starting build "340b82a0-b034-4494-a120-c8aed904b247" FETCHSOURCE BUILD Starting Step #0 Step #0: Already have image (with digest): gcr.io/cloud-builders/git Step #0: Cloning into 'oss-fuzz'... Finished Step #0 Starting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1" Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Already have image (with digest): gcr.io/cloud-builders/docker Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Sending build context to Docker daemon 7.168kB Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Step 1/5 : FROM gcr.io/oss-fuzz-base/base-builder Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": latest: Pulling from oss-fuzz-base/base-builder Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b549f31133a9: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": ef3c76f7df30: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 9f8f643d8006: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b64057a12e1c: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 662006bb0807: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 4b503ca9d9bc: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": f1a29e744437: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a2a22f967804: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": e72648080e63: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 945b5a62f111: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a33fbe52522f: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": cb8adac1e4ac: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6ce5e7ad829b: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 78b3cc2fa6e6: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 197024c931b9: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 940045afa063: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 1a3163cb01c1: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a2a22f967804: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 7ea3debb8cbd: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 2b97e04a97b5: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": f8a36e1c021e: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 3c9abd7d8840: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": e72648080e63: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": f92ce4f9f90d: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a8835054d016: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b685c4d35c3a: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": dac9741d43d2: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": dc9f433701a6: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 44fc7f7b3c67: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 945b5a62f111: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 67a3febf6e4c: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 981575c1df4c: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 98a640299daa: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 2820a6581e2a: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 82f096e556a3: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6b6d59cb5bb8: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b172b1ba4696: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6a11c270d7cc: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": d9b527ce6e49: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 2869f64c54c1: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 8d2570283fa5: Pulling fs layer Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": dac9741d43d2: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": cb8adac1e4ac: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a33fbe52522f: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 7ea3debb8cbd: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 940045afa063: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 2b97e04a97b5: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6ce5e7ad829b: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": f8a36e1c021e: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 197024c931b9: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 78b3cc2fa6e6: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 3c9abd7d8840: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": dc9f433701a6: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": f92ce4f9f90d: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 44fc7f7b3c67: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a8835054d016: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b685c4d35c3a: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 67a3febf6e4c: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b172b1ba4696: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 981575c1df4c: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 2869f64c54c1: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 2820a6581e2a: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 98a640299daa: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6a11c270d7cc: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 8d2570283fa5: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6b6d59cb5bb8: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": d9b527ce6e49: Waiting Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 9f8f643d8006: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 9f8f643d8006: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 662006bb0807: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": f1a29e744437: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": f1a29e744437: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a2a22f967804: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a2a22f967804: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b64057a12e1c: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b64057a12e1c: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b549f31133a9: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b549f31133a9: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a33fbe52522f: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a33fbe52522f: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": cb8adac1e4ac: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": cb8adac1e4ac: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": ef3c76f7df30: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": ef3c76f7df30: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6ce5e7ad829b: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6ce5e7ad829b: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 78b3cc2fa6e6: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 78b3cc2fa6e6: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 197024c931b9: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 197024c931b9: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 940045afa063: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 940045afa063: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 1a3163cb01c1: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 1a3163cb01c1: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 2b97e04a97b5: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 2b97e04a97b5: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 7ea3debb8cbd: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 7ea3debb8cbd: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 945b5a62f111: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 945b5a62f111: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": f92ce4f9f90d: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": f8a36e1c021e: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": f8a36e1c021e: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 3c9abd7d8840: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a8835054d016: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a8835054d016: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b685c4d35c3a: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b685c4d35c3a: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": dac9741d43d2: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": dac9741d43d2: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": dc9f433701a6: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 44fc7f7b3c67: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 44fc7f7b3c67: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 67a3febf6e4c: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 67a3febf6e4c: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b549f31133a9: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": e72648080e63: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": e72648080e63: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 2820a6581e2a: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 981575c1df4c: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 981575c1df4c: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 82f096e556a3: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 82f096e556a3: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 98a640299daa: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 98a640299daa: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6b6d59cb5bb8: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6b6d59cb5bb8: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": d9b527ce6e49: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": d9b527ce6e49: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6a11c270d7cc: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6a11c270d7cc: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b172b1ba4696: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b172b1ba4696: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 8d2570283fa5: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 2869f64c54c1: Verifying Checksum Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 2869f64c54c1: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 4b503ca9d9bc: Download complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": ef3c76f7df30: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 9f8f643d8006: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b64057a12e1c: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 662006bb0807: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 4b503ca9d9bc: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": f1a29e744437: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a2a22f967804: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": e72648080e63: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 945b5a62f111: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a33fbe52522f: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": cb8adac1e4ac: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6ce5e7ad829b: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 78b3cc2fa6e6: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 197024c931b9: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 940045afa063: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 1a3163cb01c1: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 7ea3debb8cbd: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 2b97e04a97b5: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": f8a36e1c021e: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 3c9abd7d8840: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": f92ce4f9f90d: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": a8835054d016: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b685c4d35c3a: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": dac9741d43d2: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": dc9f433701a6: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 44fc7f7b3c67: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 67a3febf6e4c: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 981575c1df4c: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 98a640299daa: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 2820a6581e2a: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 82f096e556a3: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6b6d59cb5bb8: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": b172b1ba4696: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 6a11c270d7cc: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": d9b527ce6e49: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 2869f64c54c1: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 8d2570283fa5: Pull complete Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Digest: sha256:a4271b062282b1b60e392f6054a42ac413023120d26b14c4dc46e9afebb6e6bc Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-builder:latest Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": ---> cdba03bb9c46 Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Step 2/5 : RUN apt-get update && apt install -y cmake Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": ---> Running in 394563fcc0c1 Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Hit:1 http://archive.ubuntu.com/ubuntu focal InRelease Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Get:2 http://archive.ubuntu.com/ubuntu focal-updates InRelease [128 kB] Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Get:3 http://security.ubuntu.com/ubuntu focal-security InRelease [128 kB] Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Get:4 http://archive.ubuntu.com/ubuntu focal-backports InRelease [128 kB] Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Fetched 383 kB in 1s (549 kB/s) Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Reading package lists... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1":  Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Reading package lists... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Building dependency tree... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Reading state information... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": The following packages were automatically installed and are no longer required: Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": autotools-dev libsigsegv2 m4 Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Use 'apt autoremove' to remove them. Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": The following additional packages will be installed: Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Suggested packages: Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": cmake-doc ninja-build lrzip Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": The following NEW packages will be installed: Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": cmake cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Need to get 15.0 MB of archives. Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": After this operation, 65.0 MB of additional disk space will be used. Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libicu66 amd64 66.1-2ubuntu2.1 [8515 kB] Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2 amd64 2.9.10+dfsg-5ubuntu0.20.04.10 [640 kB] Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1 amd64 1.34.2-1ubuntu1.5 [80.9 kB] Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake-data all 3.16.3-1ubuntu1.20.04.1 [1613 kB] Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libarchive13 amd64 3.4.0-2ubuntu1.5 [327 kB] Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake amd64 3.16.3-1ubuntu1.20.04.1 [3668 kB] Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": debconf: delaying package configuration, since apt-utils is not installed Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Fetched 15.0 MB in 1s (24.6 MB/s) Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Selecting previously unselected package libicu66:amd64. Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17483 files and directories currently installed.) Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Preparing to unpack .../0-libicu66_66.1-2ubuntu2.1_amd64.deb ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Unpacking libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Selecting previously unselected package libxml2:amd64. Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Preparing to unpack .../1-libxml2_2.9.10+dfsg-5ubuntu0.20.04.10_amd64.deb ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Unpacking libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.10) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Selecting previously unselected package libuv1:amd64. Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Preparing to unpack .../2-libuv1_1.34.2-1ubuntu1.5_amd64.deb ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Unpacking libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Selecting previously unselected package cmake-data. Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Preparing to unpack .../3-cmake-data_3.16.3-1ubuntu1.20.04.1_all.deb ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Unpacking cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Selecting previously unselected package libarchive13:amd64. Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Preparing to unpack .../4-libarchive13_3.4.0-2ubuntu1.5_amd64.deb ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Unpacking libarchive13:amd64 (3.4.0-2ubuntu1.5) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Selecting previously unselected package libjsoncpp1:amd64. Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Preparing to unpack .../5-libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Selecting previously unselected package librhash0:amd64. Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Preparing to unpack .../6-librhash0_1.3.9-1_amd64.deb ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Unpacking librhash0:amd64 (1.3.9-1) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Selecting previously unselected package cmake. Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Preparing to unpack .../7-cmake_3.16.3-1ubuntu1.20.04.1_amd64.deb ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Unpacking cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Setting up libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Setting up libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Setting up librhash0:amd64 (1.3.9-1) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Setting up cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Setting up libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.10) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Setting up libarchive13:amd64 (3.4.0-2ubuntu1.5) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Setting up cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Processing triggers for libc-bin (2.31-0ubuntu9.18) ... Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Removing intermediate container 394563fcc0c1 Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": ---> f2ca1c3e2497 Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Step 3/5 : RUN git clone --depth 1 https://github.com/openbabel/openbabel.git Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": ---> Running in 747feac1d0bd Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Cloning into 'openbabel'... 