - "compile-libfuzzer-address-x86_64":  ^: Step #21 - "compile-libfuzzer-address-x86_64": 189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": weight = 1 / rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:494: #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]23 Step #21 - "compile-libfuzzer-address-x86_64": : ^warning: Step #21 - "compile-libfuzzer-address-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: /src/openbabel/src/forcefield.cppnote: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead."):1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2786:29: Step #21 - "compile-libfuzzer-address-x86_64": warning:  ^ Step #21 - "compile-libfuzzer-address-x86_64": 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38 if (atom->GetVector() != VZero): Step #21 - "compile-libfuzzer-address-x86_64": 38: ^ Step #21 - "compile-libfuzzer-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64":  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5:  ^note:  Step #21 - "compile-libfuzzer-address-x86_64": 'operator!=' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2801:23:  else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": ^ Step #21 - "compile-libfuzzer-address-x86_64":  if (!hasX && !IsNearZero(atom->x())) Step #21 - "compile-libfuzzer-address-x86_64":  ^/src/openbabel/include/openbabel/math/vector3.h Step #21 - "compile-libfuzzer-address-x86_64": :273:5: /src/openbabel/include/openbabel/obutil.h:197note: :3'operator==' has been explicitly marked deprecated here: Step #21 - "compile-libfuzzer-address-x86_64": note: 'IsNearZero' has been explicitly marked deprecated here OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  OB_DEPRECATED ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38/src/openbabel/build/include/openbabel/babelconfig.h::3837:: 29: note: expanded from macro 'OB_DEPRECATED_MSG'note:  Step #21 - "compile-libfuzzer-address-x86_64": expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  #define OB_DEPRECATED [[deprecated]] ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (!hasY && !IsNearZero(atom->y())) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2824:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (!hasX && !IsNearZero(atom->x())) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp/src/openbabel/src/mol.cpp::5202826::2823:: warning: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": else if (bond4 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ if (!hasY && !IsNearZero(atom->y())) Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273/src/openbabel/include/openbabel/obutil.h::5197:: 3: note: 'operator==' has been explicitly marked deprecated herenote:  Step #21 - "compile-libfuzzer-address-x86_64": 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  ^ ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:/src/openbabel/build/include/openbabel/babelconfig.h37::3829::38 : note: note: expanded from macro 'OB_DEPRECATED'expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (!hasZ && !IsNearZero(atom->z())) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if (bond4 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (bond1 == VZero)/src/openbabel/src/mol.cpp:3250:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": if ((*ringit)->PathSize() == 5) ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": :273:5: /src/openbabel/include/openbabel/ring.hnote: 'operator==' has been explicitly marked deprecated here: Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": 65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2420/src/openbabel/src/builder.cpp:570::289: : warning: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if (bond4 == VZero) if (IsNearZero(scale)) { Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273/src/openbabel/src/mol.cpp: ^ Step #21 - "compile-libfuzzer-address-x86_64": 3272:29: /src/openbabel/include/openbabel/obutil.h:197warning: :3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if ((*ringit)->PathSize() == 6) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: :'IsNear' has been explicitly marked deprecated here5:  Step #21 - "compile-libfuzzer-address-x86_64":  OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": note:  ^'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h: ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": 38:38: note: expanded from macro 'OB_DEPRECATED_MSG'/src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": else if (bond5 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^/src/openbabel/src/mol.cpp:3341:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": loopSize = (*ringit)->PathSize(); Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38 ^:38 Step #21 - "compile-libfuzzer-address-x86_64": : note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": :2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here/src/openbabel/src/builder.cpp:720:28: warning:  Step #21 - "compile-libfuzzer-address-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:/src/openbabel/build/include/openbabel/babelconfig.h5: :note: 38'operator==' has been explicitly marked deprecated here: Step #21 - "compile-libfuzzer-address-x86_64": 38:  OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^note:  Step #21 - "compile-libfuzzer-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38 #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": :38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNear(e_n2, _e_n1, _econv) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNear(e_n2, _e_n1, _econv) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": mol.GetFirstAtom()->GetHyb(); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(length)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(length)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(length_ji)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(length_jk)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(length_jl)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (bond1 == VZero) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(length_ji)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(length_jk)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(length_jl)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See HasFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": rotor->SetNumCoords(mol.NumAtoms()*3); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See HasFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": rotor->SetEvalAtoms(eval); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": rotor->SetDelta(delta); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Has no effect.