starting build "5f9b2981-8228-4103-964e-e913b89ec3a7" FETCHSOURCE BUILD Starting Step #0 Step #0: Already have image (with digest): gcr.io/cloud-builders/git Step #0: Cloning into 'oss-fuzz'... Finished Step #0 Starting Step #1 Step #1: Already have image (with digest): gcr.io/cloud-builders/docker Step #1: Sending build context to Docker daemon 5.12kB Step #1: Step 1/5 : FROM gcr.io/oss-fuzz-base/base-builder Step #1: latest: Pulling from oss-fuzz-base/base-builder Step #1: b549f31133a9: Pulling fs layer Step #1: dd0bbb17640b: Pulling fs layer Step #1: 62275a527176: Pulling fs layer Step #1: 111633040162: Pulling fs layer Step #1: 5bf7dd58428c: Pulling fs layer Step #1: 632c9b314f45: Pulling fs layer Step #1: 8ae501891266: Pulling fs layer Step #1: 3058f8e90c86: Pulling fs layer Step #1: c377fa4fb781: Pulling fs layer Step #1: 2336eb300fb9: Pulling fs layer Step #1: 09429854c898: Pulling fs layer Step #1: 71af8faf61ed: Pulling fs layer Step #1: 5bf7dd58428c: Waiting Step #1: 687fd097ee80: Pulling fs layer Step #1: 7f1e63401161: Pulling fs layer Step #1: 632c9b314f45: Waiting Step #1: 111633040162: Waiting Step #1: 2336eb300fb9: Waiting Step #1: 71af8faf61ed: Waiting Step #1: 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Pull complete Step #1: 0d3facbb2d8c: Pull complete Step #1: aa9066b95eb6: Pull complete Step #1: ff11ed875e6f: Pull complete Step #1: 33f6a6d38c7e: Pull complete Step #1: 5ecd2cf410de: Pull complete Step #1: 702a45c3ae33: Pull complete Step #1: df6fed191aed: Pull complete Step #1: Digest: sha256:c14f2415c900600181b57d8093e730eca5852792378c243bf284a9be0b760f40 Step #1: Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-builder:latest Step #1: ---> e17bfed5df09 Step #1: Step 2/5 : RUN apt-get update && apt install -y cmake Step #1: ---> Running in 67a57ae2f871 Step #1: Get:1 http://security.ubuntu.com/ubuntu focal-security InRelease [128 kB] Step #1: Hit:2 http://archive.ubuntu.com/ubuntu focal InRelease Step #1: Get:3 http://archive.ubuntu.com/ubuntu focal-updates InRelease [128 kB] Step #1: Get:4 http://archive.ubuntu.com/ubuntu focal-backports InRelease [128 kB] Step #1: Fetched 383 kB in 1s (476 kB/s) Step #1: Reading package lists... Step #1:  Step #1: WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Step #1: Step #1: Reading package lists... Step #1: Building dependency tree... Step #1: Reading state information... Step #1: The following additional packages will be installed: Step #1: cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1: Suggested packages: Step #1: cmake-doc ninja-build lrzip Step #1: The following NEW packages will be installed: Step #1: cmake cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1: 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Step #1: Need to get 15.0 MB of archives. Step #1: After this operation, 65.0 MB of additional disk space will be used. Step #1: Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libicu66 amd64 66.1-2ubuntu2.1 [8515 kB] Step #1: Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2 amd64 2.9.10+dfsg-5ubuntu0.20.04.7 [640 kB] Step #1: Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1 amd64 1.34.2-1ubuntu1.5 [80.9 kB] Step #1: Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake-data all 3.16.3-1ubuntu1.20.04.1 [1613 kB] Step #1: Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libarchive13 amd64 3.4.0-2ubuntu1.4 [327 kB] Step #1: Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] Step #1: Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] Step #1: Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake amd64 3.16.3-1ubuntu1.20.04.1 [3668 kB] Step #1: debconf: delaying package configuration, since apt-utils is not installed Step #1: Fetched 15.0 MB in 1s (20.3 MB/s) Step #1: Selecting previously unselected package libicu66:amd64. Step #1: (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17393 files and directories currently installed.) Step #1: Preparing to unpack .../0-libicu66_66.1-2ubuntu2.1_amd64.deb ... Step #1: Unpacking libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1: Selecting previously unselected package libxml2:amd64. Step #1: Preparing to unpack .../1-libxml2_2.9.10+dfsg-5ubuntu0.20.04.7_amd64.deb ... Step #1: Unpacking libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.7) ... Step #1: Selecting previously unselected package libuv1:amd64. Step #1: Preparing to unpack .../2-libuv1_1.34.2-1ubuntu1.5_amd64.deb ... Step #1: Unpacking libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1: Selecting previously unselected package cmake-data. Step #1: Preparing to unpack .../3-cmake-data_3.16.3-1ubuntu1.20.04.1_all.deb ... Step #1: Unpacking cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1: Selecting previously unselected package libarchive13:amd64. Step #1: Preparing to unpack .../4-libarchive13_3.4.0-2ubuntu1.4_amd64.deb ... Step #1: Unpacking libarchive13:amd64 (3.4.0-2ubuntu1.4) ... Step #1: Selecting previously unselected package libjsoncpp1:amd64. Step #1: Preparing to unpack .../5-libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... Step #1: Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1: Selecting previously unselected package librhash0:amd64. Step #1: Preparing to unpack .../6-librhash0_1.3.9-1_amd64.deb ... Step #1: Unpacking librhash0:amd64 (1.3.9-1) ... Step #1: Selecting previously unselected package cmake. Step #1: Preparing to unpack .../7-cmake_3.16.3-1ubuntu1.20.04.1_amd64.deb ... Step #1: Unpacking cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1: Setting up libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1: Setting up libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1: Setting up librhash0:amd64 (1.3.9-1) ... Step #1: Setting up cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1: Setting up libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.7) ... Step #1: Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1: Setting up libarchive13:amd64 (3.4.0-2ubuntu1.4) ... Step #1: Setting up cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1: Processing triggers for libc-bin (2.31-0ubuntu9.16) ... Step #1: Removing intermediate container 67a57ae2f871 Step #1: ---> a039cc57573d Step #1: Step 3/5 : RUN git clone --depth 1 https://github.com/openbabel/openbabel.git Step #1: ---> Running in 6eb556baeef4 Step #1: Cloning into 'openbabel'... 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Step #1: Removing intermediate container 6eb556baeef4 Step #1: ---> c3f97eb7a96b Step #1: Step 4/5 : COPY build.sh $SRC Step #1: ---> c697e51cdc5b Step #1: Step 5/5 : WORKDIR $SRC/openbabel Step #1: ---> Running in 3a63df835acd Step #1: Removing intermediate container 3a63df835acd Step #1: ---> d21c10c2a26c Step #1: Successfully built d21c10c2a26c Step #1: Successfully tagged gcr.io/oss-fuzz/openbabel:latest Finished Step #1 Starting Step #2 - "srcmap" