starting build "055f6561-37b2-4b27-bfbf-99cf46434106" FETCHSOURCE BUILD Starting Step #0 Step #0: Pulling image: gcr.io/oss-fuzz-base/base-runner Step #0: Using default tag: latest Step #0: latest: Pulling from oss-fuzz-base/base-runner Step #0: b549f31133a9: Pulling fs layer Step #0: 800687449569: Pulling fs layer Step #0: 67cc84ed39bf: Pulling fs layer Step #0: 4f9c5aaef41d: Pulling fs layer Step #0: 70a3154e11f3: Pulling fs layer Step #0: 4fab6a53b47e: Pulling fs layer Step #0: 2c8974b97e3f: Pulling fs layer Step #0: fa34d2d81dbe: Pulling fs layer Step #0: 25703bb604aa: Pulling fs layer Step #0: c73cf34df98f: Pulling fs layer Step #0: 52a1fd76d509: Pulling fs layer Step #0: 6887dca9f6f7: Pulling fs layer Step #0: 9d450e2f2926: Pulling fs layer Step #0: caeaffc0bf5a: Pulling fs layer Step #0: 5bddf29a1eb5: Pulling fs layer Step #0: 5123d679bab9: Pulling fs layer Step #0: cd3fe814a4bf: Pulling fs layer Step #0: 4fab6a53b47e: Waiting Step #0: 2c8974b97e3f: Waiting Step #0: fa34d2d81dbe: Waiting Step #0: 25703bb604aa: Waiting Step #0: c73cf34df98f: Waiting Step #0: 52a1fd76d509: Waiting Step #0: 6887dca9f6f7: Waiting Step #0: 9d450e2f2926: Waiting Step #0: caeaffc0bf5a: Waiting Step #0: 5bddf29a1eb5: Waiting Step #0: 5123d679bab9: Waiting Step #0: cd3fe814a4bf: Waiting Step #0: 4f9c5aaef41d: Waiting Step #0: 70a3154e11f3: Waiting Step #0: 67cc84ed39bf: Verifying Checksum Step #0: 67cc84ed39bf: Download complete Step #0: 4f9c5aaef41d: Verifying Checksum Step #0: 4f9c5aaef41d: Download complete Step #0: 70a3154e11f3: Verifying Checksum Step #0: 70a3154e11f3: Download complete Step #0: 4fab6a53b47e: Download complete Step #0: b549f31133a9: Verifying Checksum Step #0: b549f31133a9: Download complete Step #0: fa34d2d81dbe: Download complete Step #0: 25703bb604aa: Verifying Checksum Step #0: 25703bb604aa: Download complete Step #0: c73cf34df98f: Verifying Checksum Step #0: c73cf34df98f: Download complete Step #0: 800687449569: Verifying Checksum Step #0: 800687449569: Download complete Step #0: 6887dca9f6f7: Verifying Checksum Step #0: 6887dca9f6f7: Download complete Step #0: 52a1fd76d509: Verifying Checksum Step #0: 52a1fd76d509: Download complete Step #0: 2c8974b97e3f: Verifying Checksum Step #0: 2c8974b97e3f: Download complete Step #0: caeaffc0bf5a: Verifying Checksum Step #0: caeaffc0bf5a: Download complete Step #0: 5bddf29a1eb5: Verifying Checksum Step #0: 5bddf29a1eb5: Download complete Step #0: cd3fe814a4bf: Verifying Checksum Step #0: cd3fe814a4bf: Download complete Step #0: 9d450e2f2926: Verifying Checksum Step #0: 9d450e2f2926: Download complete Step #0: b549f31133a9: Pull complete Step #0: 5123d679bab9: Verifying Checksum Step #0: 5123d679bab9: Download complete Step #0: 800687449569: Pull complete Step #0: 67cc84ed39bf: Pull complete Step #0: 4f9c5aaef41d: Pull complete Step #0: 70a3154e11f3: Pull complete Step #0: 4fab6a53b47e: Pull complete Step #0: 2c8974b97e3f: Pull complete Step #0: fa34d2d81dbe: Pull complete Step #0: 25703bb604aa: Pull complete Step #0: c73cf34df98f: Pull complete Step #0: 52a1fd76d509: Pull complete Step #0: 6887dca9f6f7: Pull complete Step #0: 9d450e2f2926: Pull complete Step #0: caeaffc0bf5a: Pull complete Step #0: 5bddf29a1eb5: Pull complete Step #0: 5123d679bab9: Pull complete Step #0: cd3fe814a4bf: Pull complete Step #0: Digest: sha256:f6046c5172da95c6c285c79de830b29f4115d542fe22b864a5dbc1432da29528 Step #0: Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-runner:latest Step #0: gcr.io/oss-fuzz-base/base-runner:latest Finished Step #0 Starting Step #1 Step #1: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #1: Copying gs://oss-fuzz-coverage/openbabel/textcov_reports/20231201/fuzz_obconversion_sdf.covreport... Step #1: / [0/2 files][ 0.0 B/ 1.2 MiB] 0% Done Copying gs://oss-fuzz-coverage/openbabel/textcov_reports/20231201/fuzz_obconversion_smiles.covreport... Step #1: / [0/2 files][ 0.0 B/ 1.2 MiB] 0% Done / [1/2 files][451.6 KiB/ 1.2 MiB] 38% Done / [2/2 files][ 1.2 MiB/ 1.2 MiB] 100% Done Step #1: Operation completed over 2 objects/1.2 MiB. Finished Step #1 Starting Step #2 Step #2: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Step #2: total 1176 Step #2: -rw-r--r-- 1 root root 462471 Dec 1 10:16 fuzz_obconversion_smiles.covreport Step #2: -rw-r--r-- 1 root root 738686 Dec 1 10:16 fuzz_obconversion_sdf.covreport Finished Step #2 Starting Step #3 Step #3: Already have image (with digest): gcr.io/cloud-builders/git Step #3: Cloning into 'oss-fuzz'... Finished Step #3 Starting Step #4 Step #4: Already have image (with digest): gcr.io/cloud-builders/docker Step #4: Sending build context to Docker daemon 5.12kB Step #4: Step 1/6 : FROM gcr.io/oss-fuzz-base/base-builder Step #4: latest: Pulling from oss-fuzz-base/base-builder Step #4: b549f31133a9: Already exists Step #4: 800687449569: Already exists Step #4: 67cc84ed39bf: Already exists Step #4: 33c4464df317: Pulling fs layer Step #4: 7a3d59ffed63: Pulling fs layer Step #4: bc24bccd8f7c: Pulling fs layer Step #4: 18d20619fb8d: Pulling fs layer Step #4: 0ec212d79142: Pulling fs layer Step #4: 0d731e844f5b: Pulling fs layer Step #4: 03e6d4298870: Pulling fs layer Step #4: 9cb6c9480ffe: Pulling fs layer Step #4: 636367483a85: Pulling fs layer Step #4: ab160a08f40f: Pulling fs layer Step #4: d56fb1501120: Pulling fs layer Step #4: 6e5ee80d4b76: Pulling fs layer Step #4: 069b70ca1828: Pulling fs layer Step #4: 082a5c4ba783: Pulling fs layer Step #4: aeb889ce9374: Pulling fs layer Step #4: 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Checksum Step #4: 069b70ca1828: Download complete Step #4: 082a5c4ba783: Verifying Checksum Step #4: 082a5c4ba783: Download complete Step #4: aeb889ce9374: Verifying Checksum Step #4: aeb889ce9374: Download complete Step #4: b3c77a307741: Verifying Checksum Step #4: b3c77a307741: Download complete Step #4: 19afa95abd0d: Verifying Checksum Step #4: 19afa95abd0d: Download complete Step #4: 3331bfca5447: Verifying Checksum Step #4: 3331bfca5447: Download complete Step #4: 33c4464df317: Pull complete Step #4: ca89507fe8d3: Verifying Checksum Step #4: ca89507fe8d3: Download complete Step #4: 093d0a8d4813: Download