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": _vres.push_back(rotor->GetResolution()); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (!IsNearZero(pcharge)) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector version instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 5 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": gd->GetOriginVector(origin); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 34 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": quadrupole.Set(i[0], i[1], value); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": quadrupole.Set(i[1], i[0], value); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #21 - "compile-libfuzzer-address-x86_64": else if (vs[0][0] == '2') Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 51 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp[ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": :911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": switch(pRD->ReactionType) Step #21 - "compile-libfuzzer-address-x86_64":  ^~~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": switch(pRD->ReactionType) Step #21 - "compile-libfuzzer-address-x86_64":  ^~~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 9 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #21 - "compile-libfuzzer-address-x86_64": string path = (found == string::npos) ? "" : path.substr(0, found); Step #21 - "compile-libfuzzer-address-x86_64":  ~~~~ ^~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": gd->GetOriginVector(origin); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": OBAtom *atm = pmol->GetFirstAtom(); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": switch (chirality) { Step #21 - "compile-libfuzzer-address-x86_64":  ^~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64":  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64":  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64":  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64":  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64":  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64":  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64":  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64":  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": (float)maxint[1] - (float)minint[1] >= MAXABS || Step #21 - "compile-libfuzzer-address-x86_64":  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64":  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #21 - "compile-libfuzzer-address-x86_64":  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64":  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #21 - "compile-libfuzzer-address-x86_64": while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": while loop has empty body [-Wempty-body] Step #21 - "compile-libfuzzer-address-x86_64": while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": rab = OBForceField::VectorLengthDerivative(da, db); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": pFF->UpdateCoordinates(molCopy); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": pFF->UpdateCoordinates(molCopy); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #21 - "compile-libfuzzer-address-x86_64": static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #21 - "compile-libfuzzer-address-x86_64":  ~~~~~~~~~~~ ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #21 - "compile-libfuzzer-address-x86_64": static const float dashpattern[] = {5., 5.}; Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 9 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNearZero(v1.length(), 1.0e-3) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": || IsNearZero(v2.length(), 1.0e-3)) { Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 4 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Linking CXX static library libopenbabel.a Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Built target openbabel Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": // / \ Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": // / \ Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": // \ Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": // \ Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": // \ Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": // \ Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": switch (units.at(i).type) { Step #21 - "compile-libfuzzer-address-x86_64":  ^~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": switch (units.at(i).type) { Step #21 - "compile-libfuzzer-address-x86_64":  ^~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Linking CXX executable ../bin/roundtrip Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Linking CXX executable ../bin/obabel Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Built target fuzz_obconversion_sdf Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Built target fuzz_obconversion_smiles Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Built target obabel Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Built target roundtrip Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": x = m2.Get( i, j ); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": m3.Set(i,j, m2(i,j) ); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": Diagonal.Set(i, j, 0.0); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": Diagonal.Set(0, 0, randomizer.NextFloat()); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": rnd.Set(0,1, rnd.Get(1,0)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": rnd.Set(0,1, rnd.Get(1,0)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": rnd.Set(0,2, rnd.Get(2,0)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": rnd.Set(0,2, rnd.Get(2,0)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": rnd.Set(1,2, rnd.Get(2,1)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": rnd.Set(1,2, rnd.Get(2,1)); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNear(psa , 29.46)) { // value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": 17 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": 24 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #21 - "compile-libfuzzer-address-x86_64": [100%] Built target test_runner Step #21 - "compile-libfuzzer-address-x86_64": + cp bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-address-x86_64/ Finished Step #21 - "compile-libfuzzer-address-x86_64" Starting Step #22 - "build-check-libfuzzer-address-x86_64" Step #22 - "build-check-libfuzzer-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #22 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp0y88xj0y/fuzz_obconversion_smiles Step #22 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp0y88xj0y/fuzz_obconversion_sdf