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Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Removing intermediate container 747feac1d0bd Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": ---> 5198cf057faf Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Step 4/5 : COPY *.sh $SRC/ Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": ---> be361c706c7e Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Step 5/5 : WORKDIR $SRC/openbabel Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": ---> Running in 88e9ce9eb2b3 Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Removing intermediate container 88e9ce9eb2b3 Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": ---> 44c34367d49f Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Successfully built 44c34367d49f Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Successfully tagged gcr.io/oss-fuzz/openbabel:latest Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1": Successfully tagged us-central1-docker.pkg.dev/oss-fuzz/unsafe/openbabel:latest Finished Step #1 - "build-4c5cefd7-24c3-4dac-8a0a-ddf21da45dc1" Starting Step #2 - "srcmap" Step #2 - "srcmap": Already have image: gcr.io/oss-fuzz/openbabel Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + SRCMAP=/tmp/filejQvseO Step #2 - "srcmap": + echo '{}' Step #2 - "srcmap": + PATHS_TO_SCAN=/src Step #2 - "srcmap": + [[ c++ == \g\o ]] Step #2 - "srcmap": ++ find /src -name .git -type d Step #2 - "srcmap": + for DOT_GIT_DIR in $(find $PATHS_TO_SCAN -name ".git" -type d) Step #2 - "srcmap": ++ dirname /src/openbabel/.git Step #2 - "srcmap": + GIT_DIR=/src/openbabel Step #2 - "srcmap": + cd /src/openbabel Step #2 - "srcmap": ++ git config --get remote.origin.url Step #2 - "srcmap": + GIT_URL=https://github.com/openbabel/openbabel.git Step #2 - "srcmap": ++ git rev-parse HEAD Step #2 - "srcmap": + GIT_REV=889c350feb179b43aa43985799910149d4eaa2bc Step #2 - "srcmap": + jq_inplace /tmp/filejQvseO '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "889c350feb179b43aa43985799910149d4eaa2bc" }' Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + F=/tmp/file6mgBMa Step #2 - "srcmap": + cat /tmp/filejQvseO Step #2 - "srcmap": + jq '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "889c350feb179b43aa43985799910149d4eaa2bc" }' Step #2 - "srcmap": + mv /tmp/file6mgBMa /tmp/filejQvseO Step #2 - "srcmap": ++ find /src -name .svn -type d Step #2 - "srcmap": ++ find /src -name .hg -type d Step #2 - "srcmap": + '[' '' '!=' '' ']' Step #2 - "srcmap": + cat /tmp/filejQvseO Step #2 - "srcmap": + rm /tmp/filejQvseO Step #2 - "srcmap": { Step #2 - "srcmap": "/src/openbabel": { Step #2 - "srcmap": "type": "git", Step #2 - "srcmap": "url": "https://github.com/openbabel/openbabel.git", Step #2 - "srcmap": "rev": "889c350feb179b43aa43985799910149d4eaa2bc" Step #2 - "srcmap": } Step #2 - "srcmap": } Finished Step #2 - "srcmap" Starting Step #3 - "compile-afl-address-x86_64" Step #3 - "compile-afl-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": vm.mmap_rnd_bits = 28 Step #3 - "compile-afl-address-x86_64": Copying precompiled AFL++ Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": AFL++ target compilation setup: Step #3 - "compile-afl-address-x86_64": AFL_IGNORE_UNKNOWN_ENVS=1 Step #3 - "compile-afl-address-x86_64": AFL_QUIET=1 Step #3 - "compile-afl-address-x86_64": AFL_IGNORE_PROBLEMS=1 Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": done. Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": CC=/src/aflplusplus/afl-clang-fast Step #3 - "compile-afl-address-x86_64": CXX=/src/aflplusplus/afl-clang-fast++ Step #3 - "compile-afl-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope Step #3 - "compile-afl-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -stdlib=libc++ Step #3 - "compile-afl-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": + export 'CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -stdlib=libc++ -std=c++17' Step #3 - "compile-afl-address-x86_64": + CXXFLAGS='-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -stdlib=libc++ -std=c++17' Step #3 - "compile-afl-address-x86_64": + sed -i 's/CMAKE_CXX_STANDARD 11/CMAKE_CXX_STANDARD 17/g' CMakeLists.txt Step #3 - "compile-afl-address-x86_64": + sed -i 's/std::random/\/\/std::random/g' test/addhtest.cpp test/aliastest.cpp test/aligntest.cpp test/aromatest.cpp test/atom.cpp test/automorphismtest.cpp test/bond.cpp test/buildertest.cpp test/canonconsistenttest.cpp test/canonfragmenttest.cpp test/canonstabletest.cpp test/cansmi.cpp test/carspacegrouptest.cpp test/charge_gasteiger.cpp test/charge_mmff94.cpp test/cifspacegrouptest.cpp test/cistranstest.cpp test/cmlreadfile.cpp test/conversion.cpp test/conversiontest.cpp test/datatest.cpp test/ffgaff.cpp test/ffghemical.cpp test/ffmmff94.cpp test/ffuff.cpp test/formalcharge.cpp test/format.cpp test/formula.cpp test/graphsymtest.cpp test/gziptest.cpp test/implicitHtest.cpp test/inchiwrite.cpp test/internalcoord.cpp test/invalidsmarts.cpp test/invalidsmiles.cpp test/isomorphismtest.cpp test/iterators.cpp test/logp_psa.cpp test/lssrtest.cpp test/maereadertest.cpp test/math.cpp test/mmff94validate.cpp test/mol.cpp test/multicmltest.cpp test/obmolbenchmark.cpp test/obtest.cpp test/pdbreadfile.cpp test/periodictest.cpp test/phmodel.cpp test/regressionstest.cpp test/residue.cpp test/ringtest.cpp test/rotortest.cpp test/roundtrip.cpp test/shuffletest.cpp test/smartsparse.cpp test/smartstest.cpp test/smilesmatch.cpp test/smilestest.cpp test/smileytest.cpp test/spectrophoretest.cpp test/squareplanartest.cpp test/stereoperceptiontest.cpp test/stereotest.cpp test/strip.cpp test/tautomertest.cpp test/tetrahedraltest.cpp test/tetranonplanartest.cpp test/tetraplanartest.cpp test/uniqueidtest.cpp test/unitcell.cpp test/zipstream.cpp Step #3 - "compile-afl-address-x86_64": + mkdir build Step #3 - "compile-afl-address-x86_64": + cd build Step #3 - "compile-afl-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #3 - "compile-afl-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #3 - "compile-afl-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #3 - "compile-afl-address-x86_64": CMake. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #3 - "compile-afl-address-x86_64": CMake that the project does not need compatibility with older versions. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- The C compiler identification is Clang 22.0.0 Step #3 - "compile-afl-address-x86_64": -- The CXX compiler identification is Clang 22.0.0 Step #3 - "compile-afl-address-x86_64": -- Detecting C compiler ABI info Step #3 - "compile-afl-address-x86_64": -- Detecting C compiler ABI info - done Step #3 - "compile-afl-address-x86_64": -- Check for working C compiler: /src/aflplusplus/afl-clang-fast - skipped Step #3 - "compile-afl-address-x86_64": -- Detecting C compile features Step #3 - "compile-afl-address-x86_64": -- Detecting C compile features - done Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compiler ABI info Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compiler ABI info - done Step #3 - "compile-afl-address-x86_64": -- Check for working CXX compiler: /src/aflplusplus/afl-clang-fast++ - skipped Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compile features Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compile features - done Step #3 - "compile-afl-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #3 - "compile-afl-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #3 - "compile-afl-address-x86_64": of CMake. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #3 - "compile-afl-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #3 - "compile-afl-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #3 - "compile-afl-address-x86_64": behavior and not rely on setting a policy to OLD. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Using included inchi library. Step #3 - "compile-afl-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #3 - "compile-afl-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #3 - "compile-afl-address-x86_64": libxml2 not found - disabling CML support! Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #3 - "compile-afl-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #3 - "compile-afl-address-x86_64": -- Looking for conio.h Step #3 - "compile-afl-address-x86_64": -- Looking for conio.h - not found Step #3 - "compile-afl-address-x86_64": -- Looking for sys/time.h Step #3 - "compile-afl-address-x86_64": -- Looking for sys/time.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for time.h Step #3 - "compile-afl-address-x86_64": -- Looking for time.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for strings.h Step #3 - "compile-afl-address-x86_64": -- Looking for strings.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for regex.h Step #3 - "compile-afl-address-x86_64": -- Looking for regex.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for C++ include sstream Step #3 - "compile-afl-address-x86_64": -- Looking for C++ include sstream - found Step #3 - "compile-afl-address-x86_64": -- Looking for rint Step #3 - "compile-afl-address-x86_64": -- Looking for rint - found Step #3 - "compile-afl-address-x86_64": -- Looking for snprintf Step #3 - "compile-afl-address-x86_64": -- Looking for snprintf - found Step #3 - "compile-afl-address-x86_64": -- Looking for sranddev Step #3 - "compile-afl-address-x86_64": -- Looking for sranddev - not found Step #3 - "compile-afl-address-x86_64": -- Looking for strcasecmp Step #3 - "compile-afl-address-x86_64": -- Looking for strcasecmp - found Step #3 - "compile-afl-address-x86_64": -- Looking for strncasecmp Step #3 - "compile-afl-address-x86_64": -- Looking for strncasecmp - found Step #3 - "compile-afl-address-x86_64": -- Looking for xdrstdio_create Step #3 - "compile-afl-address-x86_64": -- Looking for xdrstdio_create - found Step #3 - "compile-afl-address-x86_64": -- Looking for dlopen in dl Step #3 - "compile-afl-address-x86_64": -- Looking for dlopen in dl - found Step #3 - "compile-afl-address-x86_64": -- Looking for sys/types.h Step #3 - "compile-afl-address-x86_64": -- Looking for sys/types.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for stdint.h Step #3 - "compile-afl-address-x86_64": -- Looking for stdint.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for stddef.h Step #3 - "compile-afl-address-x86_64": -- Looking for stddef.h - found Step #3 - "compile-afl-address-x86_64": -- Check size of clock_t Step #3 - "compile-afl-address-x86_64": -- Check size of clock_t - done Step #3 - "compile-afl-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #3 - "compile-afl-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #3 - "compile-afl-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #3 - "compile-afl-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #3 - "compile-afl-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #3 - "compile-afl-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #3 - "compile-afl-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #3 - "compile-afl-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #3 - "compile-afl-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #3 - "compile-afl-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #3 - "compile-afl-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #3 - "compile-afl-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #3 - "compile-afl-address-x86_64": -- Found Threads: TRUE Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #3 - "compile-afl-address-x86_64": -- Looking for getopt Step #3 - "compile-afl-address-x86_64": -- Looking for getopt - found Step #3 - "compile-afl-address-x86_64": -- GUI will not be built Step #3 - "compile-afl-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #3 - "compile-afl-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #3 - "compile-afl-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #3 - "compile-afl-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": Call Stack (most recent call first): Step #3 - "compile-afl-address-x86_64": test/CMakeLists.txt:233 (include) Step #3 - "compile-afl-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.11.13") Step #3 - "compile-afl-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #3 - "compile-afl-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #3 - "compile-afl-address-x86_64": CMake. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #3 - "compile-afl-address-x86_64": CMake that the project does not need compatibility with older versions. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Configuring done (5.7s) Step #3 - "compile-afl-address-x86_64": -- Generating done (0.1s) Step #3 - "compile-afl-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #3 - "compile-afl-address-x86_64": ++ nproc Step #3 - "compile-afl-address-x86_64": + make -j 32 Step #3 - "compile-afl-address-x86_64": [ 0%] Generating atomtyp.h Step #3 - "compile-afl-address-x86_64": [ 0%] Generating bondtyp.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating phmodeldata.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating resdata.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating torlib.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating types.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating atomizationenergies.h Step #3 - "compile-afl-address-x86_64": [ 2%] Generating spacegroups.h Step #3 - "compile-afl-address-x86_64": [ 2%] Generating ringtyp.h Step #3 - "compile-afl-address-x86_64": [ 2%] Built target data_headers Step #3 - "compile-afl-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #3 - "compile-afl-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #3 - "compile-afl-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #3 - "compile-afl-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #3 - 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"compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #3 - "compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #3 - "compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #3 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #3 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #3 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #3 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #3 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 82 | _ival=nullptr; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #3 - "compile-afl-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast<int>((*i)-In file included from /src/openbabel/src/forcefield.cpp:34: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": >Pat 118 | hS if (_ivial) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: ze()note: ) == siz'_ival' has been explicitly marked deprecated heree Step #3 - "compile-afl-address-x86_64": ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 105'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  |  OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1523 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1539 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1572 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2788 | if (atom->GetVector() != VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2805 | if (!hasY && !IsNearZero(atom->y())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2826 | if (!hasX && !IsNearZero(atom->x())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: /src/openbabel/src/forcefield.cpp:/src/openbabel/src/builder.cpp:310:19: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations]warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1193:32 310 | if (bo: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3252 | if ((*ringitn Step #3 - "compile-afl-address-x86_64": d )->Pat1193h | combinatio2ns *= rotor->S=ize() ===GetResolution().size();  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": V5) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: Z/src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated heree Step #3 - "compile-afl-address-x86_64": r 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPREnote: CA'PathSize' has been explicitly marked deprecated hereTED_ Step #3 - "compile-afl-address-x86_64": Mo SG(msg65 | ) [[ depreca|| OBted( v1 == Vmsg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": Z_DEPRECeATroED) _MSG("{U Step #3 - "compile-afl-address-x86_64": se |  ^ Step #3 - "compile-afl-address-x86_64":  /src/openbabel/include/openbabel/math/vector3.hS:ize() inste/src/openbabel/src/forcefield.cppa:d1213":33): Step #3 - "compile-afl-address-x86_64":  | warning:  ^ Step #3 - "compile-afl-address-x86_64": 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 273 :5/src/openbabel/build/include/openbabel/babelconfig.h1213 | : 38 : 38 : rotorKeys.Anote: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": : note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": ddRo273tor(r | otor->GetResolution()OB_D.sEPRECATED_MSG("Use ize()); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": v/src/openbabel/include/openbabel/rotor.hector3::IsApprox() inst:449ead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": :/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(m5s:g) [[de precated(msg)]]note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MS/src/openbabel/src/mol.cpp:3274:29: G Step #3 - "compile-afl-address-x86_64": ("See G| etTorsion ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_Mwarning: Va'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations]lues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: Step #3 - "compile-afl-address-x86_64": 3274 | else if ((*ringit)expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #defin->PathSize() == 6) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": SG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 359 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 361 | e else i Of (bond2 B_DEPRECATED== VZer_MSGo)(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 430 | if (bond1 == VZe/src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": ro) 1444 | rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633 |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273::5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 633 | OB5_DEPRECATED_MSG("See SetFixedB: note: onds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_38:38: DEnote: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": PRECA 38 | TED_MSG(#define OB_DEPRECATE"UD_MSG(msg) [[deprecaseted(m vesg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": ctor3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:432:28: /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 1457 | combinations *= rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 432 | 449 | OB_DEPRECAT elED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": se 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG/src/openbabel/src/forcefield.cpp(":1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": Use 1482 | vecto r3::IsAppro rotorKex(y[i] = generato) irnste.Nead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.hxtInt() %:38 rotor->:38: note: GetResexpanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": ol 38u | #tion().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.hd:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": efine OB_DE 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": P 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": RECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 434 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[dep/src/openbabel/src/forcefield.cppre:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": cat 1622 | rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": e 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": d(msg)]] Step #3 - "compile-afl-address-x86_64": | [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": ^ 1635 | Step #3 - "compile-afl-address-x86_64":  combinations *= rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp/src/openbabel/src/builder.cpp:450:23:: 1685:43warning: : 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]warning: Step #3 - "compile-afl-address-x86_64":  'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 450 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:51685 | fo: rnote:  'operator==' has been explicitly marked deprecated here( Step #3 - "compile-afl-address-x86_64":  unsigne273d |   iOnBt_D EjP R=E CA0TE;D _jM SvecGteotrR3e::sIoslAuptpiorno(x)(.)s iiznes(t)e;a dj.+"+)) { Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": | | ^ Step #3 - "compile-afl-address-x86_64": ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:/src/openbabel/include/openbabel/rotor.h38:: 449:5note: : expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 38 | #define 449O | B _ D E PORBE_CDAETPERDE_CMASTGE(Dm_sMgS)G ([["dSeeper eGceatteTdo(rmssigo)n]V]al Step #3 - "compile-afl-address-x86_64": u e| s( ^) Step #3 - "compile-afl-address-x86_64": ") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 452 | else if (bo/src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": n 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": d2 ==/src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": VZero)/src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": 38 | |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECAT #define OBED_M_DEPRECATED_MSG(msg) [[deprSecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": G("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1721 | 38 | #define weight = 1 / rotor- OB_DEPRECATED_MSG(m>GetResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": sg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 454 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 469 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 471 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 473 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 494 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 496 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 498 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 514 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 516 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 518 | else if (bo/src/openbabel/src/forcefield.cpp:2420:nd3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsAppr9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": ox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 2420 |  /src/openbabel/build/include/openbabel/babelconfig.h : 38:if38: ( Isnote: Neexpanded from macro 'OB_DEPRECATED_MSG'ar Step #3 - "compile-afl-address-x86_64": Zero( sca38l | e ) ) # de{fine Step #3 - "compile-afl-address-x86_64": O| B_ ^D Step #3 - "compile-afl-address-x86_64": EPRE/src/openbabel/include/openbabel/obutil.hCAT:197:ED_3:M SGnote: (ms'IsNearZero' has been explicitly marked deprecated hereg) Step #3 - "compile-afl-address-x86_64": [[dep197r | e c aOBt_eDdE(PmsRgE)C]AT]ED Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": | | ^ Step #3 - "compile-afl-address-x86_64": ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[dep/src/openbabel/src/builder.cpprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": :520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 520 | else if (bond4 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 533 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 535 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEP/src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": RECATED_ 2657 | if (IsNear(e_n2, e_n1, 1.0e-MSG("Use vector3::IsAppr7)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": ox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_/src/openbabel/include/openbabel/obutil.h:189DEPRECA:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": TED_MSG(ms 189 | g) OB_DEPRECATED_[MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": [dep 38 | #defrecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ine OB Step #3 - "compile-afl-address-x86_64": _DEPRECATED_MSG(msg) [/src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 537 | else if (bond3 == VZer[deprecatedo) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": (ms38g | ) ] ]  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: #define OB_DEPRECAT warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": ED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  2725 | if (IsNear(e_n2, e_n1/src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": , 539 | else  if (bond4 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": . 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 0e-7)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": [ 564 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38/src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 566 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  | #define OB_D/src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 568 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": EPRECATED_MSG(/src/openbabel/src/builder.cpp:570:28: warning: msg) [[deprecate'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]d(ms Step #3 - "compile-afl-address-x86_64": g)]] Step #3 - "compile-afl-address-x86_64": 570 | else if (| bond4 ^== VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 572 | else if (bond5 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 660 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 718 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: /src/openbabel/src/builder.cpp:720:28: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 720 |  Step #3 - "compile-afl-address-x86_64": 3039 |  eifl (IssNee iafr(e_n2, _(eb_onnd2 1==, VZ e_ro)econv Step #3 - "compile-afl-address-x86_64": )|  Step #3 - "compile-afl-address-x86_64": ^| Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h/src/openbabel/include/openbabel/math/vector3.h::273:5189::3:  note: note: 'IsNear' has been explicitly marked deprecated here'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": 189 | 273 OB_ | D E P REC OBATE_DEDPR_EMSG(CA"TEDU_sMSG(e "IsAUppsroxe( ve)ct oir3:n:IssAtpeaprdox(")) Step #3 - "compile-afl-address-x86_64": i n| stead ^ Step #3 - "compile-afl-address-x86_64": .")/src/openbabel/build/include/openbabel/babelconfig.h:38 Step #3 - "compile-afl-address-x86_64": :38 :| note: ^expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": 38/src/openbabel/build/include/openbabel/babelconfig.h | :38 :38:  #dnote: eexpanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": fi ne O38 | B_ D#EdePfRiEne COBAT_ED_DEMPRESG(CAmTEDsg)_ M[[deSpGr(mesg)c a[[tdeedp(rmescga)t]e]d( Step #3 - "compile-afl-address-x86_64": m s| g)]] ^ Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3735 | if (IsNearZero(length)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3802 | if (IsNearZero(length)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp :1427| :17: ^ Step #3 - "compile-afl-address-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h :197:3: [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #3 - "compile-afl-address-x86_64": note: 1427'IsNearZero' has been explicitly marked deprecated here |  Step #3 - "compile-afl-address-x86_64": i197f |  (OB_DEPREbondC1A T==E DVZ Step #3 - "compile-afl-address-x86_64": e r| o) ^ Step #3 - "compile-afl-address-x86_64": { Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h| : ^37 Step #3 - "compile-afl-address-x86_64": :29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": | #def 273 | OB_DEPRECATED_MSGi(ne OB_D"Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define EPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4006 | ifOB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 452 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 443 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 355 | rotor->SetDelta(delta); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #3 - "compile-afl-address-x86_64": 34 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #3 - "compile-afl-address-x86_64": 5 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 589 | gd->GetOriginVector(origin); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #3 - "compile-afl-address-x86_64": 51 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #3 - "compile-afl-address-x86_64": 310 | else if (vs[0][0] == '2') Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #3 - "compile-afl-address-x86_64": 9 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #3 - "compile-afl-address-x86_64": 911 | switch(pRD->ReactionType) Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #3 - "compile-afl-address-x86_64": 990 | switch(pRD->ReactionType) Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #3 - "compile-afl-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #3 - "compile-afl-address-x86_64": |  ~~~~ ^~~~ Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | gd->GetOriginVector(origin); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": 158 | switch (chirality) { Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~ Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #3 - "compile-afl-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS ||1 warning Step #3 - "compile-afl-address-x86_64": | generated. Step #3 - "compile-afl-address-x86_64":  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #3 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #3 - "compile-afl-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #3 - "compile-afl-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #3 - "compile-afl-address-x86_64": 6 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1523 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/charges/fromfile.cpp:114:30: warning: object backing the pointer 'name' will be destroyed at the end of the full-expression [-Wdangling-assignment-gsl] Step #3 - "compile-afl-address-x86_64": 114 | char *f = name = (char*)res->GetAtomID( a ).c_str(); Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #3 - "compile-afl-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~~~~~ ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #3 - "compile-afl-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #3 - "compile-afl-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 9 warnings generated. Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 4 warnings generated. Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #3 - "compile-afl-address-x86_64": [ 75%] Built target openbabel Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #3 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #3 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:111:12: warning: null passed to a callee that requires a non-null argument [-Wnonnull] Step #3 - "compile-afl-address-x86_64": 111 | return nullptr; Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 255 | // / \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 270 | // / \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 285 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 287 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 310 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 432 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 134 | OB_ASS/src/openbabel/test/stereotest.cppE:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": 102 | switcRh (Tu(nIistNse.ar(RAD_at(TO_DEG * roit).type) { Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": or.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereotest.cpp:/src/openbabel/build/include/openbabel/babelconfig.h:38:38132:13: : warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": note: 132 | switcexpanded from macro 'OB_DEPRECATED_MSG'h (unit Step #3 - "compile-afl-address-x86_64": s.at(i).type) { Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #3 - "compile-afl-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #3 - "compile-afl-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Linking CXX executable ../bin/obabel Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 92%] Linking CXX executable ../bin/fuzz_convert Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #3 - "compile-afl-address-x86_64": 7 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #3 - "compile-afl-address-x86_64": [ 95%] Built target fuzz_obconversion_smiles Step #3 - "compile-afl-address-x86_64": [ 95%] Built target fuzz_obconversion_sdf Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Built target roundtrip Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Built target obabel Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Built target fuzz_convert Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 190 | x = m2.Get( i, j ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 6 warnings generated. Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 17 warnings generated. Step #3 - "compile-afl-address-x86_64": 24 warnings generated. Step #3 - "compile-afl-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #3 - "compile-afl-address-x86_64": [100%] Built target test_runner Step #3 - "compile-afl-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/afl-address-x86_64/ Finished Step #3 - "compile-afl-address-x86_64" Starting Step #4 - "build-check-afl-address-x86_64" Step #4 - "build-check-afl-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #4 - "build-check-afl-address-x86_64": Unable to find image 'gcr.io/oss-fuzz-base/base-runner:latest' locally Step #4 - "build-check-afl-address-x86_64": latest: Pulling from oss-fuzz-base/base-runner Step #4 - "build-check-afl-address-x86_64": b549f31133a9: Already exists Step #4 - "build-check-afl-address-x86_64": ef3c76f7df30: Already exists Step #4 - "build-check-afl-address-x86_64": 9f8f643d8006: Already exists Step #4 - "build-check-afl-address-x86_64": 0f48af65b814: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 633a0e05339d: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 3177fed33998: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 2e478429a198: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 4f862654912a: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 4d5ecc5a85a3: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 861dbe526d45: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": f0d22c3bd001: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": c7365ba546a7: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 81305a35774f: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 084b00e4fd2a: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 2571f26ef59d: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": f3ad3c26378e: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 23630c9e3597: Pulling fs 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3177fed33998: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 3177fed33998: Download complete Step #4 - "build-check-afl-address-x86_64": 0f48af65b814: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 0f48af65b814: Download complete Step #4 - "build-check-afl-address-x86_64": 4f862654912a: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 4f862654912a: Download complete Step #4 - "build-check-afl-address-x86_64": 633a0e05339d: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 633a0e05339d: Download complete Step #4 - "build-check-afl-address-x86_64": 861dbe526d45: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 861dbe526d45: Download complete Step #4 - "build-check-afl-address-x86_64": f0d22c3bd001: Download complete Step #4 - "build-check-afl-address-x86_64": 0f48af65b814: Pull complete Step #4 - "build-check-afl-address-x86_64": c7365ba546a7: Download complete Step #4 - "build-check-afl-address-x86_64": 2571f26ef59d: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 2571f26ef59d: Download complete Step #4 - "build-check-afl-address-x86_64": 084b00e4fd2a: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 084b00e4fd2a: Download complete Step #4 - "build-check-afl-address-x86_64": f3ad3c26378e: Download complete Step #4 - "build-check-afl-address-x86_64": 686f4cb8643a: Download complete Step #4 - "build-check-afl-address-x86_64": 2e478429a198: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 2e478429a198: Download complete Step #4 - "build-check-afl-address-x86_64": 633a0e05339d: Pull complete Step #4 - "build-check-afl-address-x86_64": 4d5ecc5a85a3: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 4d5ecc5a85a3: Download complete Step #4 - "build-check-afl-address-x86_64": 3177fed33998: Pull complete Step #4 - "build-check-afl-address-x86_64": 485022339309: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 485022339309: Download complete Step #4 - "build-check-afl-address-x86_64": bacda3c2d798: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": bacda3c2d798: Download complete Step #4 - "build-check-afl-address-x86_64": 6456ed930b42: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 6456ed930b42: Download complete Step #4 - "build-check-afl-address-x86_64": 2e478429a198: Pull complete Step #4 - "build-check-afl-address-x86_64": 68403e1b2d67: Download complete Step #4 - "build-check-afl-address-x86_64": 81305a35774f: Download complete Step #4 - "build-check-afl-address-x86_64": d64a40b43ad5: Download complete Step #4 - "build-check-afl-address-x86_64": 4f862654912a: Pull complete Step #4 - "build-check-afl-address-x86_64": c4fc3ca540a9: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": c4fc3ca540a9: Download complete Step #4 - "build-check-afl-address-x86_64": c1d227e471d8: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": c1d227e471d8: Download complete Step #4 - "build-check-afl-address-x86_64": c57fafada48f: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": c57fafada48f: Download complete Step #4 - "build-check-afl-address-x86_64": 23630c9e3597: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 23630c9e3597: Download complete Step #4 - "build-check-afl-address-x86_64": e9cb1af2d3fd: Download complete Step #4 - "build-check-afl-address-x86_64": 4d5ecc5a85a3: Pull complete Step #4 - "build-check-afl-address-x86_64": 861dbe526d45: Pull complete Step #4 - "build-check-afl-address-x86_64": f0d22c3bd001: Pull complete Step #4 - "build-check-afl-address-x86_64": c7365ba546a7: Pull complete Step #4 - "build-check-afl-address-x86_64": 81305a35774f: Pull complete Step #4 - "build-check-afl-address-x86_64": 084b00e4fd2a: Pull complete Step #4 - "build-check-afl-address-x86_64": 2571f26ef59d: Pull complete Step #4 - "build-check-afl-address-x86_64": f3ad3c26378e: Pull complete Step #4 - "build-check-afl-address-x86_64": 23630c9e3597: Pull complete Step #4 - "build-check-afl-address-x86_64": 686f4cb8643a: Pull complete Step #4 - "build-check-afl-address-x86_64": e9cb1af2d3fd: Pull complete Step #4 - "build-check-afl-address-x86_64": 485022339309: Pull complete Step #4 - "build-check-afl-address-x86_64": bacda3c2d798: Pull complete Step #4 - "build-check-afl-address-x86_64": c57fafada48f: Pull complete Step #4 - "build-check-afl-address-x86_64": 68403e1b2d67: Pull complete Step #4 - "build-check-afl-address-x86_64": 6456ed930b42: Pull complete Step #4 - "build-check-afl-address-x86_64": c1d227e471d8: Pull complete Step #4 - "build-check-afl-address-x86_64": c4fc3ca540a9: Pull complete Step #4 - "build-check-afl-address-x86_64": d64a40b43ad5: Pull complete Step #4 - "build-check-afl-address-x86_64": Digest: sha256:fca20b650077b304d8fda564b4e8e271b7605c6c867f322be5273900ded9d1b8 Step #4 - "build-check-afl-address-x86_64": Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-runner:latest Step #4 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp64rvvabi/fuzz_obconversion_sdf Step #4 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp64rvvabi/fuzz_obconversion_smiles Step #4 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp64rvvabi/fuzz_convert Finished Step #4 - "build-check-afl-address-x86_64" Starting Step #5 Step #5: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #5 Starting Step #6 Step #6: Already have image: gcr.io/oss-fuzz/openbabel Step #6: adding: SanitizerCoverageLTO.so (deflated 69%) Step #6: adding: SanitizerCoveragePCGUARD.so (deflated 70%) Step #6: adding: afl-addseeds (deflated 57%) Step #6: adding: afl-analyze (deflated 55%) Step #6: adding: afl-c++ (deflated 57%) Step #6: adding: afl-c++.8 (deflated 55%) Step #6: adding: afl-cc (deflated 57%) Step #6: adding: afl-cc.8 (deflated 55%) Step #6: adding: afl-clang (deflated 57%) Step #6: adding: afl-clang++ (deflated 57%) Step #6: adding: afl-clang-fast (deflated 57%) Step #6: adding: afl-clang-fast++ (deflated 57%) Step #6: adding: afl-clang-fast++.8 (deflated 55%) Step #6: adding: afl-clang-fast.8 (deflated 55%) Step #6: adding: afl-clang-lto (deflated 57%) Step #6: adding: afl-clang-lto++ (deflated 57%) Step #6: adding: afl-clang-lto++.8 (deflated 55%) Step #6: adding: afl-clang-lto.8 (deflated 55%) Step #6: adding: afl-cmin (deflated 70%) Step #6: adding: afl-cmin.bash (deflated 65%) Step #6: adding: afl-cmin.py (deflated 71%) Step #6: adding: afl-compiler-rt-32.o (deflated 54%) Step #6: adding: afl-compiler-rt-64.o (deflated 67%) Step #6: adding: afl-compiler-rt.o (deflated 67%) Step #6: adding: afl-fuzz (deflated 55%) Step #6: adding: afl-g++ (deflated 57%) Step #6: adding: afl-gcc (deflated 57%) Step #6: adding: afl-gotcpu (deflated 62%) Step #6: adding: afl-ld-lto (deflated 62%) Step #6: adding: afl-llvm-dict2file.so (deflated 69%) Step #6: adding: afl-llvm-lto-instrumentlist.so (deflated 71%) Step #6: adding: afl-llvm-pass.so (deflated 69%) Step #6: adding: afl-llvm-rt-lto-32.o (deflated 20%) Step #6: adding: afl-llvm-rt-lto-64.o (deflated 20%) Step #6: adding: afl-llvm-rt-lto.o (deflated 20%) Step #6: adding: afl-lto (deflated 57%) Step #6: adding: afl-lto++ (deflated 57%) Step #6: adding: afl-lto++.8 (deflated 55%) Step #6: adding: afl-lto.8 (deflated 55%) Step #6: adding: afl-persistent-config (deflated 59%) Step #6: adding: afl-plot (deflated 65%) Step #6: adding: afl-showmap (deflated 55%) Step #6: adding: afl-system-config (deflated 63%) Step #6: adding: afl-tmin (deflated 55%) Step #6: adding: afl-whatsup (deflated 69%) Step #6: adding: afl-wine-trace (deflated 70%) Step #6: adding: afl_options.txt (deflated 20%) Step #6: adding: cmplog-instructions-pass.so (deflated 71%) Step #6: adding: cmplog-routines-pass.so (deflated 70%) Step #6: adding: cmplog-switches-pass.so (deflated 70%) Step #6: adding: compare-transform-pass.so (deflated 69%) Step #6: adding: dynamic_list.txt (deflated 76%) Step #6: adding: fuzz_convert (deflated 65%) Step #6: adding: fuzz_obconversion_sdf (deflated 65%) Step #6: adding: fuzz_obconversion_smiles (deflated 65%) Step #6: adding: injection-pass.so (deflated 70%) Step #6: adding: libAFLDriver.a (deflated 64%) Step #6: adding: libAFLQemuDriver.a (deflated 65%) Step #6: adding: llvm-symbolizer (deflated 65%) Step #6: adding: split-compares-pass.so (deflated 69%) Step #6: adding: split-switches-pass.so (deflated 70%) Finished Step #6 Starting Step #7 Step #7: Pulling image: gcr.io/oss-fuzz-base/uploader Step #7: Using default tag: latest Step #7: latest: Pulling from oss-fuzz-base/uploader Step #7: c62795f78da9: Pulling fs layer Step #7: d4fceeeb758e: Pulling fs layer Step #7: 5c9125a401ae: Pulling fs layer Step #7: 0062f774e994: Pulling fs layer Step #7: 6b33fd031fac: Pulling fs layer Step #7: 7eb39101e508: Pulling fs layer Step #7: 89257482f398: Pulling fs layer Step #7: 89257482f398: Waiting Step #7: 5c9125a401ae: Download complete Step #7: d4fceeeb758e: Download complete Step #7: 6b33fd031fac: Verifying Checksum Step #7: 6b33fd031fac: Download complete Step #7: 0062f774e994: Verifying Checksum Step #7: 0062f774e994: Download complete Step #7: 89257482f398: Download complete Step #7: c62795f78da9: Verifying Checksum Step #7: c62795f78da9: Download complete Step #7: 7eb39101e508: Verifying Checksum Step #7: 7eb39101e508: Download complete Step #7: c62795f78da9: Pull complete Step #7: d4fceeeb758e: Pull complete Step #7: 5c9125a401ae: Pull complete Step #7: 0062f774e994: Pull complete Step #7: 6b33fd031fac: Pull complete Step #7: 7eb39101e508: Pull complete Step #7: 89257482f398: Pull complete Step #7: Digest: sha256:5717ba63d13b5515063e2a6ccad09fb5bf32a86c8e0798a363d81c2be522e411 Step #7: Status: Downloaded newer image for gcr.io/oss-fuzz-base/uploader:latest Step #7: gcr.io/oss-fuzz-base/uploader:latest Step #7: % Total % Received % Xferd Average Speed Time Time Time Current Step #7: Dload Upload Total Spent Left Speed Step #7: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 816 --:--:-- --:--:-- --:--:-- 820 Finished Step #7 Starting Step #8 Step #8: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #8: % Total % Received % Xferd Average Speed Time Time Time Current Step #8: Dload Upload Total Spent Left Speed Step #8: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 88 81.5M 0 0 88 72.3M 0 93.0M --:--:-- --:--:-- --:--:-- 93.0M 100 81.5M 0 0 100 81.5M 0 71.8M 0:00:01 0:00:01 --:--:-- 71.8M Finished Step #8 Starting Step #9 Step #9: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #9: % Total % Received % Xferd Average Speed Time Time Time Current Step #9: Dload Upload Total Spent Left Speed Step #9: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 292 --:--:-- --:--:-- --:--:-- 291 100 60 0 0 100 60 0 245 --:--:-- --:--:-- --:--:-- 244 Finished Step #9 Starting Step #10 Step #10: Already have image (with digest): gcr.io/cloud-builders/curl Step #10: % Total % Received % Xferd Average Speed Time Time Time Current Step #10: Dload Upload Total Spent Left Speed Step #10: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 168 --:--:-- --:--:-- --:--:-- 168 100 34 0 0 100 34 0 168 --:--:-- --:--:-- --:--:-- 168 Finished Step #10 Starting Step #11 Step #11: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #11 Starting Step #12 - "compile-honggfuzz-address-x86_64" Step #12 - "compile-honggfuzz-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": vm.mmap_rnd_bits = 28 Step #12 - "compile-honggfuzz-address-x86_64": Skipping compilation; using precompiled honggfuzz Step #12 - "compile-honggfuzz-address-x86_64": done. Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": CC=clang Step #12 - "compile-honggfuzz-address-x86_64": CXX=clang++ Step #12 - "compile-honggfuzz-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp Step #12 - "compile-honggfuzz-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp -stdlib=libc++ Step #12 - "compile-honggfuzz-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": + export 'CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp -stdlib=libc++ -std=c++17' Step #12 - "compile-honggfuzz-address-x86_64": + CXXFLAGS='-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp -stdlib=libc++ -std=c++17' Step #12 - "compile-honggfuzz-address-x86_64": + sed -i 's/CMAKE_CXX_STANDARD 11/CMAKE_CXX_STANDARD 17/g' CMakeLists.txt Step #12 - "compile-honggfuzz-address-x86_64": + sed -i 's/std::random/\/\/std::random/g' test/addhtest.cpp test/aliastest.cpp test/aligntest.cpp test/aromatest.cpp test/atom.cpp test/automorphismtest.cpp test/bond.cpp test/buildertest.cpp test/canonconsistenttest.cpp test/canonfragmenttest.cpp test/canonstabletest.cpp test/cansmi.cpp test/carspacegrouptest.cpp test/charge_gasteiger.cpp test/charge_mmff94.cpp test/cifspacegrouptest.cpp test/cistranstest.cpp test/cmlreadfile.cpp test/conversion.cpp test/conversiontest.cpp test/datatest.cpp test/ffgaff.cpp test/ffghemical.cpp test/ffmmff94.cpp test/ffuff.cpp test/formalcharge.cpp test/format.cpp test/formula.cpp test/graphsymtest.cpp test/gziptest.cpp test/implicitHtest.cpp test/inchiwrite.cpp test/internalcoord.cpp test/invalidsmarts.cpp test/invalidsmiles.cpp test/isomorphismtest.cpp test/iterators.cpp test/logp_psa.cpp test/lssrtest.cpp test/maereadertest.cpp test/math.cpp test/mmff94validate.cpp test/mol.cpp test/multicmltest.cpp test/obmolbenchmark.cpp test/obtest.cpp test/pdbreadfile.cpp test/periodictest.cpp test/phmodel.cpp test/regressionstest.cpp test/residue.cpp test/ringtest.cpp test/rotortest.cpp test/roundtrip.cpp test/shuffletest.cpp test/smartsparse.cpp test/smartstest.cpp test/smilesmatch.cpp test/smilestest.cpp test/smileytest.cpp test/spectrophoretest.cpp test/squareplanartest.cpp test/stereoperceptiontest.cpp test/stereotest.cpp test/strip.cpp test/tautomertest.cpp test/tetrahedraltest.cpp test/tetranonplanartest.cpp test/tetraplanartest.cpp test/uniqueidtest.cpp test/unitcell.cpp test/zipstream.cpp Step #12 - "compile-honggfuzz-address-x86_64": + mkdir build Step #12 - "compile-honggfuzz-address-x86_64": + cd build Step #12 - "compile-honggfuzz-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #12 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #12 - "compile-honggfuzz-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #12 - "compile-honggfuzz-address-x86_64": CMake. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #12 - "compile-honggfuzz-address-x86_64": CMake that the project does not need compatibility with older versions. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- The C compiler identification is Clang 22.0.0 Step #12 - "compile-honggfuzz-address-x86_64": -- The CXX compiler identification is Clang 22.0.0 Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compiler ABI info Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compiler ABI info - done Step #12 - "compile-honggfuzz-address-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compile features Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compile features - done Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compiler ABI info Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compiler ABI info - done Step #12 - "compile-honggfuzz-address-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compile features Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compile features - done Step #12 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #12 - "compile-honggfuzz-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #12 - "compile-honggfuzz-address-x86_64": of CMake. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #12 - "compile-honggfuzz-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #12 - "compile-honggfuzz-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #12 - "compile-honggfuzz-address-x86_64": behavior and not rely on setting a policy to OLD. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Using included inchi library. Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #12 - "compile-honggfuzz-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #12 - "compile-honggfuzz-address-x86_64": libxml2 not found - disabling CML support! Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for conio.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for conio.h - not found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/time.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/time.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for time.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for time.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strings.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strings.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for regex.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for regex.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for C++ include sstream Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for C++ include sstream - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for rint Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for rint - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for snprintf Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for snprintf - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sranddev Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sranddev - not found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strcasecmp Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strcasecmp - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strncasecmp Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strncasecmp - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for xdrstdio_create Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for xdrstdio_create - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for dlopen in dl Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for dlopen in dl - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/types.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/types.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stdint.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stdint.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stddef.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stddef.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Check size of clock_t Step #12 - "compile-honggfuzz-address-x86_64": -- Check size of clock_t - done Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #12 - "compile-honggfuzz-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #12 - "compile-honggfuzz-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #12 - "compile-honggfuzz-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #12 - "compile-honggfuzz-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #12 - "compile-honggfuzz-address-x86_64": -- Found Threads: TRUE Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for getopt Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for getopt - found Step #12 - "compile-honggfuzz-address-x86_64": -- GUI will not be built Step #12 - "compile-honggfuzz-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #12 - "compile-honggfuzz-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #12 - "compile-honggfuzz-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #12 - "compile-honggfuzz-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": Call Stack (most recent call first): Step #12 - "compile-honggfuzz-address-x86_64": test/CMakeLists.txt:233 (include) Step #12 - "compile-honggfuzz-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.11.13") Step #12 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #12 - "compile-honggfuzz-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #12 - "compile-honggfuzz-address-x86_64": CMake. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #12 - "compile-honggfuzz-address-x86_64": CMake that the project does not need compatibility with older versions. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Configuring done (6.2s) Step #12 - "compile-honggfuzz-address-x86_64": -- Generating done (0.1s) Step #12 - "compile-honggfuzz-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #12 - "compile-honggfuzz-address-x86_64": ++ nproc Step #12 - "compile-honggfuzz-address-x86_64": + make -j 32 Step #12 - "compile-honggfuzz-address-x86_64": [ 0%] Generating atomtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 0%] Generating bondtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating phmodeldata.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating resdata.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating torlib.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating types.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating atomizationenergies.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Generating ringtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Generating spacegroups.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Built target data_headers Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 82 | _ival=nullptr; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #12 - "compile-honggfuzz-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast<int>((*i)->PathSize()) == size) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] if  Step #12 - "compile-honggfuzz-address-x86_64": (_ival) 1143 | if delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  (IsNear/src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": Zero(v1.length(), 1.0e-3) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 105 |  O/src/openbabel/include/openbabel/obutil.h:197:3: B_DEPRECATED innote: 'IsNearZero' has been explicitly marked deprecated heret Step #12 - "compile-honggfuzz-address-x86_64":  *_ival; 197 // | OB_DEPRECATED!< f Step #12 - "compile-honggfuzz-address-x86_64": |  ^or Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define inte Oger valueBs \deprec_DaEPRECATtedE Step #12 - "compile-honggfuzz-address-x86_64": D [| [de ^pre Step #12 - "compile-honggfuzz-address-x86_64": cated]/src/openbabel/build/include/openbabel/babelconfig.h]:37 Step #12 - "compile-honggfuzz-address-x86_64": :|  ^ Step #12 - "compile-honggfuzz-address-x86_64": 29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #/src/openbabel/src/atom.cpp:define O1144B:_DEPRECATED [10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": [ 1144dep | recat ed]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  || IIn file included from /src/openbabel/src/forcefield.cpp:34: Step #12 - "compile-honggfuzz-address-x86_64": s/src/openbabel/include/openbabel/grid.h:118:N28: eawarning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": rZ 118 | er o( v2 .le nifg (t_ihva()l, )1. 0delete []e-3 _)) i{va Step #12 - "compile-honggfuzz-address-x86_64": | l; ^ Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": note: '_ival' has been explicitly marked deprecated here 197 | Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRE 105CATED Step #12 - "compile-honggfuzz-address-x86_64": |  | ^ Step #12 - "compile-honggfuzz-address-x86_64":  /src/openbabel/build/include/openbabel/babelconfig.h :37OB:_29DE:P RECATnote: Eexpanded from macro 'OB_DEPRECATED'D  Step #12 - "compile-honggfuzz-address-x86_64": int 37 | #define OB_DEPRE CATED [[deprecate d]]* Step #12 - "compile-honggfuzz-address-x86_64": _iv|  ^ Step #12 - "compile-honggfuzz-address-x86_64": al; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1523 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1539 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1572 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 310 | ifwarning: ('GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]bo Step #12 - "compile-honggfuzz-address-x86_64": nd2 == VZero || v1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 1193 | /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPREC ATED comb_MSG("Use vector3::IsApprox(i) inanstead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRtioECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": ns *= rotor->GetResolution()/src/openbabel/src/builder.cpp.s:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": ize() 310 | ; Step #12 - "compile-honggfuzz-address-x86_64": if (bond2 == VZero || v1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273 :5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": | 273 | OB_DEPRECATED_MSG("Use vector3:: ^ Step #12 - "compile-honggfuzz-address-x86_64": IsApprox() instead.")/src/openbabel/include/openbabel/rotor.h: Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": OB_359 | DE if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": P/src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 361 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprRoExCA(T)E Di_nsMtSeGa(d.""Se)e Step #12 - "compile-honggfuzz-address-x86_64": G e| tTo ^r Step #12 - "compile-honggfuzz-address-x86_64": sionV/src/openbabel/build/include/openbabel/babelconfig.hal:u38e:s38(:) ")note:  Step #12 - "compile-honggfuzz-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' |  ^ Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": 38 | /src/openbabel/build/include/openbabel/babelconfig.h : #d38e:f38i:n e Onote: B_expanded from macro 'OB_DEPRECATED_MSG'DEP Step #12 - "compile-honggfuzz-address-x86_64": R ECATED38_ | M S G ( #mdefsign)e [[OdBep_rDeEcPRaEteCdA(TmEsDg_)M]S]G( Step #12 - "compile-honggfuzz-address-x86_64": m s| g) ^ Step #12 - "compile-honggfuzz-address-x86_64": [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64": |  ^/src/openbabel/src/builder.cpp Step #12 - "compile-honggfuzz-address-x86_64": :430/src/openbabel/include/openbabel/rotor.h::23633:: 5: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]note:  Step #12 - "compile-honggfuzz-address-x86_64": 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 633 | 430O | B _ D E PRE C ATED_ MS G (  " Seei fSe t(bFoixned1 dB=o=n dVsZ(e)r"o)) Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": | |  ^ Step #12 - "compile-honggfuzz-address-x86_64": ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:/src/openbabel/include/openbabel/math/vector3.h38:: 273:5:note: expanded from macro 'OB_DEPRECATED_MSG'note:  Step #12 - "compile-honggfuzz-address-x86_64": 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 38 | 273 | # dOeBf_iDnEeP ROEBC_ADETPERD_MESCGA(TE"D_MUSsGe (vmesctgo)r [3[:d:IespArpepcraotex(d)( minssgt)e]a]d. Step #12 - "compile-honggfuzz-address-x86_64": " | ) ^ Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 432 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 434 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38/src/openbabel/src/forcefield.cpp:1372:32: : warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' 1372 |  Step #12 - "compile-honggfuzz-address-x86_64": 38 | fo r (#dj = e0;f j Ge OtResBolut_ion(D).sizeE(); j+P+) {R //E ForC eacAh roTtor EpositioD_n Step #12 - "compile-honggfuzz-address-x86_64": M|  ^ Step #12 - "compile-honggfuzz-address-x86_64": SG(/src/openbabel/include/openbabel/rotor.h:m449:5:s note: g)'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": [[de 449 | prOB_DeEPRECAcaTED_tMSG("eSee dGetT(morsisonVaglues)()") Step #12 - "compile-honggfuzz-address-x86_64": ]]|  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38 Step #12 - "compile-honggfuzz-address-x86_64": :38: | note:  ^expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 450 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 452 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5:/src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRE/src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2788 | CATED_MSG if (atom->GetVector() != VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: note: 'operator==' has been explicitly marked deprecated here'operator!=' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": 278 | OB_D 273EPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": | 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  OB_DEPRECATED_MSG("U/src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": s 2803 | if (!hasX && !IsNearZero(atom->x())) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": e 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": v 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": ector3:/src/openbabel/src/mol.cpp:2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": : 2805 | if (!hasY && !IsNearZero(atom->y())) Step #12 - "compile-honggfuzz-address-x86_64": |  ^Is Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:A3: pnote: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": prox 197 | () OB_D EPRECiATEDn Step #12 - "compile-honggfuzz-address-x86_64": |  ^s Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:t29: note: eexpanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": a d.37 | " #define OB_)DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": [[depr ecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:(38"See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": :38: /src/openbabel/build/include/openbabel/babelconfig.h:note: 38:expanded from macro 'OB_DEPRECATED_MSG'38: Step #12 - "compile-honggfuzz-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG'38 Step #12 - "compile-honggfuzz-address-x86_64": | /src/openbabel/src/mol.cpp:2826:23:  #define warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 38 | O 2826 | if #de (!hafB_Dine OB_DEPRECATED_EMsX &&PSRECA G(!IsNeTmED_MSGasrZero(g)msg) (atom->x()[[) ) Step #12 - "compile-honggfuzz-address-x86_64": d[|  ^ Step #12 - "compile-honggfuzz-address-x86_64": e[precdep/src/openbabel/include/openbabel/obutil.hareted(m:csg)]]197a:3: t Step #12 - "compile-honggfuzz-address-x86_64": |  ^ednote: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": (msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:454:28:  Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_D/src/openbabel/src/forcefield.cpp:1482:52: warning: EPRECATED [[deprecated'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": 1482 | ro/src/openbabel/src/mol.cpp:2828:23: warning: torKey[i] warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]'IsNearZero' is deprecated [-Wdeprecated-declarations]= g Step #12 - "compile-honggfuzz-address-x86_64": e Step #12 - "compile-honggfuzz-address-x86_64": 2828 | 454 | if (!hasY && !IsNeanrZero(atom->y())) Step #12 - "compile-honggfuzz-address-x86_64": | e ^ Step #12 - "compile-honggfuzz-address-x86_64": r/src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": at or.NextInt() % rotor->G197 | OB_DetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ eEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5l Step #12 - "compile-honggfuzz-address-x86_64": se if (bond3 == V: note: |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.hZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": :37'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: :29: note: expanded from macro 'OB_DEPRECATED' 449 | OB Step #12 - "compile-honggfuzz-address-x86_64": 37 |  #define O'operator==' has been explicitly marked deprecated hereB Step #12 - "compile-honggfuzz-address-x86_64": 273 | _DE_DEPRECATED [[deP prRECATED_Mecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  OB_SDGE(PR"/src/openbabel/src/mol.cpp:2830:23: See GetTorsionValuECATED_MSG("Use veces()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.htwarning: or3::IsApprox() inste:38:38: note: ad.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG'/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": 38 | #d38e | f i n2830 #define OB_DEPe | OB_DEPRRE ECATED_MSG(msg) [C ATED_MSG(msg) [[de[deprepc recata if (ted(mse!d(msg)g)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": ]] Step #12 - "compile-honggfuzz-address-x86_64": | hasZ ^ Step #12 - "compile-honggfuzz-address-x86_64":  && !IsNearZero(atom->z())) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 633 | O/src/openbabel/src/builder.cpp:469:23B_DEPRECATED_MSG("See Set:FixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38:  warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 469 | note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1635 | combinations *= rotor->Get273 | OB_DEResoPlutionRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": | () ^.si Step #12 - "compile-honggfuzz-address-x86_64": ze(); Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h| :38:38: ^ note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg) Step #12 - "compile-honggfuzz-address-x86_64": ]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB/src/openbabel/src/builder.cpp:471:28: warning: _'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]DE Step #12 - "compile-honggfuzz-address-x86_64": PRECATED_M 471 | S else if (bond2G =(= "VSZeeer oG)etTorsionVa Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273lu | e s O(B_)DEPRECATED_MS"G(")Use ve Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": c/src/openbabel/build/include/openbabel/babelconfig.h:38:38: tor3::IsApprox()note: insexpanded from macro 'OB_DEPRECATED_MSG'tead Step #12 - "compile-honggfuzz-address-x86_64": .") Step #12 - "compile-honggfuzz-address-x86_64": 38 | #d |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:e38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": f 38 | #defiine OB_DEnPReEC ATED_MSG(msg)O [B[d_epDreEcated(msg)]P] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": RECATED_MSG(msg) [[deprecated(/src/openbabel/src/builder.cpp:473:28: warning: ms'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 473 | g) ] ] else Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[de/src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1685 | for (unsigned int j = 0; j < rotor->Geprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": t| R ^ Step #12 - "compile-honggfuzz-address-x86_64": esolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: /src/openbabel/src/builder.cppnote: :expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 494:23 38 | : warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": # 494 | d if (boend1 == VZerof)i Step #12 - "compile-honggfuzz-address-x86_64": n| e ^ Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECA/src/openbabel/include/openbabel/math/vector3.h:273:5: Tnote: E'operator==' has been explicitly marked deprecated hereD Step #12 - "compile-honggfuzz-address-x86_64": _MSG(msg) 273 | OB_[DE[PRdECATED_MSG("Uesep verctor3::IsAppreoxcated() (instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.hm:38s:g)]] Step #12 - "compile-honggfuzz-address-x86_64": | 38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64":  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here/src/openbabel/src/builder.cpp:496: Step #12 - "compile-honggfuzz-address-x86_64": 28 : warning: 449'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] |  Step #12 - "compile-honggfuzz-address-x86_64": OB_496DE | P R E CAT E D _ M S G (  "Seeles Geet Toirfsi o(nbVoanldu2es( )="= VZero) Step #12 - "compile-honggfuzz-address-x86_64": ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38:/src/openbabel/include/openbabel/math/vector3.h :273:5: note: expanded from macro 'OB_DEPRECATED_MSG'note:  Step #12 - "compile-honggfuzz-address-x86_64": 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 38 | 273 | # deOfBi_nDeE PORBE_CDAETPERDE_CMASTGE(D_"MUSsGe( mvsegc)t o[r[3d:e:pIrseAcpaptreodx((m)s gi)n]s]t Step #12 - "compile-honggfuzz-address-x86_64": e a| d. ^" Step #12 - "compile-honggfuzz-address-x86_64": ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATE/src/openbabel/src/forcefield.cpp:1719:43: warning: D_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64":  1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": : 38 |  /src/openbabel/src/mol.cpp : 3252#:d24e:f inewarning: OB'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations]_D Step #12 - "compile-honggfuzz-address-x86_64": EPRECATE D3252_ | M S G ( m s g ) [i[fde p(r(e*craitnegdi(tm)s-g>)P]a]th Step #12 - "compile-honggfuzz-address-x86_64": S i| ze ^( Step #12 - "compile-honggfuzz-address-x86_64": ) == 5) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 498 65/src/openbabel/src/forcefield.cpp | : 1720 : 13 :O B_Dwarning: EPR'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]EC Step #12 - "compile-honggfuzz-address-x86_64": ATED_MSG("Use 1720S | i z e ( ) i n stiefad "(I)sN Step #12 - "compile-honggfuzz-address-x86_64": e a| r( ^w Step #12 - "compile-honggfuzz-address-x86_64": orstE/src/openbabel/build/include/openbabel/babelconfig.h,: 38b:e38s:t E, note: 1expanded from macro 'OB_DEPRECATED_MSG'.0 Step #12 - "compile-honggfuzz-address-x86_64": e-3)) Step #12 - "compile-honggfuzz-address-x86_64": | 38 ^ | Step #12 - "compile-honggfuzz-address-x86_64":  #d/src/openbabel/include/openbabel/obutil.he:f189i:n3e: OB_note: DE'IsNear' has been explicitly marked deprecated herePR Step #12 - "compile-honggfuzz-address-x86_64": ECATED_MSG(msg )189 [[ | d OBe_pDrEePcRaEtCeAdT(EmDs_gM)S]G]( Step #12 - "compile-honggfuzz-address-x86_64": " U| se ^ Step #12 - "compile-honggfuzz-address-x86_64": IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": : 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 28: /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": warning:  1721 | weight = 1 / rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 449 | OB_DEPRECAT Step #12 - "compile-honggfuzz-address-x86_64": 498ED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG'/src/openbabel/src/mol.cpp: Step #12 - "compile-honggfuzz-address-x86_64": 3274:29: 38 | warning:   'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] # Step #12 - "compile-honggfuzz-address-x86_64": define 3274 | else if ((*ringit)->PathSize() =O=B _D6EP)RE Step #12 - "compile-honggfuzz-address-x86_64": C A| T ^ Step #12 - "compile-honggfuzz-address-x86_64":  | /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h :38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": E38D | _ M S G (#mdefine OB_DEPRECATED sg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": _MSG(msg)/src/openbabel/build/include/openbabel/babelconfig.h:38:38: [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 3343 |  loopSize 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]= (*ringit)->Pa Step #12 - "compile-honggfuzz-address-x86_64": th 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": S 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": i 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": ze(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 514 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 516 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 518 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 520 | else if (bond4 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2420 | if (IsNearZero(scale)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define O/src/openbabel/src/builder.cpp:533B_D:EPRE23: CATwarning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": ED [[dep rec533 | at ed]]  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 535 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 537 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^/src/openbabel/src/forcefield.cpp:2539:11: warning:  Step #12 - "compile-honggfuzz-address-x86_64": 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64":  2539 |  /src/openbabel/include/openbabel/math/vector3.h:273i:f5: (Isnote: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": Ne 273ar | ( e _ n 2O,B_DE e_n1, PRECATE1D._0MeS-G("U3)) {s Step #12 - "compile-honggfuzz-address-x86_64": e v| ector3::IsAppro ^ Step #12 - "compile-honggfuzz-address-x86_64": x() instead.") Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h | : ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | 189:3:  #define note: 'IsNear' has been explicitly marked deprecated hereOB_ Step #12 - "compile-honggfuzz-address-x86_64": DEPRECATE 189 | OBD_M_SDG(msgEPREC) ATED_MS[[depG("Usrecated(mse IsApprox() instead")g)]] Step #12 - "compile-honggfuzz-address-x86_64":  | Step #12 - "compile-honggfuzz-address-x86_64": |  ^ ^ Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)/src/openbabel/src/builder.cpp:539:28]: warning: ]'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64":  539 | Step #12 - "compile-honggfuzz-address-x86_64": | els ^e Step #12 - "compile-honggfuzz-address-x86_64":  if (bond4 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: /src/openbabel/src/forcefield.cpp:'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2657: 56411 | :  warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2657 | if if (b(IsNeaonr(e_n2, e_n1, d11 == VZe.r0e-o) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 7)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^/src/openbabel/include/openbabel/math/vector3.h: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:273:189:3:5 note: :'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": note: 189 |  OB_DE'operator==' has been explicitly marked deprecated herePREC Step #12 - "compile-honggfuzz-address-x86_64": ATED_M 273 | SG("UOB_sDEPe IsApprRECATEDox(_) inMSsteG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATEDa_d") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": M/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": SG38( | m #define OB_DEsPRECATEg) [[dD_MSG(eprecamsg) [[deprecated(msg)ted(]] Step #12 - "compile-honggfuzz-address-x86_64": | msg) ^] Step #12 - "compile-honggfuzz-address-x86_64": ] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 566 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 568 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": | /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 570 | else if (bond4 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 572 | else if (bond5 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note:  ^expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64":  /src/openbabel/build/include/openbabel/babelconfig.h:3838: | 38 :  #note: deexpanded from macro 'OB_DEPRECATED_MSG'fi Step #12 - "compile-honggfuzz-address-x86_64": n e OB_38D | E PRE CATED_ #define OB_DEPMSGRECATED_MS(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": G(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 660 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 718 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 720 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3735 | if (IsNearZero(length)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3802 | if (IsNearZero(length)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1427 | if (bond1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": OB_DE 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": P 37 | #define OB_RECATDEPRECATED [[deprecatED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": ed]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 452 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 443 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 355 | rotor->SetDelta(delta); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 34 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 5 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 51 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 589 | gd->GetOriginVector(origin); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #12 - "compile-honggfuzz-address-x86_64": 310 | else if (vs[0][0] == '2') Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 9 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 911 | switch(pRD->ReactionType) Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 990 | switch(pRD->ReactionType) Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #12 - "compile-honggfuzz-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~ ^~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | gd->GetOriginVector(origin); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 158 | switch (chirality) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #12 - "compile-honggfuzz-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #12 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #12 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #12 - "compile-honggfuzz-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #12 - "compile-honggfuzz-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED6 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1523 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/charges/fromfile.cpp:114:30: warning: object backing the pointer 'name' will be destroyed at the end of the full-expression [-Wdangling-assignment-gsl] Step #12 - "compile-honggfuzz-address-x86_64": 114 | char *f = name = (char*)res->GetAtomID( a ).c_str(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #12 - "compile-honggfuzz-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~~~~~ ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #12 - "compile-honggfuzz-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 9 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 4 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #12 - "compile-honggfuzz-address-x86_64": [ 75%] Built target openbabel Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:111:12: warning: null passed to a callee that requires a non-null argument [-Wnonnull] Step #12 - "compile-honggfuzz-address-x86_64": 111 | return nullptr; Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 255 | // / \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 270 | // / \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:/src/openbabel/test/rotortest.cpp:96:13:285:16:  warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]warning:  Step #12 - "compile-honggfuzz-address-x86_64": backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 285 | // \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 287 | // \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPREC/src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": A 310 | // \ T  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": ED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 432 | // \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 102 | switch (units.at(i).type) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 140 | /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 132 | switch (units.at(i).t OB_ASSERT(IsNear(RAD_TOy_pDeEG) *{ r Step #12 - "compile-honggfuzz-address-x86_64": oto r| .C ^~~~~~~~~~~~~~~~a Step #12 - "compile-honggfuzz-address-x86_64": lcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Linking CXX executable ../bin/obabel Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 7 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Built