complete Step #4: 562130e5e1f0: Download complete Step #4: c78d65770fdc: Verifying Checksum Step #4: c78d65770fdc: Download complete Step #4: 03e6d4298870: Verifying Checksum Step #4: 03e6d4298870: Download complete Step #4: 7a3d59ffed63: Pull complete Step #4: d8a48a39f3bb: Verifying Checksum Step #4: d8a48a39f3bb: Download complete Step #4: bc24bccd8f7c: Pull complete Step #4: cd72b15f7674: Download complete Step #4: 18d20619fb8d: Verifying Checksum Step #4: 18d20619fb8d: Download complete Step #4: d547270a8392: Verifying Checksum Step #4: d547270a8392: Download complete Step #4: fed123fa2f8a: Verifying Checksum Step #4: fed123fa2f8a: Download complete Step #4: 39a8609a58c5: Verifying Checksum Step #4: 39a8609a58c5: Download complete Step #4: 18d20619fb8d: Pull complete Step #4: 0ec212d79142: Pull complete Step #4: 0d731e844f5b: Pull complete Step #4: 03e6d4298870: Pull complete Step #4: 9cb6c9480ffe: Pull complete Step #4: 636367483a85: Pull complete Step #4: ab160a08f40f: Pull complete Step #4: d56fb1501120: Pull complete Step #4: 6e5ee80d4b76: Pull complete Step #4: 069b70ca1828: Pull complete Step #4: 082a5c4ba783: Pull complete Step #4: aeb889ce9374: Pull complete Step #4: b3c77a307741: Pull complete Step #4: 19afa95abd0d: Pull complete Step #4: 3331bfca5447: Pull complete Step #4: ca89507fe8d3: Pull complete Step #4: 093d0a8d4813: Pull complete Step #4: 562130e5e1f0: Pull complete Step #4: c78d65770fdc: Pull complete Step #4: d8a48a39f3bb: Pull complete Step #4: d547270a8392: Pull complete Step #4: cd72b15f7674: Pull complete Step #4: fed123fa2f8a: Pull complete Step #4: 39a8609a58c5: Pull complete Step #4: Digest: sha256:e8550ff2b57077cb14770e2ec5a77bdcd040c602412df65fe7355825f55ed250 Step #4: Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-builder:latest Step #4: ---> d548bd1f3608 Step #4: Step 2/6 : RUN apt-get update && apt install -y cmake Step #4: ---> Running in b78367a80ba2 Step #4: Hit:1 http://archive.ubuntu.com/ubuntu focal InRelease Step #4: Get:2 http://archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] Step #4: Hit:3 http://security.ubuntu.com/ubuntu focal-security InRelease Step #4: Hit:4 http://archive.ubuntu.com/ubuntu focal-backports InRelease Step #4: Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [3726 kB] Step #4: Get:6 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [1439 kB] Step #4: Get:7 http://archive.ubuntu.com/ubuntu focal-updates/universe i386 Packages [941 kB] Step #4: Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main i386 Packages [1132 kB] Step #4: Fetched 7352 kB in 1s (6266 kB/s) Step #4: Reading package lists... Step #4:  Step #4: WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Step #4: Step #4: Reading package lists... Step #4: Building dependency tree... Step #4: Reading state information... Step #4: The following additional packages will be installed: Step #4: cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #4: Suggested packages: Step #4: cmake-doc ninja-build lrzip Step #4: The following NEW packages will be installed: Step #4: cmake cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #4: 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Step #4: Need to get 15.0 MB of archives. Step #4: After this operation, 65.0 MB of additional disk space will be used. Step #4: Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libicu66 amd64 66.1-2ubuntu2.1 [8515 kB] Step #4: Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2 amd64 2.9.10+dfsg-5ubuntu0.20.04.6 [640 kB] Step #4: Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1 amd64 1.34.2-1ubuntu1.3 [80.8 kB] Step #4: Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake-data all 3.16.3-1ubuntu1.20.04.1 [1613 kB] Step #4: Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libarchive13 amd64 3.4.0-2ubuntu1.2 [327 kB] Step #4: Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] Step #4: Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] Step #4: Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake amd64 3.16.3-1ubuntu1.20.04.1 [3668 kB] Step #4: debconf: delaying package configuration, since apt-utils is not installed Step #4: Fetched 15.0 MB in 1s (23.4 MB/s) Step #4: Selecting previously unselected package libicu66:amd64. Step #4: (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17382 files and directories currently installed.) Step #4: Preparing to unpack .../0-libicu66_66.1-2ubuntu2.1_amd64.deb ... Step #4: Unpacking libicu66:amd64 (66.1-2ubuntu2.1) ... Step #4: Selecting previously unselected package libxml2:amd64. Step #4: Preparing to unpack .../1-libxml2_2.9.10+dfsg-5ubuntu0.20.04.6_amd64.deb ... Step #4: Unpacking libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.6) ... Step #4: Selecting previously unselected package libuv1:amd64. Step #4: Preparing to unpack .../2-libuv1_1.34.2-1ubuntu1.3_amd64.deb ... Step #4: Unpacking libuv1:amd64 (1.34.2-1ubuntu1.3) ... Step #4: Selecting previously unselected package cmake-data. Step #4: Preparing to unpack .../3-cmake-data_3.16.3-1ubuntu1.20.04.1_all.deb ... Step #4: Unpacking cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #4: Selecting previously unselected package libarchive13:amd64. Step #4: Preparing to unpack .../4-libarchive13_3.4.0-2ubuntu1.2_amd64.deb ... Step #4: Unpacking libarchive13:amd64 (3.4.0-2ubuntu1.2) ... Step #4: Selecting previously unselected package libjsoncpp1:amd64. Step #4: Preparing to unpack .../5-libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... Step #4: Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #4: Selecting previously unselected package librhash0:amd64. Step #4: Preparing to unpack .../6-librhash0_1.3.9-1_amd64.deb ... Step #4: Unpacking librhash0:amd64 (1.3.9-1) ... Step #4: Selecting previously unselected package cmake. Step #4: Preparing to unpack .../7-cmake_3.16.3-1ubuntu1.20.04.1_amd64.deb ... Step #4: Unpacking cmake (3.16.3-1ubuntu1.20.04.1) ... Step #4: Setting up libicu66:amd64 (66.1-2ubuntu2.1) ... Step #4: Setting up libuv1:amd64 (1.34.2-1ubuntu1.3) ... Step #4: Setting up librhash0:amd64 (1.3.9-1) ... Step #4: Setting up cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #4: Setting up libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.6) ... Step #4: Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #4: Setting up libarchive13:amd64 (3.4.0-2ubuntu1.2) ... Step #4: Setting up cmake (3.16.3-1ubuntu1.20.04.1) ... Step #4: Processing triggers for libc-bin (2.31-0ubuntu9.12) ... Step #4: Removing intermediate container b78367a80ba2 Step #4: ---> a4c92c2d9ac0 Step #4: Step 3/6 : RUN git clone --depth 1 https://github.com/openbabel/openbabel.git Step #4: ---> Running in b8e55ecb0af0 Step #4: Cloning into 'openbabel'... 