Finished Step #22 - "build-check-libfuzzer-address-x86_64" Starting Step #23 Step #23: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #23 Starting Step #24 Step #24: Already have image: gcr.io/oss-fuzz/openbabel Step #24: adding: fuzz_obconversion_sdf (deflated 65%) Step #24: adding: fuzz_obconversion_smiles (deflated 65%) Step #24: adding: llvm-symbolizer (deflated 64%) Finished Step #24 Starting Step #25 Step #25: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #25: % Total % Received % Xferd Average Speed Time Time Time Current Step #25: Dload Upload Total Spent Left Speed Step #25: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 740 --:--:-- --:--:-- --:--:-- 744 Finished Step #25 Starting Step #26 Step #26: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #26: % Total % Received % Xferd Average Speed Time Time Time Current Step #26: Dload Upload Total Spent Left Speed Step #26: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 30.7M 0 0 100 30.7M 0 31.9M --:--:-- --:--:-- --:--:-- 31.9M 100 30.7M 0 0 100 30.7M 0 31.9M --:--:-- --:--:-- --:--:-- 31.9M Finished Step #26 Starting Step #27 Step #27: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #27: % Total % Received % Xferd Average Speed Time Time Time Current Step #27: Dload Upload Total Spent Left Speed Step #27: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 47 0 0 100 47 0 141 --:--:-- --:--:-- --:--:-- 141 Finished Step #27 Starting Step #28 Step #28: Already have image (with digest): gcr.io/cloud-builders/curl Step #28: % Total % Received % Xferd Average Speed Time Time Time Current Step #28: Dload Upload Total Spent Left Speed Step #28: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 182 --:--:-- --:--:-- --:--:-- 182 Finished Step #28 Starting Step #29 Step #29: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #29 Starting Step #30 - "compile-libfuzzer-undefined-x86_64" Step #30 - "compile-libfuzzer-undefined-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": CC=clang Step #30 - "compile-libfuzzer-undefined-x86_64": CXX=clang++ Step #30 - "compile-libfuzzer-undefined-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,float-divide-by-zero,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,float-divide-by-zero,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link Step #30 - "compile-libfuzzer-undefined-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,float-divide-by-zero,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,float-divide-by-zero,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -stdlib=libc++ Step #30 - "compile-libfuzzer-undefined-x86_64": RUSTFLAGS=--cfg fuzzing -Cdebuginfo=1 -Cforce-frame-pointers Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": + mkdir build Step #30 - "compile-libfuzzer-undefined-x86_64": + cd build Step #30 - "compile-libfuzzer-undefined-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #30 - "compile-libfuzzer-undefined-x86_64": -- The C compiler identification is Clang 15.0.0 Step #30 - "compile-libfuzzer-undefined-x86_64": -- The CXX compiler identification is Clang 15.0.0 Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compiler ABI info Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compiler ABI info - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compile features Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compile features - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compiler ABI info Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compiler ABI info - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compile features Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compile features - done Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #30 - "compile-libfuzzer-undefined-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #30 - "compile-libfuzzer-undefined-x86_64": of CMake. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #30 - "compile-libfuzzer-undefined-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #30 - "compile-libfuzzer-undefined-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #30 - "compile-libfuzzer-undefined-x86_64": behavior and not rely on setting a policy to OLD. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Using included inchi library. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #30 - "compile-libfuzzer-undefined-x86_64": libxml2 not found - disabling CML support! Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for conio.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for conio.h - not found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/time.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/time.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for time.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for time.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strings.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strings.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for rpc/xdr.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for rpc/xdr.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for regex.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for regex.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for C++ include sstream Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for C++ include sstream - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for rint Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for rint - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for snprintf Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for snprintf - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sranddev Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sranddev - not found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strcasecmp Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strcasecmp - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strncasecmp Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strncasecmp - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for dlopen in dl Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for dlopen in dl - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/types.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/types.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stdint.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stdint.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stddef.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stddef.