target fuzz_obconversion_smiles Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Built target fuzz_obconversion_sdf Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Built target roundtrip Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Built target obabel Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Built target fuzz_convert Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 190 | x = m2.Get( i, j ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 17 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 24 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #12 - "compile-honggfuzz-address-x86_64": [100%] Built target test_runner Step #12 - "compile-honggfuzz-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/honggfuzz-address-x86_64/ Finished Step #12 - "compile-honggfuzz-address-x86_64" Starting Step #13 - "build-check-honggfuzz-address-x86_64" Step #13 - "build-check-honggfuzz-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #13 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp8x4noofj/fuzz_obconversion_sdf Step #13 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp8x4noofj/fuzz_obconversion_smiles Step #13 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp8x4noofj/fuzz_convert Finished Step #13 - "build-check-honggfuzz-address-x86_64" Starting Step #14 Step #14: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #14 Starting Step #15 Step #15: Already have image: gcr.io/oss-fuzz/openbabel Step #15: adding: fuzz_convert (deflated 65%) Step #15: adding: fuzz_obconversion_sdf (deflated 65%) Step #15: adding: fuzz_obconversion_smiles (deflated 65%) Step #15: adding: honggfuzz (deflated 66%) Step #15: adding: llvm-symbolizer (deflated 65%) Finished Step #15 Starting Step #16 Step #16: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #16: % Total % Received % Xferd Average Speed Time Time Time Current Step #16: Dload Upload Total Spent Left Speed Step #16: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 892 --:--:-- --:--:-- --:--:-- 893 Finished Step #16 Starting Step #17 Step #17: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #17: % Total % Received % Xferd Average Speed Time Time Time Current Step #17: Dload Upload Total Spent Left Speed Step #17: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 40.1M 0 0 100 40.1M 0 77.0M --:--:-- --:--:-- --:--:-- 77.0M 100 40.1M 0 0 100 40.1M 0 77.0M --:--:-- --:--:-- --:--:-- 77.0M Finished Step #17 Starting Step #18 Step #18: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #18: % Total % Received % Xferd Average Speed Time Time Time Current Step #18: Dload Upload Total Spent Left Speed Step #18: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 248 --:--:-- --:--:-- --:--:-- 248 Finished Step #18 Starting Step #19 Step #19: Already have image (with digest): gcr.io/cloud-builders/curl Step #19: % Total % Received % Xferd Average Speed Time Time Time Current Step #19: Dload Upload Total Spent Left Speed Step #19: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 186 --:--:-- --:--:-- --:--:-- 187 Finished Step #19 Starting Step #20 Step #20: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #20 Starting Step #21 - "compile-libfuzzer-address-x86_64" Step #21 - "compile-libfuzzer-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": vm.mmap_rnd_bits = 28 Step #21 - "compile-libfuzzer-address-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": CC=clang Step #21 - "compile-libfuzzer-address-x86_64": CXX=clang++ Step #21 - "compile-libfuzzer-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link Step #21 - "compile-libfuzzer-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link -stdlib=libc++ Step #21 - "compile-libfuzzer-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": + export 'CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link -stdlib=libc++ -std=c++17' Step #21 - "compile-libfuzzer-address-x86_64": + CXXFLAGS='-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link -stdlib=libc++ -std=c++17' Step #21 - "compile-libfuzzer-address-x86_64": + sed -i 's/CMAKE_CXX_STANDARD 11/CMAKE_CXX_STANDARD 17/g' CMakeLists.txt Step #21 - "compile-libfuzzer-address-x86_64": + sed -i 's/std::random/\/\/std::random/g' test/addhtest.cpp test/aliastest.cpp test/aligntest.cpp test/aromatest.cpp test/atom.cpp test/automorphismtest.cpp test/bond.cpp test/buildertest.cpp test/canonconsistenttest.cpp test/canonfragmenttest.cpp test/canonstabletest.cpp test/cansmi.cpp test/carspacegrouptest.cpp test/charge_gasteiger.cpp test/charge_mmff94.cpp test/cifspacegrouptest.cpp test/cistranstest.cpp test/cmlreadfile.cpp test/conversion.cpp test/conversiontest.cpp test/datatest.cpp test/ffgaff.cpp test/ffghemical.cpp test/ffmmff94.cpp test/ffuff.cpp test/formalcharge.cpp test/format.cpp test/formula.cpp test/graphsymtest.cpp test/gziptest.cpp test/implicitHtest.cpp test/inchiwrite.cpp test/internalcoord.cpp test/invalidsmarts.cpp test/invalidsmiles.cpp test/isomorphismtest.cpp test/iterators.cpp test/logp_psa.cpp test/lssrtest.cpp test/maereadertest.cpp test/math.cpp test/mmff94validate.cpp test/mol.cpp test/multicmltest.cpp test/obmolbenchmark.cpp test/obtest.cpp test/pdbreadfile.cpp test/periodictest.cpp test/phmodel.cpp test/regressionstest.cpp test/residue.cpp test/ringtest.cpp test/rotortest.cpp test/roundtrip.cpp test/shuffletest.cpp test/smartsparse.cpp test/smartstest.cpp test/smilesmatch.cpp test/smilestest.cpp test/smileytest.cpp test/spectrophoretest.cpp test/squareplanartest.cpp test/stereoperceptiontest.cpp test/stereotest.cpp test/strip.cpp test/tautomertest.cpp test/tetrahedraltest.cpp test/tetranonplanartest.cpp test/tetraplanartest.cpp test/uniqueidtest.cpp test/unitcell.cpp test/zipstream.cpp Step #21 - "compile-libfuzzer-address-x86_64": + mkdir build Step #21 - "compile-libfuzzer-address-x86_64": + cd build Step #21 - "compile-libfuzzer-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #21 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #21 - "compile-libfuzzer-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #21 - "compile-libfuzzer-address-x86_64": CMake. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #21 - "compile-libfuzzer-address-x86_64": CMake that the project does not need compatibility with older versions. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- The C compiler identification is Clang 22.0.0 Step #21 - "compile-libfuzzer-address-x86_64": -- The CXX compiler identification is Clang 22.0.0 Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compiler ABI info Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compiler ABI info - done Step #21 - "compile-libfuzzer-address-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compile features Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compile features - done Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compiler ABI info Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compiler ABI info - done Step #21 - "compile-libfuzzer-address-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compile features Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compile features - done Step #21 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #21 - "compile-libfuzzer-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #21 - "compile-libfuzzer-address-x86_64": of CMake. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #21 - "compile-libfuzzer-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #21 - "compile-libfuzzer-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #21 - "compile-libfuzzer-address-x86_64": behavior and not rely on setting a policy to OLD. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Using included inchi library. Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #21 - "compile-libfuzzer-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #21 - "compile-libfuzzer-address-x86_64": libxml2 not found - disabling CML support! Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for conio.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for conio.h - not found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/time.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/time.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for time.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for time.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strings.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strings.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for regex.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for regex.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for C++ include sstream Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for C++ include sstream - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for rint Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for rint - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for snprintf Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for snprintf - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sranddev Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sranddev - not found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strcasecmp Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strcasecmp - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strncasecmp Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strncasecmp - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for xdrstdio_create Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for xdrstdio_create - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for dlopen in dl Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for dlopen in dl - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/types.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/types.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stdint.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stdint.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stddef.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stddef.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Check size of clock_t Step #21 - "compile-libfuzzer-address-x86_64": -- Check size of clock_t - done Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #21 - "compile-libfuzzer-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #21 - "compile-libfuzzer-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #21 - "compile-libfuzzer-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #21 - "compile-libfuzzer-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #21 - "compile-libfuzzer-address-x86_64": -- Found Threads: TRUE Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for getopt Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for getopt - found Step #21 - "compile-libfuzzer-address-x86_64": -- GUI will not be built Step #21 - "compile-libfuzzer-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #21 - "compile-libfuzzer-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #21 - "compile-libfuzzer-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #21 - "compile-libfuzzer-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": Call Stack (most recent call first): Step #21 - "compile-libfuzzer-address-x86_64": test/CMakeLists.txt:233 (include) Step #21 - "compile-libfuzzer-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.11.13") Step #21 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #21 - "compile-libfuzzer-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #21 - "compile-libfuzzer-address-x86_64": CMake. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #21 - "compile-libfuzzer-address-x86_64": CMake that the project does not need compatibility with older versions. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Configuring done (6.0s) Step #21 - "compile-libfuzzer-address-x86_64": -- Generating done (0.1s) Step #21 - "compile-libfuzzer-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #21 - "compile-libfuzzer-address-x86_64": ++ nproc Step #21 - "compile-libfuzzer-address-x86_64": + make -j 32 Step #21 - "compile-libfuzzer-address-x86_64": [ 0%] Generating atomtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 0%] Generating bondtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating resdata.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating phmodeldata.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating torlib.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating types.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating atomizationenergies.h Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Generating spacegroups.h Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Generating ringtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Built target data_headers Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 82 | _ival=nullptr; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #21 - "compile-libfuzzer-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[depre/src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 826 | ca t if ((*i)->IsInRing(GetIdx())ed]] Step #21 - "compile-libfuzzer-address-x86_64": && | st ^a Step #21 - "compile-libfuzzer-address-x86_64": tic_cast<int>((*i)->PathSize()) == size) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) {/src/openbabel/src/forcefield.cpp Step #21 - "compile-libfuzzer-address-x86_64": : | 482:31 ^: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197warning: :3'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations]: Step #21 - "compile-libfuzzer-address-x86_64":  482 | rab = OBFnote: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": orc eFi197el | d:: Ve cOtBo_rDLEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: engthDerivative(da, db);expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": |  Step #21 - "compile-libfuzzer-address-x86_64": ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:371523 | : 5 : note:  'VectorLengthDerivative' has been explicitly marked deprecated here # Step #21 - "compile-libfuzzer-address-x86_64": def ine 1523O | B _ D E OPBR_ECADTEEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": D [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 1539 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 1572 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 310 | if (bond2 == VZero || /src/openbabel/src/forcefield.cpp:1622:8: v1 == VZero) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATEwarning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": D_MS 1622 | G("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATrEDl.SetFi_MSG(msg) [[deprecatxedAtoms(fixed); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": :5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_/src/openbabel/src/builder.cpp:359:21: MSwarning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": G(359msg) [[de | precated(msg ) ] ]  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 361 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1635 | combinations *= rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 430 | if/src/openbabel/src/forcefield.cpp:1685 :43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": (b 1685 | for (unsignedond1 ==  VintZ j = 0; j < rotor->GetResero) Step #21 - "compile-libfuzzer-address-x86_64": olution().size(); j++|  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": :273:5 449 | : note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vec tor3::IsApp rox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_M/src/openbabel/build/include/openbabel/babelconfig.hSG(:msg) [[deprecated(msg)]]38:38:  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) /src/openbabel/src/forcefield.cpp[[:d1712e:p43r:e catewarning: d(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1712 | for (u|  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": nsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("S432ee | G e t T o r s i o n V aleulesse() "i)f Step #21 - "compile-libfuzzer-address-x86_64": (| bo ^n Step #21 - "compile-libfuzzer-address-x86_64": d2 =/src/openbabel/build/include/openbabel/babelconfig.h=: 38V:Z38e:r o) Step #21 - "compile-libfuzzer-address-x86_64": note: | expanded from macro 'OB_DEPRECATED_MSG' ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:38273 | : 5 : #dnote: ef'operator==' has been explicitly marked deprecated herein Step #21 - "compile-libfuzzer-address-x86_64": e OB_DE273P | R E CA T EODB__MDSEGP(RmEsCgA)T E[D[_dMeSpGr(ec"aUtseed (vmsegc)t]o]r3 Step #21 - "compile-libfuzzer-address-x86_64": : :| IsAp ^p Step #21 - "compile-libfuzzer-address-x86_64": rox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++)/src/openbabel/src/builder.cpp {:434 Step #21 - "compile-libfuzzer-address-x86_64": : 28| : ^ Step #21 - "compile-libfuzzer-address-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]/src/openbabel/include/openbabel/rotor.h: Step #21 - "compile-libfuzzer-address-x86_64": 449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 434 | 449 | e l s eO B_iDfEP R(EbCoAnTdE3D _=M=S GV(Ze"rSoe)e Step #21 - "compile-libfuzzer-address-x86_64": G e| tT ^o Step #21 - "compile-libfuzzer-address-x86_64": rsio/src/openbabel/include/openbabel/math/vector3.hn:Va273l:u5e: s(note: )"'operator==' has been explicitly marked deprecated here) Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": | 273 ^ | Step #21 - "compile-libfuzzer-address-x86_64":   O/src/openbabel/build/include/openbabel/babelconfig.hB:_38D:E38P:R ECAnote: TEexpanded from macro 'OB_DEPRECATED_MSG'D_ Step #21 - "compile-libfuzzer-address-x86_64": M SG("Us38e | v e c t#odre3f:ine OB_D:EIPsRAEpCpArToExD(_)M SiG(nmsstge)a d[.