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Step #4: Removing intermediate container b8e55ecb0af0 Step #4: ---> b4830ad65a31 Step #4: Step 4/6 : COPY build.sh $SRC Step #4: ---> 7300fad6d56c Step #4: Step 5/6 : WORKDIR $SRC/openbabel Step #4: ---> Running in e311daff4b98 Step #4: Removing intermediate container e311daff4b98 Step #4: ---> b9ee983490c6 Step #4: Step 6/6 : ENV OLD_LLVMPASS 1 Step #4: ---> Running in e3ee2e1e4a6e Step #4: Removing intermediate container e3ee2e1e4a6e Step #4: ---> da224bbd3905 Step #4: Successfully built da224bbd3905 Step #4: Successfully tagged gcr.io/oss-fuzz/openbabel:latest Finished Step #4 Starting Step #5 - "srcmap" Step #5 - "srcmap": Already have image: gcr.io/oss-fuzz/openbabel Step #5 - "srcmap": ++ tempfile Step #5 - "srcmap": + SRCMAP=/tmp/file25dMKL Step #5 - "srcmap": + echo '{}' Step #5 - "srcmap": + PATHS_TO_SCAN=/src Step #5 - "srcmap": + [[ c++ == \g\o ]] Step #5 - "srcmap": ++ find /src -name .git -type d Step #5 - "srcmap": + for DOT_GIT_DIR in $(find $PATHS_TO_SCAN -name ".git" -type d) Step #5 - "srcmap": ++ dirname /src/openbabel/.git Step #5 - "srcmap": + GIT_DIR=/src/openbabel Step #5 - "srcmap": + cd /src/openbabel Step #5 - "srcmap": ++ git config --get remote.origin.url Step #5 - "srcmap": + GIT_URL=https://github.com/openbabel/openbabel.git Step #5 - "srcmap": ++ git rev-parse HEAD Step #5 - "srcmap": + GIT_REV=bcb790049bf43415a0b99adf725249c3f4da02bf Step #5 - "srcmap": + jq_inplace /tmp/file25dMKL '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "bcb790049bf43415a0b99adf725249c3f4da02bf" }' Step #5 - "srcmap": ++ tempfile Step #5 - "srcmap": + F=/tmp/filePNyIFb Step #5 - "srcmap": + cat /tmp/file25dMKL Step #5 - "srcmap": + jq '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "bcb790049bf43415a0b99adf725249c3f4da02bf" }' Step #5 - "srcmap": + mv /tmp/filePNyIFb /tmp/file25dMKL Step #5 - "srcmap": ++ find /src -name .svn -type d Step #5 - "srcmap": ++ find /src -name .hg -type d Step #5 - "srcmap": + '[' '' '!=' '' ']' Step #5 - "srcmap": + cat /tmp/file25dMKL Step #5 - "srcmap": + rm /tmp/file25dMKL Step #5 - "srcmap": { Step #5 - "srcmap": "/src/openbabel": { Step #5 - "srcmap": "type": "git", Step #5 - "srcmap": "url": "https://github.com/openbabel/openbabel.git", Step #5 - "srcmap": "rev": "bcb790049bf43415a0b99adf725249c3f4da02bf" Step #5 - "srcmap": } Step #5 - "srcmap": } Finished Step #5 - "srcmap" Starting Step #6 - "compile-libfuzzer-introspector-x86_64" Step #6 - "compile-libfuzzer-introspector-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #6 - "compile-libfuzzer-introspector-x86_64": --------------------------------------------------------------- Step #6 - "compile-libfuzzer-introspector-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #6 - "compile-libfuzzer-introspector-x86_64": --------------------------------------------------------------- Step #6 - "compile-libfuzzer-introspector-x86_64": CC=clang Step #6 - "compile-libfuzzer-introspector-x86_64": CXX=clang++ Step #6 - "compile-libfuzzer-introspector-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -flegacy-pass-manager -flto -fno-inline-functions -fuse-ld=gold -Wno-unused-command-line-argument -fsanitize=fuzzer-no-link -g Step #6 - "compile-libfuzzer-introspector-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -flegacy-pass-manager -flto -fno-inline-functions -fuse-ld=gold -Wno-unused-command-line-argument -fsanitize=fuzzer-no-link -stdlib=libc++ -g Step #6 - "compile-libfuzzer-introspector-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=introspector -Cdebuginfo=1 -Cforce-frame-pointers Step #6 - "compile-libfuzzer-introspector-x86_64": --------------------------------------------------------------- Step #6 - "compile-libfuzzer-introspector-x86_64": + mkdir build Step #6 - "compile-libfuzzer-introspector-x86_64": + cd build Step #6 - "compile-libfuzzer-introspector-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #6 - "compile-libfuzzer-introspector-x86_64": -- The C compiler identification is Clang 15.0.0 Step #6 - "compile-libfuzzer-introspector-x86_64": -- The CXX compiler identification is Clang 15.0.0 Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting C compiler ABI info Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting C compiler ABI info - done Step #6 - "compile-libfuzzer-introspector-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting C compile features Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting C compile features - done Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting CXX compiler ABI info Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting CXX compiler ABI info - done Step #6 - "compile-libfuzzer-introspector-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting CXX compile features Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting CXX compile features - done Step #6 - "compile-libfuzzer-introspector-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #6 - "compile-libfuzzer-introspector-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #6 - "compile-libfuzzer-introspector-x86_64": of CMake. Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #6 - "compile-libfuzzer-introspector-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #6 - "compile-libfuzzer-introspector-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #6 - "compile-libfuzzer-introspector-x86_64": behavior and not rely on setting a policy to OLD. Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": -- Using included inchi library. Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #6 - "compile-libfuzzer-introspector-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #6 - "compile-libfuzzer-introspector-x86_64": libxml2 not found - disabling CML support! Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for conio.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for conio.h - not found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for sys/time.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for sys/time.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for time.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for time.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for strings.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for strings.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for rpc/xdr.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for rpc/xdr.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for regex.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for regex.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for C++ include sstream Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for C++ include sstream - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for rint Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for rint - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for snprintf Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for snprintf - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for sranddev Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for sranddev - not found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for strcasecmp Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for strcasecmp - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for strncasecmp Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for strncasecmp - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for dlopen in dl Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for dlopen in dl - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for sys/types.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for sys/types.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for stdint.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for stdint.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for stddef.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for stddef.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Check size of clock_t Step #6 - "compile-libfuzzer-introspector-x86_64": -- Check size of clock_t - done Step #6 - "compile-libfuzzer-introspector-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #6 - "compile-libfuzzer-introspector-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #6 - "compile-libfuzzer-introspector-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #6 - "compile-libfuzzer-introspector-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-1.1.0. Step #6 - "compile-libfuzzer-introspector-x86_64": -- JSON formats will be supported. Using RapidJSON 1.1.0 at /src/openbabel/external/rapidjson-1.1.0/include Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #6 - "compile-libfuzzer-introspector-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #6 - "compile-libfuzzer-introspector-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #6 - "compile-libfuzzer-introspector-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #6 - "compile-libfuzzer-introspector-x86_64": -- Found Threads: TRUE Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for getopt Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for getopt - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- GUI will not be built Step #6 - "compile-libfuzzer-introspector-x86_64": -- Found PythonInterp: /usr/local/bin/python3.8 (found version "3.8.3") Step #6 - "compile-libfuzzer-introspector-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #6 - "compile-libfuzzer-introspector-x86_64": Compatibility with CMake < 2.8.12 will be removed from a future version of Step #6 - "compile-libfuzzer-introspector-x86_64": CMake. Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #6 - "compile-libfuzzer-introspector-x86_64": CMake that the project does not need compatibility with older versions. Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": -- Configuring done Step #6 - "compile-libfuzzer-introspector-x86_64": -- Generating done Step #6 - "compile-libfuzzer-introspector-x86_64": -- Build files have been written to: /src/openbabel/build Step #6 - "compile-libfuzzer-introspector-x86_64": ++ nproc Step #6 - "compile-libfuzzer-introspector-x86_64": + make -j 32 Step #6 - "compile-libfuzzer-introspector-x86_64": [ 0%] Generating atomtyp.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 0%] Generating bondtyp.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 1%] Generating phmodeldata.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 1%] Generating torlib.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 1%] Generating resdata.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 1%] Generating types.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 1%] Generating atomizationenergies.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 2%] Generating spacegroups.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 2%] Generating ringtyp.