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check size of clock_t Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check size of clock_t - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-1.1.0. Step #30 - "compile-libfuzzer-undefined-x86_64": -- JSON formats will be supported. Using RapidJSON 1.1.0 at /src/openbabel/external/rapidjson-1.1.0/include Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found Threads: TRUE Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for getopt Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for getopt - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- GUI will not be built Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found PythonInterp: /usr/local/bin/python3.8 (found version "3.8.3") Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #30 - "compile-libfuzzer-undefined-x86_64": Compatibility with CMake < 2.8.12 will be removed from a future version of Step #30 - "compile-libfuzzer-undefined-x86_64": CMake. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #30 - "compile-libfuzzer-undefined-x86_64": CMake that the project does not need compatibility with older versions. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Configuring done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Generating done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Build files have been written to: /src/openbabel/build Step #30 - "compile-libfuzzer-undefined-x86_64": ++ nproc Step #30 - "compile-libfuzzer-undefined-x86_64": + make -j 32 Step #30 - "compile-libfuzzer-undefined-x86_64": [ 0%] Generating atomtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 0%] Generating bondtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating phmodeldata.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating resdata.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating types.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating torlib.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating atomizationenergies.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Generating spacegroups.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Generating ringtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Built target data_headers Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": _ival=nullptr; Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (!IsNearZero(val[2])) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #30 - "compile-libfuzzer-undefined-x86_64": if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(v1.length(), 1.0e-3) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": || IsNearZero(v2.length(), 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rab = OBForceField::VectorLengthDerivative(da, db); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": combinations *= rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rotorKeys.AddRotor(rotor->GetResolution().size()); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (bond2 == VZero || v1 == VZero) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:/src/openbabel/src/builder.cpp:310633::34:5 :warning:  'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (bond2 == VZero || v1 == VZero) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.hnote: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG':273: Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1457 OB_DEPRECATED_MSG("Use vector3::IsApprox() instead."):32 Step #30 - "compile-libfuzzer-undefined-x86_64": : warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": combinations *= rotor->GetResolution().size(); ^ Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:/src/openbabel/build/include/openbabel/babelconfig.h:38:385:: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": note: /src/openbabel/build/include/openbabel/babelconfig.h:expanded from macro 'OB_DEPRECATED_MSG'38 Step #30 - "compile-libfuzzer-undefined-x86_64": :38:  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38:/src/openbabel/src/builder.cpp note: :359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (bond1 == VZero)expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5 Step #30 - "compile-libfuzzer-undefined-x86_64": :  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38/src/openbabel/src/forcefield.cpp::381635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": combinations *= rotor->GetResolution().size();: Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5:note: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": expanded from macro 'OB_DEPRECATED_MSG'/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": : ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 1685:/src/openbabel/build/include/openbabel/babelconfig.h:3843:38:: note: warning: expanded from macro 'OB_DEPRECATED_MSG''GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]/src/openbabel/include/openbabel/rotor.h:449 Step #30 - "compile-libfuzzer-undefined-x86_64": :5: note: 'GetResolution' has been explicitly marked deprecated here ^ Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp/src/openbabel/src/builder.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64": :450:23: ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  /src/openbabel/include/openbabel/rotor.hwarning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]:449: Step #30 - "compile-libfuzzer-undefined-x86_64": if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 5/src/openbabel/include/openbabel/math/vector3.h:273: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": :5: OB_DEPRECATED_MSG("See GetTorsionValues()")  Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: note: 'operator==' has been explicitly marked deprecated hereexpanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: /src/openbabel/src/forcefield.cpp'operator==' has been explicitly marked deprecated here:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNear(worstE, bestE, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: /src/openbabel/src/builder.cppnote: :454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond3 == VZero)'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64":  ^/src/openbabel/build/include/openbabel/babelconfig.h: Step #30 - "compile-libfuzzer-undefined-x86_64": 38:38/src/openbabel/build/include/openbabel/babelconfig.h::38 note: expanded from macro 'OB_DEPRECATED_MSG': Step #30 - "compile-libfuzzer-undefined-x86_64": 38: #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": weight = 1 / rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp: if (bond1 == VZero)1761 Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h::45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(scale)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: /src/openbabel/src/builder.cpp:516:28expanded from macro 'OB_DEPRECATED': Step #30 - "compile-libfuzzer-undefined-x86_64":  #define