starting build "3e6c47ba-60ed-4bc7-b7ff-0e157005d803" FETCHSOURCE BUILD Starting Step #0 Step #0: Already have image (with digest): gcr.io/cloud-builders/git Step #0: Step #0: ***** NOTICE ***** Step #0: Step #0: Official `cloud-sdk` images, including multiple tagged versions across multiple Step #0: platforms, can be found at Step #0: https://github.com/GoogleCloudPlatform/cloud-sdk-docker and may be more suitable Step #0: for some use cases when interacting with Cloud Source Repositories. Step #0: Step #0: For additional information, please visit Step #0: https://github.com/GoogleCloudPlatform/cloud-builders/tree/master/git Step #0: Step #0: ***** END OF NOTICE ***** Step #0: Step #0: Cloning into 'oss-fuzz'... Finished Step #0 Starting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234" Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Already have image (with digest): gcr.io/cloud-builders/docker Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Sending build context to Docker daemon 7.168kB Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Step 1/5 : FROM gcr.io/oss-fuzz-base/base-builder Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": latest: Pulling from oss-fuzz-base/base-builder Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": b549f31133a9: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 7e783fa1d768: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": dccb20f57e48: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 2126ba32b6e6: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 120136251f1a: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": ca85765f9edf: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 746946402dbe: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d8301bcd629d: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 29a63ae8a81a: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": a3f9a1e139a3: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d26dfd8e7fa3: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f85ee0de9626: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 62a2655c7291: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": e7cfecc7dc4f: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 6ec6354fd7aa: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": aa64f69e9108: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 917a0cf7a407: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f9c35c64a06d: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d69fcaf21948: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 746946402dbe: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d8301bcd629d: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": e4449023a44a: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": c02e8359b610: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 526fcc714905: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 1ef6d2816d4e: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": be053e986af0: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": a3f9a1e139a3: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d26dfd8e7fa3: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f85ee0de9626: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 62a2655c7291: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": e7cfecc7dc4f: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 29a63ae8a81a: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 221b9b483f7d: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d54661257f2c: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f45e454718f4: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 299f4c331622: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 6b8ae7cbd31c: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 8e5bf736d257: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 3b1f7a5b3cba: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0024688c5ba0: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d76632a86b42: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 74665030181e: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d54661257f2c: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": e4449023a44a: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f9c35c64a06d: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": a740c2fbe373: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 8e5bf736d257: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d8fe0e160898: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": be053e986af0: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 299f4c331622: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0bd60890109d: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0c9face825f5: Pulling fs layer Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0024688c5ba0: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d76632a86b42: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d69fcaf21948: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f45e454718f4: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 3b1f7a5b3cba: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 6b8ae7cbd31c: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0c9face825f5: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 1ef6d2816d4e: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": a740c2fbe373: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 221b9b483f7d: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 6ec6354fd7aa: Waiting Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": dccb20f57e48: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": dccb20f57e48: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 120136251f1a: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 120136251f1a: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 746946402dbe: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 746946402dbe: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d8301bcd629d: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": b549f31133a9: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": b549f31133a9: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 2126ba32b6e6: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 