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 2%] Built target data_headers Step #6 - "compile-libfuzzer-introspector-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (_ival) delete [] _ival; Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (_ival) delete [] _ival; Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": _ival=nullptr; Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (_ival) delete [] _ival; Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (_ival) delete [] _ival; Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (!IsNearZero(val[2])) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (_ival) delete [] _ival; Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (_ival) delete [] _ival; Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #6 - "compile-libfuzzer-introspector-x86_64": if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(v1.length(), 1.0e-3) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": || IsNearZero(v2.length(), 1.0e-3)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rab = OBForceField::VectorLengthDerivative(da, db); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rl.SetFixAtoms(fixed); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": combinations *= rotor->GetResolution().size(); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rotorKeys.AddRotor(rotor->GetResolution().size()); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rl.SetFixAtoms(fixed); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rl.SetFixAtoms(fixed); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": combinations *= rotor->GetResolution().size(); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:/src/openbabel/src/builder.cpp:5310:: 19:note:  'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64":  OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64": warning: ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  if (bond2 == VZero || v1 == VZero) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (bond2 == VZero || v1 == VZero) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rl.SetFixAtoms(fixed); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See SetFixedBonds()") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:/src/openbabel/src/builder.cpp:35938:: 21: note: warning: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64":  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": combinations *= rotor->GetResolution().size(); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:/src/openbabel/src/builder.cpp:36138: :26: note: warning: expanded from macro 'OB_DEPRECATED_MSG''operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] ^ Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5:  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp/src/openbabel/include/openbabel/rotor.h:449::5: 430note: :23: 'GetResolution' has been explicitly marked deprecated herewarning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64":  OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^/src/openbabel/build/include/openbabel/babelconfig.h Step #6 - "compile-libfuzzer-introspector-x86_64": :38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]/src/openbabel/include/openbabel/math/vector3.h Step #6 - "compile-libfuzzer-introspector-x86_64":  ^: Step #6 - "compile-libfuzzer-introspector-x86_64": 273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: /src/openbabel/src/builder.cpp:432:28: warning: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: /src/openbabel/build/include/openbabel/babelconfig.hnote: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": :38:38: OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64":  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: ^expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNear(worstE, bestE, 1.0e-3)) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG'/src/openbabel/src/builder.cpp: Step #6 - "compile-libfuzzer-introspector-x86_64": 434: #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]/src/openbabel/src/forcefield.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": :1721:31 else if (bond3 == VZero): warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ weight = 1 / rotor->GetResolution().size(); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h Step #6 - "compile-libfuzzer-introspector-x86_64": :449:/src/openbabel/include/openbabel/math/vector3.h:273:55:: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:450::38:3823: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": : warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond3 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond3 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: /src/openbabel/src/mol.cpp:2786:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (atom->GetVector() != VZero)note: Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 'operator==' has been explicitly marked deprecated here/src/openbabel/include/openbabel/math/vector3.h:278 Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": :5: note: 'operator!=' has been explicitly marked deprecated here/src/openbabel/build/include/openbabel/babelconfig.h: Step #6 - "compile-libfuzzer-introspector-x86_64": 38:38: OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mol.cpp:2801:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (!hasX && !IsNearZero(atom->x())) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]: Step #6 - "compile-libfuzzer-introspector-x86_64": 197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note:  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond2 == VZero)/src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (!hasY && !IsNearZero(atom->y())) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mol.cpp:2824:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (!hasX && !IsNearZero(atom->x())) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (!hasY && !IsNearZero(atom->y())) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (!hasZ && !IsNearZero(atom->z())) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond3 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond3 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond4 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond3 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond4 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(scale)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:2539:11/src/openbabel/src/builder.cpp::568 warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": :28: if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #6 - "compile-libfuzzer-introspector-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond3 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5/src/openbabel/include/openbabel/obutil.h:: note: 189:'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.")3: Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38: 38: note: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 'IsNear' has been explicitly marked deprecated here #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond4 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (bond5 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mol.cpp:3250:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ((*ringit)->PathSize() == 5) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.")