["de)pr Step #21 - "compile-libfuzzer-address-x86_64": e c| at ^e Step #21 - "compile-libfuzzer-address-x86_64": d(ms/src/openbabel/build/include/openbabel/babelconfig.hg:)38]:]38: Step #21 - "compile-libfuzzer-address-x86_64":  | note: ^ Step #21 - "compile-libfuzzer-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64":  38 | #define OB_DEPREC/src/openbabel/src/forcefield.cppA:T1720E:D13_:M SG(warning: ms'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]g) Step #21 - "compile-libfuzzer-address-x86_64": [[deprecat1720e | d ( m s g ) ] ]  Step #21 - "compile-libfuzzer-address-x86_64": i f|  ^( Step #21 - "compile-libfuzzer-address-x86_64": IsNear(worstE, bestE, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp38 | : 450 : 23 :# defwarning: ine'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] O Step #21 - "compile-libfuzzer-address-x86_64": B _DEPRECATED_MSG450( | m s g ) [ [ d e p r e caitfe (db(omnsdg1) ]=]= Step #21 - "compile-libfuzzer-address-x86_64": V Z| er ^o Step #21 - "compile-libfuzzer-address-x86_64": ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1761 | /src/openbabel/src/builder.cpp : 452 : 28 : forwarning:  ('operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]u Step #21 - "compile-libfuzzer-address-x86_64": n signed int j452 | =  0  ; j < r oteolrs-e>G etResiolf (buotnido2n (=)=. VZersoi)ze Step #21 - "compile-libfuzzer-address-x86_64": ( )| ; ^j Step #21 - "compile-libfuzzer-address-x86_64": ++) {/src/openbabel/include/openbabel/math/vector3.h: Step #21 - "compile-libfuzzer-address-x86_64": 273 :| 5: ^ Step #21 - "compile-libfuzzer-address-x86_64": note: 'operator==' has been explicitly marked deprecated here/src/openbabel/include/openbabel/rotor.h: Step #21 - "compile-libfuzzer-address-x86_64": 449 :5: 273note: |  'GetResolution' has been explicitly marked deprecated here  Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED449_ | M S G ( O"BU_sDeE PvReEcCtAoTrE3:D:_IMsSAGp(pr"oSxe(e) GienstetaTdo.r"si)on Step #21 - "compile-libfuzzer-address-x86_64": V a| lu ^e Step #21 - "compile-libfuzzer-address-x86_64": s()"/src/openbabel/build/include/openbabel/babelconfig.h):38 Step #21 - "compile-libfuzzer-address-x86_64": : 38| : ^ Step #21 - "compile-libfuzzer-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG'/src/openbabel/build/include/openbabel/babelconfig.h Step #21 - "compile-libfuzzer-address-x86_64": : 38:38: 38 | note:  expanded from macro 'OB_DEPRECATED_MSG'  Step #21 - "compile-libfuzzer-address-x86_64": #define OB_DEPRECATED_MSG38( | m s g ) #[d[edfeipnree cOaBt_eDdE(PmsRgE)C]A]TE Step #21 - "compile-libfuzzer-address-x86_64": D _| MS ^G Step #21 - "compile-libfuzzer-address-x86_64": (msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 454 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 469 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 471 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 473 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 494 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": | 2788 | if (atom->GetVector() != VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2805 | if (!hasY && !IsNearZero(atom->y())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 496 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 498 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 514 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 516 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 518 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 520 | else if (bond4 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPR/src/openbabel/src/forcefield.cppE:C2420A:T9E:D _MSwarning: G(m'IsNearZero' is deprecated [-Wdeprecated-declarations]sg Step #21 - "compile-libfuzzer-address-x86_64": ) [[de p2420r | e c a t edi(fms g()I]s]Ne Step #21 - "compile-libfuzzer-address-x86_64": a r| Ze ^r Step #21 - "compile-libfuzzer-address-x86_64": o(scale)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 533 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_/src/openbabel/src/forcefield.cppM:S2539G:(11m:s g) warning: [[d'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]ep Step #21 - "compile-libfuzzer-address-x86_64": recated(msg)]] 2539 Step #21 - "compile-libfuzzer-address-x86_64": | |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38/src/openbabel/src/builder.cpp | : 535 : 28 :# defwarning: ine'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] O Step #21 - "compile-libfuzzer-address-x86_64": B_DEPRECATED _535M | S G ( m s g ) [ [ d e preelcsaete d(imfsg )(]b]on Step #21 - "compile-libfuzzer-address-x86_64": d 2| = ^= Step #21 - "compile-libfuzzer-address-x86_64": VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 537 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 539 | else if (bond4 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1/src/openbabel/src/mol.cpp:2826:.230:e -7warning: ))'IsNearZero' is deprecated [-Wdeprecated-declarations] { Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  /src/openbabel/include/openbabel/obutil.h2826: | if (!hasX && !IsNearZero(atom->x())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 564 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 566 | 189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": e 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": lse if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 568 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3252: 570 | e24: lsewarning:  'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations]if Step #21 - "compile-libfuzzer-address-x86_64":  3252 | (bon d4 == VZero)if  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273((*:rin5: git)->PathSiznote: e() =='operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEP 5)RECATED Step #21 - "compile-libfuzzer-address-x86_64": | _MSG( ^ Step #21 - "compile-libfuzzer-address-x86_64": "/src/openbabel/include/openbabel/ring.h:65:5:Use vect note: or3::IsA'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": p/src/openbabel/src/forcefield.cppp:r2725:ox() 13i:n stewarning: ad.'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]"65 | Step #21 - "compile-libfuzzer-address-x86_64": ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ 2725 | O Step #21 - "compile-libfuzzer-address-x86_64": B_DEPRECATE/src/openbabel/build/include/openbabel/babelconfig.h:38:38: D_MSG  note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECA("UsTED_MSG(msg) [[deprece Size() instead")ated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38/src/openbabel/src/builder.cpp:572:28: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": :38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 189 | O B38_ | DEPRECATED_MSG("Use IsAppr ox() insteawarning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]d") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECAT ED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^572 | Step #21 - "compile-libfuzzer-address-x86_64": #defineelse if (bond5 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("UOB_DEse vectorPRECATED_MSG3::(msg) [[dIsAeprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": pprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": | /src/openbabel/src/mol.cpp:3274:29: ^  Step #21 - "compile-libfuzzer-address-x86_64": warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64":  3274 | else if ((*ringit)->PathSize() == 6) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 660 | if 65 | OB_DEPRECAT (bEond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": D/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": _M 273SG("Use Size() instead" | OB_DEPRECATE)D_MSG("Use Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #def vector3::IsApine OB_DEPRECATED_MSG(msg) [[deprecpated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": | r ^ Step #21 - "compile-libfuzzer-address-x86_64": ox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 718 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 720 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3735 | if (IsNearZero(length)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3802 | if (IsNearZero(length)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl/src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1427 | - if (bond1 == VZero) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPREC AMT_EPDI_)M)S)G ({" Step #21 - "compile-libfuzzer-address-x86_64": U s| e ^v Step #21 - "compile-libfuzzer-address-x86_64": ecto/src/openbabel/include/openbabel/obutil.hr:3197:::3I:s Appnote: ro'IsNearZero' has been explicitly marked deprecated herex( Step #21 - "compile-libfuzzer-address-x86_64": ) instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h: 38197: | 38 : OB_note: DEexpanded from macro 'OB_DEPRECATED_MSG'PR Step #21 - "compile-libfuzzer-address-x86_64": ECATED Step #21 - "compile-libfuzzer-address-x86_64": 38| |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  #d/src/openbabel/build/include/openbabel/babelconfig.he:f37i:n29e: OB_note: DEexpanded from macro 'OB_DEPRECATED'PR Step #21 - "compile-libfuzzer-address-x86_64": ECATED_MSG(m s37g | ) [ [ d#edperfeicnaet eOdB(_mDsEgP)R]E]CA Step #21 - "compile-libfuzzer-address-x86_64": T E| D ^[ Step #21 - "compile-libfuzzer-address-x86_64": [deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 452 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 443 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 355 | rotor->SetDelta(delta); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 34 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 5 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 51 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 589 | gd->GetOriginVector(origin); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #21 - "compile-libfuzzer-address-x86_64": 310 | else if (vs[0][0] == '2') Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 9 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 911 | switch(pRD->ReactionType) Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 990 | switch(pRD->ReactionType) Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #21 - "compile-libfuzzer-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~ ^~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | gd->GetOriginVector(origin); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 158 | switch (chirality) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #21 - "compile-libfuzzer-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #21 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #21 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #21 - "compile-libfuzzer-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #21 - "compile-libfuzzer-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 1523 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/charges/fromfile.cpp:114:30: warning: object backing the pointer 'name' will be destroyed at the end of the full-expression [-Wdangling-assignment-gsl] Step #21 - "compile-libfuzzer-address-x86_64": 114 | char *f = name = (char*)res->GetAtomID( a ).c_str(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #21 - "compile-libfuzzer-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~~~~~ ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #21 - "compile-libfuzzer-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 9 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 4 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #21 - "compile-libfuzzer-address-x86_64": [ 75%] Built target openbabel Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:111:12: warning: null passed to a callee that requires a non-null argument [-Wnonnull] Step #21 - "compile-libfuzzer-address-x86_64": 111 | return nullptr; Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 255 | // / \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 270 | // / \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 285 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 287 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 310 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 432 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 102 | switch (units.at(i).type) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 132 | switch (units.at(i).type) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Linking CXX executable ../bin/obabel Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #21 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 7 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Built target fuzz_obconversion_sdf Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Built target fuzz_obconversion_smiles Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Built target roundtrip Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Built target obabel Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Built target fuzz_convert Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 190 | x = m2.Get( i, j ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": 17 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 24 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #21 - "compile-libfuzzer-address-x86_64": [100%] Built target test_runner Step #21 - "compile-libfuzzer-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-address-x86_64/ Finished Step #21 - "compile-libfuzzer-address-x86_64" Starting Step #22 - "build-check-libfuzzer-address-x86_64" Step #22 - "build-check-libfuzzer-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #22 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp8d0zl62j/fuzz_obconversion_sdf Step #22 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp8d0zl62j/fuzz_obconversion_smiles Step #22 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp8d0zl62j/fuzz_convert Finished Step #22 - "build-check-libfuzzer-address-x86_64" Starting Step #23 Step #23: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #23 Starting Step #24 Step #24: Already have image: gcr.io/oss-fuzz/openbabel Step #24: adding: fuzz_convert (deflated 67%) Step #24: adding: fuzz_obconversion_sdf (deflated 67%) Step #24: adding: fuzz_obconversion_smiles (deflated 67%) Step #24: adding: llvm-symbolizer (deflated 65%) Finished Step #24 Starting Step #25 Step #25: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #25: % Total % Received % Xferd Average Speed Time Time Time Current Step #25: Dload Upload Total Spent Left Speed Step #25: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 849 --:--:-- --:--:-- --:--:-- 851 Finished Step #25 Starting Step #26 Step #26: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #26: % Total % Received % Xferd Average Speed Time Time Time Current Step #26: Dload Upload Total Spent Left Speed Step #26: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 42.8M 0 0 100 42.8M 0 68.5M --:--:-- --:--:-- --:--:-- 68.4M 100 42.8M 0 0 100 42.8M 0 68.5M --:--:-- --:--:-- --:--:-- 68.4M Finished Step #26 Starting Step #27 Step #27: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #27: % Total % Received % Xferd Average Speed Time Time Time Current Step #27: Dload Upload Total Spent Left Speed Step #27: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 244 --:--:-- --:--:-- --:--:-- 244 Finished Step #27 Starting Step #28 Step #28: Already have image (with digest): gcr.io/cloud-builders/curl Step #28: % Total % Received % Xferd Average Speed Time Time Time Current Step #28: Dload Upload Total Spent Left Speed Step #28: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 170 --:--:-- --:--:-- --:--:-- 171 Finished Step #28 Starting Step #29 Step #29: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #29 Starting Step #30 - "compile-libfuzzer-undefined-x86_64" Step #30 - "compile-libfuzzer-undefined-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": vm.mmap_rnd_bits = 28 Step #30 - "compile-libfuzzer-undefined-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": CC=clang Step #30 - "compile-libfuzzer-undefined-x86_64": CXX=clang++ Step #30 - "compile-libfuzzer-undefined-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -fno-sanitize=function Step #30 - "compile-libfuzzer-undefined-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -stdlib=libc++ Step #30 - "compile-libfuzzer-undefined-x86_64": RUSTFLAGS=--cfg fuzzing -Cdebuginfo=1 -Cforce-frame-pointers Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": + export 'CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -stdlib=libc++ -std=c++17' Step #30 - "compile-libfuzzer-undefined-x86_64": + CXXFLAGS='-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -stdlib=libc++ -std=c++17' Step #30 - "compile-libfuzzer-undefined-x86_64": + sed -i 's/CMAKE_CXX_STANDARD 11/CMAKE_CXX_STANDARD 17/g' CMakeLists.txt Step #30 - "compile-libfuzzer-undefined-x86_64": + sed -i 's/std::random/\/\/std::random/g' test/addhtest.cpp test/aliastest.cpp test/aligntest.cpp test/aromatest.cpp test/atom.cpp test/automorphismtest.cpp test/bond.cpp test/buildertest.cpp test/canonconsistenttest.cpp test/canonfragmenttest.cpp test/canonstabletest.cpp test/cansmi.cpp test/carspacegrouptest.cpp test/charge_gasteiger.cpp test/charge_mmff94.cpp test/cifspacegrouptest.cpp test/cistranstest.cpp test/cmlreadfile.cpp test/conversion.cpp test/conversiontest.cpp test/datatest.cpp test/ffgaff.cpp test/ffghemical.cpp test/ffmmff94.cpp test/ffuff.cpp test/formalcharge.cpp test/format.cpp test/formula.cpp test/graphsymtest.cpp test/gziptest.cpp test/implicitHtest.cpp test/inchiwrite.cpp test/internalcoord.cpp test/invalidsmarts.cpp test/invalidsmiles.cpp test/isomorphismtest.cpp test/iterators.cpp test/logp_psa.cpp test/lssrtest.cpp test/maereadertest.cpp test/math.cpp test/mmff94validate.cpp test/mol.cpp test/multicmltest.cpp test/obmolbenchmark.cpp test/obtest.cpp test/pdbreadfile.cpp test/periodictest.cpp test/phmodel.cpp test/regressionstest.cpp test/residue.cpp test/ringtest.cpp test/rotortest.cpp test/roundtrip.cpp test/shuffletest.cpp test/smartsparse.cpp test/smartstest.cpp test/smilesmatch.cpp test/smilestest.cpp test/smileytest.cpp test/spectrophoretest.cpp test/squareplanartest.cpp test/stereoperceptiontest.cpp test/stereotest.cpp test/strip.cpp test/tautomertest.cpp test/tetrahedraltest.cpp test/tetranonplanartest.cpp test/tetraplanartest.cpp test/uniqueidtest.cpp test/unitcell.cpp test/zipstream.cpp Step #30 - "compile-libfuzzer-undefined-x86_64": + mkdir build Step #30 - "compile-libfuzzer-undefined-x86_64": + cd build Step #30 - "compile-libfuzzer-undefined-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #30 - "compile-libfuzzer-undefined-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #30 - "compile-libfuzzer-undefined-x86_64": CMake. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #30 - "compile-libfuzzer-undefined-x86_64": CMake that the project does not need compatibility with older versions. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- The C compiler identification is Clang 22.0.0 Step #30 - "compile-libfuzzer-undefined-x86_64": -- The CXX compiler identification is Clang 22.0.0 Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compiler ABI info Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compiler ABI info - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compile features Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compile features - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compiler ABI info Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compiler ABI info - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compile features Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compile features - done Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #30 - "compile-libfuzzer-undefined-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #30 - "compile-libfuzzer-undefined-x86_64": of CMake. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #30 - "compile-libfuzzer-undefined-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #30 - "compile-libfuzzer-undefined-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #30 - "compile-libfuzzer-undefined-x86_64": behavior and not rely on setting a policy to OLD. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Using included inchi library. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #30 - "compile-libfuzzer-undefined-x86_64": libxml2 not found - disabling CML support! Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for conio.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for conio.h - not found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/time.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/time.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for time.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for time.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strings.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strings.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for regex.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for regex.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for C++ include sstream Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for C++ include sstream - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for rint Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for rint - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for snprintf Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for snprintf - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sranddev Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sranddev - not found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strcasecmp Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strcasecmp - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strncasecmp Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strncasecmp - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for xdrstdio_create Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for xdrstdio_create - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for dlopen in dl Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for dlopen in dl - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/types.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/types.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stdint.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stdint.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stddef.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stddef.