2126ba32b6e6: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d26dfd8e7fa3: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d26dfd8e7fa3: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f85ee0de9626: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f85ee0de9626: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": e7cfecc7dc4f: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": e7cfecc7dc4f: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 62a2655c7291: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 62a2655c7291: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": aa64f69e9108: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": aa64f69e9108: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 6ec6354fd7aa: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 6ec6354fd7aa: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": a3f9a1e139a3: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": a3f9a1e139a3: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 7e783fa1d768: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 7e783fa1d768: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 917a0cf7a407: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 917a0cf7a407: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d69fcaf21948: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f9c35c64a06d: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f9c35c64a06d: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": e4449023a44a: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": e4449023a44a: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 526fcc714905: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 526fcc714905: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": c02e8359b610: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": c02e8359b610: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 1ef6d2816d4e: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 1ef6d2816d4e: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": b549f31133a9: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": be053e986af0: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 221b9b483f7d: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 221b9b483f7d: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d54661257f2c: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d54661257f2c: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f45e454718f4: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f45e454718f4: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 299f4c331622: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 299f4c331622: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 6b8ae7cbd31c: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 6b8ae7cbd31c: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 3b1f7a5b3cba: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 8e5bf736d257: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 8e5bf736d257: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0024688c5ba0: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0024688c5ba0: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d76632a86b42: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d76632a86b42: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 74665030181e: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 29a63ae8a81a: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 29a63ae8a81a: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d8fe0e160898: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": a740c2fbe373: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": a740c2fbe373: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0bd60890109d: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0bd60890109d: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0c9face825f5: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0c9face825f5: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": ca85765f9edf: Verifying Checksum Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": ca85765f9edf: Download complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 7e783fa1d768: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": dccb20f57e48: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 2126ba32b6e6: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 120136251f1a: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": ca85765f9edf: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 746946402dbe: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d8301bcd629d: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 29a63ae8a81a: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": a3f9a1e139a3: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d26dfd8e7fa3: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f85ee0de9626: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 62a2655c7291: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": e7cfecc7dc4f: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 6ec6354fd7aa: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": aa64f69e9108: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 917a0cf7a407: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f9c35c64a06d: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d69fcaf21948: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": e4449023a44a: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": c02e8359b610: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 526fcc714905: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 1ef6d2816d4e: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": be053e986af0: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 221b9b483f7d: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d54661257f2c: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": f45e454718f4: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 299f4c331622: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 6b8ae7cbd31c: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 8e5bf736d257: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 3b1f7a5b3cba: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0024688c5ba0: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d76632a86b42: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 