/src/openbabel/src/mol.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": :3272 ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]: Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": else if ((*ringit)->PathSize() == 6) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mol.cpp:3341:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": loopSize = (*ringit)->PathSize(); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/ring.h/src/openbabel/src/builder.cpp::65720::528:: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64":  else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": note: 'PathSize' has been explicitly marked deprecated here/src/openbabel/include/openbabel/math/vector3.h:273:5: note:  Step #6 - "compile-libfuzzer-introspector-x86_64": 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use Size() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": ^ #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNear(e_n2, _e_n1, _econv) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNear(e_n2, _e_n1, _econv) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp/src/openbabel/build/include/openbabel/babelconfig.h:38:38:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": mol.GetFirstAtom()->GetHyb(); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": : note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/mol.h:287:5 #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": : ^ Step #6 - "compile-libfuzzer-introspector-x86_64": note: 'GetFirstAtom' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(length)) {/src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (bond1 == VZero) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note:  Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": expanded from macro 'OB_DEPRECATED_MSG' #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(length)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(length_ji)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(length_jk)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(length_jl)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(length_ji)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(length_jk)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(length_jl)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 2 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": 3 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": _vres.push_back(rotor->GetResolution()); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 3 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See HasFixedBonds()") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rotor->SetNumCoords(mol.NumAtoms()*3); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("See HasFixedBonds()") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rotor->SetEvalAtoms(eval); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rotor->SetDelta(delta); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Has no effect.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (!IsNearZero(pcharge)) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 34 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 51 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 5 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use vector version instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": gd->GetOriginVector(origin); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": quadrupole.Set(i[0], i[1], value); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": quadrupole.Set(i[1], i[0], value); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #6 - "compile-libfuzzer-introspector-x86_64": else if (vs[0][0] == '2') Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 9 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 3 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #6 - "compile-libfuzzer-introspector-x86_64": switch(pRD->ReactionType) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^~~~~~~~~~~~~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #6 - "compile-libfuzzer-introspector-x86_64": switch(pRD->ReactionType) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^~~~~~~~~~~~~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #6 - "compile-libfuzzer-introspector-x86_64": string path = (found == string::npos) ? "" : path.substr(0, found); Step #6 - "compile-libfuzzer-introspector-x86_64":  ~~~~ ^~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": gd->GetOriginVector(origin); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 2 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": OBAtom *atm = pmol->GetFirstAtom(); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #6 - "compile-libfuzzer-introspector-x86_64": switch (chirality) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^~~~~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #6 - "compile-libfuzzer-introspector-x86_64": if (fabs(lf) > MAXABS) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ~ ^~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #6 - "compile-libfuzzer-introspector-x86_64": #define MAXABS INT_MAX-2 Step #6 - "compile-libfuzzer-introspector-x86_64":  ~~~~~~~^~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #6 - "compile-libfuzzer-introspector-x86_64": if (fabs(lf) > MAXABS) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ~ ^~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #6 - "compile-libfuzzer-introspector-x86_64": #define MAXABS INT_MAX-2 Step #6 - "compile-libfuzzer-introspector-x86_64":  ~~~~~~~^~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #6 - "compile-libfuzzer-introspector-x86_64": if (fabs(lf) > MAXABS) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ~ ^~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #6 - "compile-libfuzzer-introspector-x86_64": #define