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check size of clock_t Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check size of clock_t - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #30 - "compile-libfuzzer-undefined-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found Threads: TRUE Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for getopt Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for getopt - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- GUI will not be built Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #30 - "compile-libfuzzer-undefined-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #30 - "compile-libfuzzer-undefined-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #30 - "compile-libfuzzer-undefined-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": Call Stack (most recent call first): Step #30 - "compile-libfuzzer-undefined-x86_64": test/CMakeLists.txt:233 (include) Step #30 - "compile-libfuzzer-undefined-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.11.13") Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #30 - "compile-libfuzzer-undefined-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #30 - "compile-libfuzzer-undefined-x86_64": CMake. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #30 - "compile-libfuzzer-undefined-x86_64": CMake that the project does not need compatibility with older versions. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Configuring done (4.6s) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Generating done (0.1s) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Build files have been written to: /src/openbabel/build Step #30 - "compile-libfuzzer-undefined-x86_64": ++ nproc Step #30 - "compile-libfuzzer-undefined-x86_64": + make -j 32 Step #30 - "compile-libfuzzer-undefined-x86_64": [ 0%] Generating atomtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 0%] Generating bondtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating phmodeldata.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating resdata.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating torlib.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating types.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating atomizationenergies.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Generating spacegroups.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Generating ringtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Built target data_headers Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 82 | _ival=nullptr; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 297 | if (!IsNearZero(val[2])) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #30 - "compile-libfuzzer-undefined-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast<int>((*i)->PathSize()) == size) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated/src/openbabel/src/atom.cpp Step #30 - "compile-libfuzzer-undefined-x86_64": | :1143 ^:9 Step #30 - "compile-libfuzzer-undefined-x86_64": : warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations]/src/openbabel/build/include/openbabel/babelconfig.h Step #30 - "compile-libfuzzer-undefined-x86_64": : 371143: | 29 :  if (IsNearZero(v1.lennote: gth(), 1.0e-3) Step #30 - "compile-libfuzzer-undefined-x86_64": expanded from macro 'OB_DEPRECATED' |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:11837 | : #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1523 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1539 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1572 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp: 310:19:|  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64":  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector/src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3::Is Ap1213 | rprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": o |  ^t Step #30 - "compile-libfuzzer-undefined-x86_64": orKe/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG'ys.AddRotor(rotor->GetResolution().s Step #30 - "compile-libfuzzer-undefined-x86_64": iz 38 | #define OB_DEPRECATED_MSG(msg) [[deprecaeted(msg)]()]); Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": | |  ^ ^ Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG'/src/openbabel/src/builder.cpp:310:34 Step #30 - "compile-libfuzzer-undefined-x86_64": : warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #def ine OB310_ | DEPiRfECATED_MSG(msg) [[deprec (bond2 == VZero || atevd(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": | 1 == ^ VZe Step #30 - "compile-libfuzzer-undefined-x86_64": r/src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": o) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MS1301 | rlG.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": (/src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": " 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": U/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": se 38 | #define OB_DEPRECATED_MSG(msg) [v[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 359 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 361 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 430 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 432 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 434 | else if (bond3 == VZer/src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1444 | rl.SetFixAtoms(fo)ixed Step #30 - "compile-libfuzzer-undefined-x86_64": ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 633|  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: /src/openbabel/include/openbabel/math/vector3.hexpanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": :38 | 273 #def:5ine OB_DE:PRECATED_ MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": note: |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1457:/src/openbabel/build/include/openbabel/babelconfig.h:38:38: 32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #d efine 1457O | B[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": _DEP R E CA T E cDo_MmSbGi(nmasg) t[ions *= ro[dteopr-r>eGectaRteeds(omlsugt)ion](]). Step #30 - "compile-libfuzzer-undefined-x86_64": siz e| () ^; Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[depr/src/openbabel/src/builder.cpp:450:ecated(m23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": sg 450 | )]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3/src/openbabel/src/forcefield.cpp:1482:52: ::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38:warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": 1482 | rot 38 | #define OB_DEPRECATED_MSG(msg) [[deprecaorted(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": Key[i] = generator.NextInt() % rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:452:28:  449 | warning:  OB_DEPRECATED_MS'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 452 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": G("Se/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": e 273GetTorsio | OB_DEPRECATED_MSG("Use vector3::IsApprox() instnValues(ead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": )") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(m/src/openbabel/src/builder.cpp:454:28: sg) [[deprecatewarning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 454 | d(msg)]] else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  Step #30 - "compile-libfuzzer-undefined-x86_64": ^ Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1622 | rl.SetFixA/src/openbabel/src/builder.cpp:469:23: warning: to'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]ms(f Step #30 - "compile-libfuzzer-undefined-x86_64": i xed); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 469 | /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECAT if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPREED_MSG("CSee SetFixedBoATED_nMdSsG(()""Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 471 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2788 | if (atom->GetVector() != VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp :38473 | : 28 : #dwarning: efi'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]ne Step #30 - "compile-libfuzzer-undefined-x86_64": OB_ D473E | P R E C A T E D _MeSlGs(ems g)i f[[ d(ebpornedc3a t=e=d (VmZsg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 |  /src/openbabel/src/mol.cpp : 2803#:d23e:f inewarning: OB'IsNearZero' is deprecated [-Wdeprecated-declarations]_D Step #30 - "compile-libfuzzer-undefined-x86_64": EPREC A2803T | E D _ M S G ( m sgi)f [ [(d!ehparseXc a&t&e d!(ImssNge)a]r] Step #30 - "compile-libfuzzer-undefined-x86_64": | Ze ^r Step #30 - "compile-libfuzzer-undefined-x86_64": o(atom->x())) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2805 | if (!hasY && !IsNearZero(atom->y())) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 1635 | combinations *= rotor->GetRes o37l | u t i o n#(d)e.fsiizne Oe(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": B 449 | OB_DEPRECATED_MSG("_DEPSee GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #definReE COABT_DEPRECATED_MSG(EDm sg)[[edreop)recated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  [[deprecate/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": d(msg/src/openbabel/src/mol.cpp:2826:23: )]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2826 | if (!h a273s | X OB&&_ DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38!:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | I #define sOB_DEPRENearCZATED_MSG(msg) [[deerprecoa(taetom->x()d()) Step #30 - "compile-libfuzzer-undefined-x86_64": m s| g) ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ]] Step #30 - "compile-libfuzzer-undefined-x86_64": | /src/openbabel/include/openbabel/obutil.h ^:197:3:  Step #30 - "compile-libfuzzer-undefined-x86_64": note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^/src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 1685'IsNearZero' is deprecated [-Wdeprecated-declarations] |  Step #30 - "compile-libfuzzer-undefined-x86_64": for2828 | (  u n s i g neidf (int! jh a=s Y 0&&; !jI s(GaettoRme-s>oyl(u)t)i)on Step #30 - "compile-libfuzzer-undefined-x86_64": ( )| .s ^i Step #30 - "compile-libfuzzer-undefined-x86_64": ze();/src/openbabel/include/openbabel/obutil.h :j197+:+3): { Step #30 - "compile-libfuzzer-undefined-x86_64": note: | 'IsNearZero' has been explicitly marked deprecated here ^ Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:197449 | : 5 :O B_Dnote: EP'GetResolution' has been explicitly marked deprecated hereRE Step #30 - "compile-libfuzzer-undefined-x86_64": C/src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": AT 494 | ED Step #30 - "compile-libfuzzer-undefined-x86_64": if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  449/src/openbabel/build/include/openbabel/babelconfig.h | : 37 :29: O note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": B_ D37 | EPR Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 496 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 498 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 514 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 516 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 518 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 520 | else if (bond4 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 533 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 535 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 537 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 539 | else if (bond4 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:/src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2420 | if (IsNearZero(scale)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3252 | if ((*ringit)->PathSize() == 5) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 564 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2657 | if (IsNear(e_n2, e_n1, /src/openbabel/src/builder.cpp:566:28: 1.0e-7)) { Step #30 - "compile-libfuzzer-undefined-x86_64": warning: | 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  566 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vec/src/openbabel/src/mol.cpp:3274:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": t 3274 | else if ((*ringit)->PathSi/src/openbabel/include/openbabel/obutil.hz:e() == 6) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 65 | OB_DEPRECAT:ED_MSG(3": Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: or3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 568 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 570 | else if (bond4 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 572 | else if (bond5 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 660 | note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 718 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vect/src/openbabel/src/forcefield.cppo:r3039:11:3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 |   warning: #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 720 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64":  273 | OB_DEPR/src/openbabel/include/openbabel/obutil.hE:CATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECAT[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": ED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3735 | if (IsNearZero(length)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3802 | if (IsNearZero(length)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1427 | if (bond1 == VZero) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 452 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 443 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 355 | rotor->SetDelta(delta); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 371 | if (!IsNearZero(pcharge)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 5 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 34 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 589 | gd->GetOriginVector(origin); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | else if (vs[0][0] == '2') Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 51 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated[ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": . Step #30 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 911 | switch(pRD->ReactionType) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 990 | switch(pRD->ReactionType) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 9 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #30 - "compile-libfuzzer-undefined-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~ ^~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | gd->GetOriginVector(origin); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 158 | switch (chirality) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #30 - "compile-libfuzzer-undefined-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #30 - "compile-libfuzzer-undefined-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #30 - "compile-libfuzzer-undefined-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1523 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/charges/fromfile.cpp:114:30: warning: object backing the pointer 'name' will be destroyed at the end of the full-expression [-Wdangling-assignment-gsl] Step #30 - "compile-libfuzzer-undefined-x86_64": 114 | char *f = name = (char*)res->GetAtomID( a ).c_str(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": 9 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #30 - "compile-libfuzzer-undefined-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~~~~~ ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #30 - "compile-libfuzzer-undefined-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 4 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #30 - "compile-libfuzzer-undefined-x86_64": [ 75%] Built target openbabel Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:111:12: warning: null passed to a callee that requires a non-null argument [-Wnonnull] Step #30 - "compile-libfuzzer-undefined-x86_64": 111 | return nullptr; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 255 | // / \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 270 | // / \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 285 | // \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 287 | // \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | 96 | O // B _A SS\ E  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": RT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 432 | // \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 102 | switch (units.at(i).type) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 132 | switch (units.at(i).type) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Linking CXX executable ../bin/obabel Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Built target fuzz_obconversion_smiles Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Built target fuzz_obconversion_sdf Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 7 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Built target roundtrip Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Built target obabel Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Built target fuzz_convert Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 190 | x = m2.Get( i, j ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 17 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 24 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #30 - "compile-libfuzzer-undefined-x86_64": [100%] Built target test_runner Step #30 - "compile-libfuzzer-undefined-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-undefined-x86_64/ Finished Step #30 - "compile-libfuzzer-undefined-x86_64" Starting Step #31 - "build-check-libfuzzer-undefined-x86_64" Step #31 - "build-check-libfuzzer-undefined-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #31 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpso6vr73x/fuzz_obconversion_sdf Step #31 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpso6vr73x/fuzz_obconversion_smiles Step #31 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpso6vr73x/fuzz_convert Finished Step #31 - "build-check-libfuzzer-undefined-x86_64" Starting Step #32 Step #32: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #32 Starting Step #33 Step #33: Already have image: gcr.io/oss-fuzz/openbabel Step #33: adding: fuzz_convert (deflated 71%) Step #33: adding: fuzz_obconversion_sdf (deflated 71%) Step #33: adding: fuzz_obconversion_smiles (deflated 71%) Step #33: adding: llvm-symbolizer (deflated 65%) Finished Step #33 Starting Step #34 Step #34: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #34: % Total % Received % Xferd Average Speed Time Time Time Current Step #34: Dload Upload Total Spent Left Speed Step #34: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 918 --:--:-- --:--:-- --:--:-- 914 Finished Step #34 Starting Step #35 Step #35: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #35: % Total % Received % Xferd Average Speed Time Time Time Current Step #35: Dload Upload Total Spent Left Speed Step #35: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 88 41.1M 0 0 88 36.2M 0 123M --:--:-- --:--:-- --:--:-- 123M 100 41.1M 0 0 100 41.1M 0 73.1M --:--:-- --:--:-- --:--:-- 73.0M Finished Step #35 Starting Step #36 Step #36: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #36: % Total % Received % Xferd Average Speed Time Time Time Current Step #36: Dload Upload Total Spent Left Speed Step #36: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 293 --:--:-- --:--:-- --:--:-- 292 100 60 0 0 100 60 0 237 --:--:-- --:--:-- --:--:-- 238 Finished Step #36 Starting Step #37 Step #37: Already have image (with digest): gcr.io/cloud-builders/curl Step #37: % Total % Received % Xferd Average Speed Time Time Time Current Step #37: Dload Upload Total Spent Left Speed Step #37: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 36 0 0 100 36 0 182 --:--:-- --:--:-- --:--:-- 182 Finished Step #37 Starting Step #38 Step #38: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #38 PUSH DONE