74665030181e: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": a740c2fbe373: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": d8fe0e160898: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0bd60890109d: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0c9face825f5: Pull complete Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Digest: sha256:a69161327496d5c147fdb102570a7b9baba6d6858757864ddb130051f255771a Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-builder:latest Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": ---> 801c33152a37 Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Step 2/5 : RUN apt-get update && apt install -y cmake Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": ---> Running in 0c512011bfe4 Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Hit:1 http://security.ubuntu.com/ubuntu focal-security InRelease Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Hit:2 http://archive.ubuntu.com/ubuntu focal InRelease Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Hit:3 http://archive.ubuntu.com/ubuntu focal-updates InRelease Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Hit:4 http://archive.ubuntu.com/ubuntu focal-backports InRelease Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Reading package lists... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234":  Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Reading package lists... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Building dependency tree... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Reading state information... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": The following packages were automatically installed and are no longer required: Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": autotools-dev libsigsegv2 m4 Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Use 'apt autoremove' to remove them. Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": The following additional packages will be installed: Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Suggested packages: Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": cmake-doc ninja-build lrzip Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": The following NEW packages will be installed: Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": cmake cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Need to get 15.0 MB of archives. Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": After this operation, 65.0 MB of additional disk space will be used. Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libicu66 amd64 66.1-2ubuntu2.1 [8515 kB] Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2 amd64 2.9.10+dfsg-5ubuntu0.20.04.10 [640 kB] Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1 amd64 1.34.2-1ubuntu1.5 [80.9 kB] Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake-data all 3.16.3-1ubuntu1.20.04.1 [1613 kB] Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libarchive13 amd64 3.4.0-2ubuntu1.5 [327 kB] Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake amd64 3.16.3-1ubuntu1.20.04.1 [3668 kB] Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": debconf: delaying package configuration, since apt-utils is not installed Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Fetched 15.0 MB in 0s (37.8 MB/s) Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Selecting previously unselected package libicu66:amd64. Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17483 files and directories currently installed.) Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Preparing to unpack .../0-libicu66_66.1-2ubuntu2.1_amd64.deb ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Unpacking libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Selecting previously unselected package libxml2:amd64. Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Preparing to unpack .../1-libxml2_2.9.10+dfsg-5ubuntu0.20.04.10_amd64.deb ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Unpacking libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.10) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Selecting previously unselected package libuv1:amd64. Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Preparing to unpack .../2-libuv1_1.34.2-1ubuntu1.5_amd64.deb ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Unpacking libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Selecting previously unselected package cmake-data. Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Preparing to unpack .../3-cmake-data_3.16.3-1ubuntu1.20.04.1_all.deb ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Unpacking cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Selecting previously unselected package libarchive13:amd64. Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Preparing to unpack .../4-libarchive13_3.4.0-2ubuntu1.5_amd64.deb ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Unpacking libarchive13:amd64 (3.4.0-2ubuntu1.5) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Selecting previously unselected package libjsoncpp1:amd64. Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Preparing to unpack .../5-libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Selecting previously unselected package librhash0:amd64. Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Preparing to unpack .../6-librhash0_1.3.9-1_amd64.deb ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Unpacking librhash0:amd64 (1.3.9-1) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Selecting previously unselected package cmake. Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Preparing to unpack .../7-cmake_3.16.3-1ubuntu1.20.04.1_amd64.deb ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Unpacking cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Setting up libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Setting up libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Setting up librhash0:amd64 (1.3.9-1) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Setting up cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Setting up libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.10) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Setting up libarchive13:amd64 (3.4.0-2ubuntu1.5) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Setting up cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Processing triggers for libc-bin (2.31-0ubuntu9.18) ... Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Removing intermediate container 0c512011bfe4 Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": ---> 2783f7288b58 Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Step 3/5 : RUN git clone --depth 1 https://github.com/openbabel/openbabel.git Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": ---> Running in 41a0a1b08e96 Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Cloning into 'openbabel'... 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Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Removing intermediate container 41a0a1b08e96 Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": ---> 8f366170bcf6 Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Step 4/5 : COPY *.sh $SRC/ Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": ---> db922e26e11c Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Step 5/5 : WORKDIR $SRC/openbabel Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": ---> Running in 3b7b9970697a Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Removing intermediate container 3b7b9970697a Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": ---> a2974077be18 Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Successfully built a2974077be18 Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Successfully tagged gcr.io/oss-fuzz/openbabel:latest Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234": Successfully tagged us-central1-docker.pkg.dev/oss-fuzz/unsafe/openbabel:latest Finished Step #1 - "build-c8629337-d381-4bd3-903c-41f30ed21234" Starting Step #2 - "srcmap" Step #2 - "srcmap": Already have image: gcr.io/oss-fuzz/openbabel Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + SRCMAP=/tmp/fileNTzpGP Step #2 - "srcmap": + echo '{}' Step #2 - "srcmap": + PATHS_TO_SCAN=/src Step #2 - "srcmap": + [[ c++ == \g\o ]] Step #2 - "srcmap": ++ find /src -name .git -type d Step #2 - "srcmap": + for DOT_GIT_DIR in $(find $PATHS_TO_SCAN -name ".git" -type d) Step #2 - "srcmap": ++ dirname /src/openbabel/.git Step #2 - "srcmap": + GIT_DIR=/src/openbabel Step #2 - "srcmap": + cd /src/openbabel Step #2 - "srcmap": ++ git config --get remote.origin.url Step #2 - "srcmap": + GIT_URL=https://github.com/openbabel/openbabel.git Step #2 - "srcmap": ++ git rev-parse HEAD Step #2 - "srcmap": + GIT_REV=54e394ddaf7bc3744cb631d7377610d1cc4345da Step #2 - "srcmap": + jq_inplace /tmp/fileNTzpGP '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "54e394ddaf7bc3744cb631d7377610d1cc4345da" }' Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + F=/tmp/fileOBb2W9 Step #2 - "srcmap": + cat /tmp/fileNTzpGP Step #2 - "srcmap": + jq '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "54e394ddaf7bc3744cb631d7377610d1cc4345da" }' Step #2 - "srcmap": + mv /tmp/fileOBb2W9 /tmp/fileNTzpGP Step #2 - "srcmap": ++ find /src -name .svn -type d Step #2 - "srcmap": ++ find /src -name .hg -type d Step #2 - "srcmap": + '[' '' '!=' '' ']' Step #2 - "srcmap": + cat /tmp/fileNTzpGP Step #2 - "srcmap": + rm /tmp/fileNTzpGP Step #2 - "srcmap": { Step #2 - "srcmap": "/src/openbabel": { Step #2 - "srcmap": "type": "git", Step #2 - "srcmap": "url": "https://github.com/openbabel/openbabel.git", Step #2 - "srcmap": "rev": "54e394ddaf7bc3744cb631d7377610d1cc4345da" Step #2 - "srcmap": } Step #2 - "srcmap": } Finished Step #2 - "srcmap" Starting Step #3 - "compile-libfuzzer-coverage-x86_64" Step #3 - "compile-libfuzzer-coverage-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #3 - "compile-libfuzzer-coverage-x86_64": --------------------------------------------------------------- Step #3 - "compile-libfuzzer-coverage-x86_64": vm.mmap_rnd_bits = 28 Step #3 - "compile-libfuzzer-coverage-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #3 - "compile-libfuzzer-coverage-x86_64": --------------------------------------------------------------- Step #3 - "compile-libfuzzer-coverage-x86_64": CC=clang Step #3 - "compile-libfuzzer-coverage-x86_64": CXX=clang++ Step #3 - "compile-libfuzzer-coverage-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fprofile-instr-generate -fcoverage-mapping -pthread -Wl,--no-as-needed -Wl,-ldl -Wl,-lm -Wno-unused-command-line-argument Step #3 - "compile-libfuzzer-coverage-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fprofile-instr-generate -fcoverage-mapping -pthread -Wl,--no-as-needed -Wl,-ldl -Wl,-lm -Wno-unused-command-line-argument -stdlib=libc++ Step #3 - "compile-libfuzzer-coverage-x86_64": RUSTFLAGS=--cfg fuzzing -Cdebuginfo=1 -Cforce-frame-pointers -Cinstrument-coverage -C link-arg=-lc++ Step #3 - "compile-libfuzzer-coverage-x86_64": --------------------------------------------------------------- Step #3 - "compile-libfuzzer-coverage-x86_64": + export 'CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fprofile-instr-generate -fcoverage-mapping -pthread -Wl,--no-as-needed -Wl,-ldl -Wl,-lm -Wno-unused-command-line-argument -stdlib=libc++ -std=c++17' Step #3 - "compile-libfuzzer-coverage-x86_64": + CXXFLAGS='-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fprofile-instr-generate -fcoverage-mapping -pthread -Wl,--no-as-needed -Wl,-ldl -Wl,-lm -Wno-unused-command-line-argument -stdlib=libc++ -std=c++17' Step #3 - "compile-libfuzzer-coverage-x86_64": + sed -i 's/CMAKE_CXX_STANDARD 11/CMAKE_CXX_STANDARD 17/g' CMakeLists.txt Step #3 - "compile-libfuzzer-coverage-x86_64": + mkdir build Step #3 - "compile-libfuzzer-coverage-x86_64": + cd build Step #3 - "compile-libfuzzer-coverage-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #3 - "compile-libfuzzer-coverage-x86_64": -- The C compiler identification is Clang 22.0.0 Step #3 - "compile-libfuzzer-coverage-x86_64": -- The CXX compiler identification is Clang 22.0.0 Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting C compiler ABI info Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting C compiler ABI info - done Step #3 - "compile-libfuzzer-coverage-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting C compile features Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting C compile features - done Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting CXX compiler ABI info Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting CXX compiler ABI info - done Step #3 - "compile-libfuzzer-coverage-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting CXX compile features Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting CXX compile features - done Step #3 - "compile-libfuzzer-coverage-x86_64": -- Using included inchi library. Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #3 - "compile-libfuzzer-coverage-x86_64": CMake Warning at CMakeLists.txt:168 (message): Step #3 - "compile-libfuzzer-coverage-x86_64": libxml2 not found - disabling CML support! Step #3 - "compile-libfuzzer-coverage-x86_64": Step #3 - "compile-libfuzzer-coverage-x86_64":  Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for conio.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for conio.h - not found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for sys/time.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for sys/time.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for time.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for time.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for strings.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for strings.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for regex.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for regex.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for C++ include sstream Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for C++ include sstream - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for rint Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for rint - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for snprintf Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for snprintf - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for sranddev Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for sranddev - not found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for strcasecmp Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for strcasecmp - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for strncasecmp Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for strncasecmp - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for xdrstdio_create Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for xdrstdio_create - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for dlopen in dl Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for dlopen in dl - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for sys/types.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for sys/types.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for stdint.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for stdint.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for stddef.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for stddef.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Check size of clock_t Step #3 - "compile-libfuzzer-coverage-x86_64": -- Check size of clock_t - done Step #3 - "compile-libfuzzer-coverage-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #3 - "compile-libfuzzer-coverage-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Eigen3 (missing: Eigen3_DIR) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #3 - "compile-libfuzzer-coverage-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #3 - "compile-libfuzzer-coverage-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #3 - "compile-libfuzzer-coverage-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #3 - "compile-libfuzzer-coverage-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #3 - "compile-libfuzzer-coverage-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #3 - "compile-libfuzzer-coverage-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #3 - "compile-libfuzzer-coverage-x86_64": -- Found Threads: TRUE Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for getopt Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for getopt - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- GUI will not be built Step #3 - "compile-libfuzzer-coverage-x86_64": -- Found Python: /usr/local/bin/python3.11 (found version "3.11.13") found components: Interpreter Step #3 - "compile-libfuzzer-coverage-x86_64": -- Configuring done (3.6s) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Generating done (0.1s) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Build files have been written to: /src/openbabel/build Step #3 - "compile-libfuzzer-coverage-x86_64": ++ nproc Step #3 - "compile-libfuzzer-coverage-x86_64": + make -j 32 Step #3 - "compile-libfuzzer-coverage-x86_64": [ 0%] Generating atomtyp.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 0%] Generating bondtyp.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 1%] Generating phmodeldata.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 1%] Generating resdata.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 1%] Generating torlib.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 1%] Generating types.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 1%] Generating atomizationenergies.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 2%] Generating spacegroups.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 2%] Generating ringtyp.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 2%] Built target data_headers Step #3 - "compile-libfuzzer-coverage-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/macrocycle.