MAXABS INT_MAX-2 Step #6 - "compile-libfuzzer-introspector-x86_64":  ~~~~~~~^~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #6 - "compile-libfuzzer-introspector-x86_64": (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ~~ ^~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #6 - "compile-libfuzzer-introspector-x86_64": #define MAXABS INT_MAX-2 Step #6 - "compile-libfuzzer-introspector-x86_64":  ~~~~~~~^~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #6 - "compile-libfuzzer-introspector-x86_64": (float)maxint[1] - (float)minint[1] >= MAXABS || Step #6 - "compile-libfuzzer-introspector-x86_64":  ~~ ^~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #6 - "compile-libfuzzer-introspector-x86_64": #define MAXABS INT_MAX-2 Step #6 - "compile-libfuzzer-introspector-x86_64":  ~~~~~~~^~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #6 - "compile-libfuzzer-introspector-x86_64": if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #6 - "compile-libfuzzer-introspector-x86_64":  ~~ ^~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #6 - "compile-libfuzzer-introspector-x86_64": #define MAXABS INT_MAX-2 Step #6 - "compile-libfuzzer-introspector-x86_64":  ~~~~~~~^~ Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #6 - "compile-libfuzzer-introspector-x86_64": while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #6 - "compile-libfuzzer-introspector-x86_64": while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #6 - "compile-libfuzzer-introspector-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 2 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 6 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rab = OBForceField::VectorLengthDerivative(da, db); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": pFF->UpdateCoordinates(molCopy); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": pFF->UpdateCoordinates(molCopy); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 2 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 9 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #6 - "compile-libfuzzer-introspector-x86_64": static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ~~~~~~~~~~~ ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #6 - "compile-libfuzzer-introspector-x86_64": static const float dashpattern[] = {5., 5.}; Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #6 - "compile-libfuzzer-introspector-x86_64": static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNearZero(v1.length(), 1.0e-3) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": || IsNearZero(v2.length(), 1.0e-3)) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 4 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": 2 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 76%] Linking CXX static library libopenbabel.a Step #6 - "compile-libfuzzer-introspector-x86_64": [ 76%] Built target openbabel Step #6 - "compile-libfuzzer-introspector-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #6 - "compile-libfuzzer-introspector-x86_64": // / \ Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #6 - "compile-libfuzzer-introspector-x86_64": // / \ Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #6 - "compile-libfuzzer-introspector-x86_64": // \ Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #6 - "compile-libfuzzer-introspector-x86_64": // \ Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereoperceptiontest.cpp: ^310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #6 - "compile-libfuzzer-introspector-x86_64": // \ Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #6 - "compile-libfuzzer-introspector-x86_64": // \ Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #6 - "compile-libfuzzer-introspector-x86_64": switch (units.at(i).type) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^~~~~~~~~~~~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #6 - "compile-libfuzzer-introspector-x86_64": switch (units.at(i).type) { Step #6 - "compile-libfuzzer-introspector-x86_64":  ^~~~~~~~~~~~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #6 - "compile-libfuzzer-introspector-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #6 - "compile-libfuzzer-introspector-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 88%] Linking CXX executable ../bin/obabel Step #6 - "compile-libfuzzer-introspector-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #6 - "compile-libfuzzer-introspector-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 6 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 3 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 2 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": x = m2.Get( i, j ); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": m3.Set(i,j, m2(i,j) ); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": Diagonal.Set(i, j, 0.0); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": Diagonal.Set(0, 0, randomizer.NextFloat()); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rnd.Set(0,1, rnd.Get(1,0)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rnd.Set(0,1, rnd.Get(1,0)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rnd.Set(0,2, rnd.Get(2,0)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rnd.Set(0,2, rnd.Get(2,0)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rnd.Set(1,2, rnd.Get(2,1)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": rnd.Set(1,2, rnd.Get(2,1)); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNear(psa , 29.46)) { // value from JOELib2 Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 17 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": 6 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64":  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 24 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : Fuzz introspector is running Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : Running introspector on ld-temp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : Main function filename: /src/openbabel/tools/obabel.