OB_DEPRECATED [[deprecated]]warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": ^ else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp/src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]:273:5:  Step #30 - "compile-libfuzzer-undefined-x86_64": note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond4 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond4 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:/src/openbabel/include/openbabel/math/vector3.h:273:5:2657:11: warning: note: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  ^/src/openbabel/include/openbabel/obutil.h Step #30 - "compile-libfuzzer-undefined-x86_64": :189/src/openbabel/build/include/openbabel/babelconfig.h::338:: 38: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38 #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": : note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: /src/openbabel/src/builder.cpp:568:28:'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64":  if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond4 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond5 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNear(e_n2, _e_n1, _econv) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2786:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (atom->GetVector() != VZero) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2801:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (!hasX && !IsNearZero(atom->x())) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (!hasY && !IsNearZero(atom->y())) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2824:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (!hasX && !IsNearZero(atom->x())) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (!hasY && !IsNearZero(atom->y())) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (!hasZ && !IsNearZero(atom->z())) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:/src/openbabel/src/builder.cpp:197:718:23: 3: note: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  if (bond1 == VZero) ^ Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here:37 Step #30 - "compile-libfuzzer-undefined-x86_64": :29:  OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^note: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:expanded from macro 'OB_DEPRECATED'38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNear(e_n2, _e_n1, _econv) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: /src/openbabel/src/builder.cppnote: :720:28: warning: 'IsNear' has been explicitly marked deprecated here'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  ^/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64":  OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38: #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^38: Step #30 - "compile-libfuzzer-undefined-x86_64":  note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": mol.GetFirstAtom()->GetHyb(); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3250:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ((*ringit)->PathSize() == 5) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3272:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": else if ((*ringit)->PathSize() == 6) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3341:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations]/src/openbabel/src/forcefield.cpp Step #30 - "compile-libfuzzer-undefined-x86_64": :3735:9: warning:  loopSize = (*ringit)->PathSize();'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  if (IsNearZero(length)) {/src/openbabel/include/openbabel/ring.h Step #30 - "compile-libfuzzer-undefined-x86_64": :65 ^: Step #30 - "compile-libfuzzer-undefined-x86_64": 5: note: 'PathSize' has been explicitly marked deprecated here/src/openbabel/include/openbabel/obutil.h Step #30 - "compile-libfuzzer-undefined-x86_64": : OB_DEPRECATED_MSG("Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": 197:3:  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": note: 'IsNearZero' has been explicitly marked deprecated here/src/openbabel/build/include/openbabel/babelconfig.h:38 Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED:38: Step #30 - "compile-libfuzzer-undefined-x86_64": note: ^expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(length)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(length_ji)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(length_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(length_jl)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (bond1 == VZero) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp/src/openbabel/build/include/openbabel/babelconfig.h:38:38: :4067:9: warning: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(length_ji)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(length_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(length_jl)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": _vres.push_back(rotor->GetResolution()); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See HasFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rotor->SetNumCoords(mol.NumAtoms()*3); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("See HasFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rotor->SetEvalAtoms(eval); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rotor->SetDelta(delta); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Has no effect.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (!IsNearZero(pcharge)) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector version instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 5 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": gd->GetOriginVector(origin); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": quadrupole.Set(i[0], i[1], value); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": quadrupole.Set(i[1], i[0], value); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #30 - "compile-libfuzzer-undefined-x86_64": else if (vs[0][0] == '2') Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 34 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": switch(pRD->ReactionType) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^~~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": switch(pRD->ReactionType) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^~~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 51 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #30 - "compile-libfuzzer-undefined-x86_64": string path = (found == string::npos) ? "" : path.substr(0, found); Step #30 - "compile-libfuzzer-undefined-x86_64":  ~~~~ ^~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": gd->GetOriginVector(origin); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 9 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": OBAtom *atm = pmol->GetFirstAtom(); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": switch (chirality) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64":  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64":  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64":  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64":  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": (float)maxint[1] - (float)minint[1] >= MAXABS || Step #30 - "compile-libfuzzer-undefined-x86_64":  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64":  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #30 - "compile-libfuzzer-undefined-x86_64":  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64":  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #30 - "compile-libfuzzer-undefined-x86_64": while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #30 - "compile-libfuzzer-undefined-x86_64": while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rab = OBForceField::VectorLengthDerivative(da, db); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": pFF->UpdateCoordinates(molCopy); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": pFF->UpdateCoordinates(molCopy); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #30 - "compile-libfuzzer-undefined-x86_64": static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ~~~~~~~~~~~ ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #30 - "compile-libfuzzer-undefined-x86_64": static const float dashpattern[] = {5., 5.}; Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 9 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(v1.length(), 1.0e-3) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": || IsNearZero(v2.length(), 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 4 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Linking CXX static library libopenbabel.a Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Built target openbabel Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": // / \ Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": // / \ Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": // \ Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": // \ Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": // \ Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": // \ Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": switch (units.at(i).type) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": switch (units.at(i).type) { Step #30 - "compile-libfuzzer-undefined-x86_64":  ^~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Linking CXX executable ../bin/obabel Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Linking CXX executable ../bin/roundtrip Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Built target fuzz_obconversion_smiles Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Built target fuzz_obconversion_sdf Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Built target obabel Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": x = m2.Get( i, j ); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": m3.Set(i,j, m2(i,j) ); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": Diagonal.Set(i, j, 0.0); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": Diagonal.Set(0, 0, randomizer.NextFloat()); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rnd.Set(0,1, rnd.Get(1,0)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rnd.Set(0,1, rnd.Get(1,0)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rnd.Set(0,2, rnd.Get(2,0)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rnd.Set(0,2, rnd.Get(2,0)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rnd.Set(1,2, rnd.Get(2,1)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rnd.Set(1,2, rnd.Get(2,1)); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNear(psa , 29.46)) { // value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Built target roundtrip Step #30 - "compile-libfuzzer-undefined-x86_64": 17 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 24 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #30 - "compile-libfuzzer-undefined-x86_64": [100%] Built target test_runner Step #30 - "compile-libfuzzer-undefined-x86_64": + cp bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-undefined-x86_64/ Finished Step #30 - "compile-libfuzzer-undefined-x86_64" Starting Step #31 - "build-check-libfuzzer-undefined-x86_64" Step #31 - "build-check-libfuzzer-undefined-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #31 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpx089102a/fuzz_obconversion_smiles Step #31 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpx089102a/fuzz_obconversion_sdf Finished Step #31 - "build-check-libfuzzer-undefined-x86_64" Starting Step #32 Step #32: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #32 Starting Step #33 Step #33: Already have image: gcr.io/oss-fuzz/openbabel Step #33: adding: fuzz_obconversion_sdf (deflated 69%) Step #33: adding: fuzz_obconversion_smiles (deflated 69%) Step #33: adding: llvm-symbolizer (deflated 64%) Finished Step #33 Starting Step #34 Step #34: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #34: % Total % Received % Xferd Average Speed Time Time Time Current Step #34: Dload Upload Total Spent Left Speed Step #34: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 718 --:--:-- --:--:-- --:--:-- 720 Finished Step #34 Starting Step #35 Step #35: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #35: % Total % Received % Xferd Average Speed Time Time Time Current Step #35: Dload Upload Total Spent Left Speed Step #35: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 22.4M 0 0 100 22.4M 0 51.2M --:--:-- --:--:-- --:--:-- 51.3M Finished Step #35 Starting Step #36 Step #36: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #36: % Total % Received % Xferd Average Speed Time Time Time Current Step #36: Dload Upload Total Spent Left Speed Step #36: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 47 0 0 100 47 0 169 --:--:-- --:--:-- --:--:-- 170 Finished Step #36 Starting Step #37 Step #37: Already have image (with digest): gcr.io/cloud-builders/curl Step #37: % Total % Received % Xferd Average Speed Time Time Time Current Step #37: Dload Upload Total Spent Left Speed Step #37: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 36 0 0 100 36 0 186 --:--:-- --:--:-- --:--:-- 186 100 36 0 0 100 36 0 186 --:--:-- --:--:-- --:--:-- 185 Finished Step #37 Starting Step #38 Step #38: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #38 PUSH DONE