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 82 | _ival=nullptr; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/mcdlutil.cpp:5047:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #3 - "compile-libfuzzer-coverage-x86_64": 5047 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:526:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 526 | rab = OBForceField::VectorLengthDerivative(da, db); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/forcefield.h:1568:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 1568 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:543:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 543 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/forcefield.h:1584:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 1584 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:562:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 562 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/forcefield.h:1617:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 1617 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1224:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1224 | rl.SetFixAtoms(fixed); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:624:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 624 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1345:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1345 | rl.SetFixAtoms(fixed); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:624:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 624 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1492:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1492 | rl.SetFixAtoms(fixed); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:624:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 624 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1678:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1678 | rl.SetFixAtoms(fixed); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:624:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 624 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 2 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": 3 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/rotor.cpp:335:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 335 | rotor->SetEvalAtoms(eval); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:434:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 434 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 9 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #3 - "compile-libfuzzer-coverage-x86_64": 310 | else if (vs[0][0] == '2') Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:927:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #3 - "compile-libfuzzer-coverage-x86_64": 927 | switch(pRD->ReactionType) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:1006:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #3 - "compile-libfuzzer-coverage-x86_64": 1006 | switch(pRD->ReactionType) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #3 - "compile-libfuzzer-coverage-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~ ^~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 2 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #3 - "compile-libfuzzer-coverage-x86_64": 158 | switch (chirality) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^~~~~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:575:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #3 - "compile-libfuzzer-coverage-x86_64": 575 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:698:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-libfuzzer-coverage-x86_64": 698 | if (fabs(lf) > MAXABS) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~ ^~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:33:23: note: expanded from macro 'MAXABS' Step #3 - "compile-libfuzzer-coverage-x86_64": 33 | #define MAXABS INT_MAX-2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~~~~^~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:711:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-libfuzzer-coverage-x86_64": 711 | if (fabs(lf) > MAXABS) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~ ^~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:33:23: note: expanded from macro 'MAXABS' Step #3 - "compile-libfuzzer-coverage-x86_64": 33 | #define MAXABS INT_MAX-2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~~~~^~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:724:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-libfuzzer-coverage-x86_64": 724 | if (fabs(lf) > MAXABS) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~ ^~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:33:23: note: expanded from macro 'MAXABS' Step #3 - "compile-libfuzzer-coverage-x86_64": 33 | #define MAXABS INT_MAX-2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~~~~^~ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:750:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-libfuzzer-coverage-x86_64": 750 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:33:23: note: expanded from macro 'MAXABS' Step #3 - "compile-libfuzzer-coverage-x86_64": 33 | #define MAXABS INT_MAX-2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~~~~^~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:749:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-libfuzzer-coverage-x86_64": 749 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:33:23: note: expanded from macro 'MAXABS' Step #3 - "compile-libfuzzer-coverage-x86_64": 33 | #define MAXABS INT_MAX-2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~~~~^~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:748:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-libfuzzer-coverage-x86_64": 748 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:33:23: note: expanded from macro 'MAXABS' Step #3 - "compile-libfuzzer-coverage-x86_64": 33 | #define MAXABS INT_MAX-2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~~~~^~ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/inchiformat.h:154:50: warning: while loop has empty body [-Wempty-body] Step #3 - "compile-libfuzzer-coverage-x86_64": 154 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/inchiformat.h:154:50: note: put the semicolon on a separate line to silence this warning Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/inchiformat.h:159:50: warning: while loop has empty body [-Wempty-body] Step #3 - "compile-libfuzzer-coverage-x86_64": 159 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/inchiformat.h:159:50: note: put the semicolon on a separate line to silence this warning Step #3 - "compile-libfuzzer-coverage-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 2 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": 6 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:516:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 516 | rab = OBForceField::VectorLengthDerivative(da, db); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/forcefield.h:1568:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 1568 | OB_DEPRECA[ 66%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": TED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/depict/depict.cpp:1242:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #3 - "compile-libfuzzer-coverage-x86_64": 1242 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~~~~~~~~ ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/depict/depict.cpp:1241:24: note: array 'dashpattern' declared here Step #3 - "compile-libfuzzer-coverage-x86_64": 1241 | static const float dashpattern[] = {5., 5.}; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/depict/depict.cpp:1242:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #3 - "compile-libfuzzer-coverage-x86_64": 1242 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 73%] Linking CXX static library libopenbabel.a Step #3 - "compile-libfuzzer-coverage-x86_64": [ 73%] Built target openbabel Step #3 - "compile-libfuzzer-coverage-x86_64": [ 74%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 74%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 74%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 75%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 75%] Building CXX object test/CMakeFiles/fuzz_molecule.dir/fuzz/fuzz_molecule.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 77%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_smart.dir/fuzz/fuzz_smart.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 77%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_empty_write.dir/fuzz/fuzz_empty_write.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 77%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/fuzzregresstest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/ketformattest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 85%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #3 - "compile-libfuzzer-coverage-x86_64": [ 85%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #3 - "compile-libfuzzer-coverage-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 86%] Linking CXX executable ../bin/fuzz_smart Step #3 - "compile-libfuzzer-coverage-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 87%] Linking CXX executable ../bin/obabel Step #3 - "compile-libfuzzer-coverage-x86_64": [ 87%] Linking CXX executable ../bin/roundtrip Step #3 - "compile-libfuzzer-coverage-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_convert Step #3 - "compile-libfuzzer-coverage-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 89%] Linking CXX executable ../bin/fuzz_molecule Step #3 - "compile-libfuzzer-coverage-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 90%] Linking CXX executable ../bin/fuzz_empty_write Step #3 - "compile-libfuzzer-coverage-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 94%] Built target fuzz_obconversion_smiles Step #3 - "compile-libfuzzer-coverage-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 94%] Built target fuzz_obconversion_sdf Step #3 - "compile-libfuzzer-coverage-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 95%] Built target fuzz_smart Step #3 - "compile-libfuzzer-coverage-x86_64": [ 95%] Built target obabel Step #3 - "compile-libfuzzer-coverage-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:111:12: warning: null passed to a callee that requires a non-null argument [-Wnonnull] Step #3 - "compile-libfuzzer-coverage-x86_64": 111 | return nullptr; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^~~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 95%] Built target roundtrip Step #3 - "compile-libfuzzer-coverage-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-libfuzzer-coverage-x86_64": 255 | // / \  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-libfuzzer-coverage-x86_64": 270 | // / \  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-libfuzzer-coverage-x86_64": 285 | // \  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-libfuzzer-coverage-x86_64": 287 | // \  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-libfuzzer-coverage-x86_64": 310 | // \  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-libfuzzer-coverage-x86_64": 432 | // \  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereotest.cpp:103:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #3 - "compile-libfuzzer-coverage-x86_64": 103 | switch (units.at(i).type) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^~~~~~~~~~~~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereotest.cpp:133:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #3 - "compile-libfuzzer-coverage-x86_64": 133 | switch (units.at(i).type) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^~~~~~~~~~~~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 96%] Built target fuzz_convert Step #3 - "compile-libfuzzer-coverage-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 97%] Built target fuzz_molecule Step #3 - "compile-libfuzzer-coverage-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 97%] Built target fuzz_empty_write Step #3 - "compile-libfuzzer-coverage-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 7 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": 2 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #3 - "compile-libfuzzer-coverage-x86_64": [100%] Built target test_runner Step #3 - "compile-libfuzzer-coverage-x86_64": + cp bin/fuzz_convert bin/fuzz_empty_write bin/fuzz_molecule bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles bin/fuzz_smart /workspace/out/libfuzzer-coverage-x86_64/ Finished Step #3 - "compile-libfuzzer-coverage-x86_64" Starting Step #4 Step #4: Pulling image: gcr.io/oss-fuzz-base/base-runner Step #4: Using default tag: latest Step #4: latest: Pulling from oss-fuzz-base/base-runner Step #4: b549f31133a9: Already exists Step #4: 7e783fa1d768: Already exists Step #4: dccb20f57e48: Already exists Step #4: 2dcd69a82473: Pulling fs layer Step #4: c9941d5b53dc: Pulling fs layer Step #4: e89cdda2adb8: Pulling fs layer Step #4: 544a236cc2df: Pulling fs layer Step #4: c88e3b2f920d: Pulling fs layer Step #4: 1af7baa48f90: Pulling fs layer Step #4: 2e04d1219cdb: Pulling fs layer Step #4: 999c686a0fbd: Pulling fs layer Step #4: c3a76b8041f7: Pulling fs layer Step #4: 0c105c78781a: Pulling fs layer Step #4: 3a2fba26564e: Pulling fs layer Step #4: e7aa17ca6459: Pulling