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : Main function is non-empty Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : This means a main function is in the source code rather in the libfuzzer library, and thus we do not care about it. We only want to study the actual fuzzers. Exiting this run. Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : Fuzz introspector is running Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : Running introspector on ld-temp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : This is a fuzzer, performing analysis Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 2] : 10:18:50 : Using default configuration Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : Logging next yaml tile to /src/fuzzerLogFile-0-TNl1UajKgE.data.yaml Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : Wrapping all functions Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : Fuzz introspector is running Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : Running introspector on ld-temp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : This is a fuzzer, performing analysis Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 2] : 10:18:50 : Using default configuration Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : Logging next yaml tile to /src/fuzzerLogFile-0-LvtlHQKv7K.data.yaml Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:50 : Wrapping all functions Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:51 : Fuzz introspector is running Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:51 : Running introspector on ld-temp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:51 : Main function filename: /src/openbabel/test/roundtrip.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:51 : Main function is non-empty Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:51 : This means a main function is in the source code rather in the libfuzzer library, and thus we do not care about it. We only want to study the actual fuzzers. Exiting this run. Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:54 : Ended wrapping all functions Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:54 : Ended wrapping all functions Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:56 : Finished introspector module Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:56 : Finished introspector module Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:58 : Fuzz introspector is running Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:58 : Running introspector on ld-temp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:58 : Main function filename: /src/openbabel/build/test/test_runner.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:58 : Main function is non-empty Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:18:58 : This means a main function is in the source code rather in the libfuzzer library, and thus we do not care about it. We only want to study the actual fuzzers. Exiting this run. Step #6 - "compile-libfuzzer-introspector-x86_64": clang-15: error: unable to execute command: Segmentation fault (core dumped) Step #6 - "compile-libfuzzer-introspector-x86_64": clang-15: error: linker command failed due to signal (use -v to see invocation) Step #6 - "compile-libfuzzer-introspector-x86_64": make[2]: *** [tools/CMakeFiles/obabel.dir/build.make:98: bin/obabel] Error 254 Step #6 - "compile-libfuzzer-introspector-x86_64": make[1]: *** [CMakeFiles/Makefile2:1047: tools/CMakeFiles/obabel.dir/all] Error 2 Step #6 - "compile-libfuzzer-introspector-x86_64": make[1]: *** Waiting for unfinished jobs.... Step #6 - "compile-libfuzzer-introspector-x86_64": clang-15: error: unable to execute command: Segmentation fault (core dumped) Step #6 - "compile-libfuzzer-introspector-x86_64": clang-15: error: linker command failed due to signal (use -v to see invocation) Step #6 - "compile-libfuzzer-introspector-x86_64": make[2]: *** [test/CMakeFiles/fuzz_obconversion_sdf.dir/build.make:98: bin/fuzz_obconversion_sdf] Error 254 Step #6 - "compile-libfuzzer-introspector-x86_64": make[1]: *** [CMakeFiles/Makefile2:1151: test/CMakeFiles/fuzz_obconversion_sdf.dir/all] Error 2 Step #6 - "compile-libfuzzer-introspector-x86_64": clang-15: error: unable to execute command: Segmentation fault (core dumped) Step #6 - "compile-libfuzzer-introspector-x86_64": clang-15: error: linker command failed due to signal (use -v to see invocation) Step #6 - "compile-libfuzzer-introspector-x86_64": make[2]: *** [test/CMakeFiles/fuzz_obconversion_smiles.dir/build.make:98: bin/fuzz_obconversion_smiles] Error 254 Step #6 - "compile-libfuzzer-introspector-x86_64": make[1]: *** [CMakeFiles/Makefile2:1125: test/CMakeFiles/fuzz_obconversion_smiles.dir/all] Error 2 Step #6 - "compile-libfuzzer-introspector-x86_64": [100%] Built target roundtrip Step #6 - "compile-libfuzzer-introspector-x86_64": clang-15: error: unable to execute command: Segmentation fault (core dumped) Step #6 - "compile-libfuzzer-introspector-x86_64": clang-15: error: linker command failed due to signal (use -v to see invocation) Step #6 - "compile-libfuzzer-introspector-x86_64": make[2]: *** [test/CMakeFiles/test_runner.dir/build.make:1090: bin/test_runner] Error 254 Step #6 - "compile-libfuzzer-introspector-x86_64": make[1]: *** [CMakeFiles/Makefile2:1073: test/CMakeFiles/test_runner.dir/all] Error 2 Step #6 - "compile-libfuzzer-introspector-x86_64": make: *** [Makefile:146: all] Error 2 Step #6 - "compile-libfuzzer-introspector-x86_64": ******************************************************************************** Step #6 - "compile-libfuzzer-introspector-x86_64": Failed to build. Step #6 - "compile-libfuzzer-introspector-x86_64": To reproduce, run: Step #6 - "compile-libfuzzer-introspector-x86_64": python infra/helper.py build_image openbabel Step #6 - "compile-libfuzzer-introspector-x86_64": python infra/helper.py build_fuzzers --sanitizer introspector --engine libfuzzer --architecture x86_64 openbabel Step #6 - "compile-libfuzzer-introspector-x86_64": ******************************************************************************** Finished Step #6 - "compile-libfuzzer-introspector-x86_64" ERROR ERROR: build step 6 "gcr.io/cloud-builders/docker" failed: step exited with non-zero status: 1