fs layer Step #4: 7556efabcf46: Pulling fs layer Step #4: 6f68fac3dd20: Pulling fs layer Step #4: 9403817d52c6: Pulling fs layer Step #4: a85759bed276: Pulling fs layer Step #4: 0f41dafea62c: Pulling fs layer Step #4: 9375569908a4: Pulling fs layer Step #4: 0c105c78781a: Waiting Step #4: 496cbc70d26a: Pulling fs layer Step #4: 3a2fba26564e: Waiting Step #4: a3e8923ddc0d: Pulling fs layer Step #4: e7aa17ca6459: Waiting Step #4: 58938f63fe2e: Pulling fs layer Step #4: 28be54f8b3f2: Pulling fs layer Step #4: 2e04d1219cdb: Waiting Step #4: 999c686a0fbd: Waiting Step #4: 0ab4e5fd3974: Pulling fs layer Step #4: c3a76b8041f7: Waiting Step #4: e585942f66e5: Pulling fs layer Step #4: 9375569908a4: Waiting Step #4: b0fc6ef86566: Pulling fs layer Step #4: 0f41dafea62c: Waiting Step #4: 496cbc70d26a: Waiting Step #4: a3e8923ddc0d: Waiting Step #4: 7556efabcf46: Waiting Step #4: 58938f63fe2e: Waiting Step #4: 28be54f8b3f2: Waiting Step #4: 0ab4e5fd3974: Waiting Step #4: 6f68fac3dd20: Waiting Step #4: a85759bed276: Waiting Step #4: e585942f66e5: Waiting Step #4: 9403817d52c6: Waiting Step #4: e89cdda2adb8: Verifying Checksum Step #4: e89cdda2adb8: Download complete Step #4: 2dcd69a82473: Verifying Checksum Step #4: 2dcd69a82473: Download complete Step #4: c88e3b2f920d: Verifying Checksum Step #4: c88e3b2f920d: Download complete Step #4: 544a236cc2df: Verifying Checksum Step #4: 544a236cc2df: Download complete Step #4: c9941d5b53dc: Verifying Checksum Step #4: c9941d5b53dc: Download complete Step #4: c3a76b8041f7: Verifying Checksum Step #4: c3a76b8041f7: Download complete Step #4: 2dcd69a82473: Pull complete Step #4: 2e04d1219cdb: Download complete Step #4: 999c686a0fbd: Download complete Step #4: 7556efabcf46: Download complete Step #4: e7aa17ca6459: Verifying Checksum Step #4: e7aa17ca6459: Download complete Step #4: 3a2fba26564e: Verifying Checksum Step #4: 3a2fba26564e: Download complete Step #4: c9941d5b53dc: Pull complete Step #4: 1af7baa48f90: Verifying Checksum Step #4: 1af7baa48f90: Download complete Step #4: 9403817d52c6: Download complete Step #4: e89cdda2adb8: Pull complete Step #4: 0f41dafea62c: Verifying Checksum Step #4: 0f41dafea62c: Download complete Step #4: 9375569908a4: Download complete Step #4: 544a236cc2df: Pull complete Step #4: 0c105c78781a: Download complete Step #4: 58938f63fe2e: Download complete Step #4: a3e8923ddc0d: Download complete Step #4: c88e3b2f920d: Pull complete Step #4: 0ab4e5fd3974: Verifying Checksum Step #4: 0ab4e5fd3974: Download complete Step #4: b0fc6ef86566: Verifying Checksum Step #4: b0fc6ef86566: Download complete Step #4: 28be54f8b3f2: Verifying Checksum Step #4: 28be54f8b3f2: Download complete Step #4: 496cbc70d26a: Verifying Checksum Step #4: 496cbc70d26a: Download complete Step #4: 6f68fac3dd20: Verifying Checksum Step #4: 6f68fac3dd20: Download complete Step #4: e585942f66e5: Verifying Checksum Step #4: e585942f66e5: Download complete Step #4: a85759bed276: Verifying Checksum Step #4: a85759bed276: Download complete Step #4: 1af7baa48f90: Pull complete Step #4: 2e04d1219cdb: Pull complete Step #4: 999c686a0fbd: Pull complete Step #4: c3a76b8041f7: Pull complete Step #4: 0c105c78781a: Pull complete Step #4: 3a2fba26564e: Pull complete Step #4: e7aa17ca6459: Pull complete Step #4: 7556efabcf46: Pull complete Step #4: 6f68fac3dd20: Pull complete Step #4: 9403817d52c6: Pull complete Step #4: a85759bed276: Pull complete Step #4: 0f41dafea62c: Pull complete Step #4: 9375569908a4: Pull complete Step #4: 496cbc70d26a: Pull complete Step #4: a3e8923ddc0d: Pull complete Step #4: 58938f63fe2e: Pull complete Step #4: 28be54f8b3f2: Pull complete Step #4: 0ab4e5fd3974: Pull complete Step #4: e585942f66e5: Pull complete Step #4: b0fc6ef86566: Pull complete Step #4: Digest: sha256:49e4d603d5f7e1f02355eba362cc873fb0dd3fc76ca000a96ecc100fe72a88db Step #4: Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-runner:latest Step #4: gcr.io/oss-fuzz-base/base-runner:latest Finished Step #4 Starting Step #5 Step #5: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Step #5: [/corpus/fuzz_molecule.zip] Step #5: End-of-central-directory signature not found. Either this file is not Step #5: a zipfile, or it constitutes one disk of a multi-part archive. In the Step #5: latter case the central directory and zipfile comment will be found on Step #5: the last disk(s) of this archive. Step #5: unzip: cannot find zipfile directory in one of /corpus/fuzz_molecule.zip or Step #5: /corpus/fuzz_molecule.zip.zip, and cannot find /corpus/fuzz_molecule.zip.ZIP, period. Step #5: Failed to unpack the corpus for fuzz_molecule. This usually means that corpus backup for a particular fuzz target does not exist. If a fuzz target was added in the last 24 hours, please wait one more day. Otherwise, something is wrong with the fuzz target or the infrastructure, and corpus pruning task does not finish successfully. Step #5: [/corpus/fuzz_smart.zip] Step #5: End-of-central-directory signature not found. Either this file is not Step #5: a zipfile, or it constitutes one disk of a multi-part archive. In the Step #5: latter case the central directory and zipfile comment will be found on Step #5: the last disk(s) of this archive. Step #5: unzip: cannot find zipfile directory in one of /corpus/fuzz_smart.zip or Step #5: /corpus/fuzz_smart.zip.zip, and cannot find /corpus/fuzz_smart.zip.ZIP, period. Step #5: Failed to unpack the corpus for fuzz_smart. This usually means that corpus backup for a particular fuzz target does not exist. If a fuzz target was added in the last 24 hours, please wait one more day. Otherwise, something is wrong with the fuzz target or the infrastructure, and corpus pruning task does not finish successfully. Step #5: ******************************************************************************** Step #5: Code coverage report generation failed. Step #5: To reproduce, run: Step #5: python infra/helper.py build_image openbabel Step #5: python infra/helper.py build_fuzzers --sanitizer coverage openbabel Step #5: python infra/helper.py coverage openbabel Step #5: ******************************************************************************** Finished Step #5 ERROR ERROR: build step 5 "gcr.io/oss-fuzz-base/base-runner" failed: step exited with non-zero status: 1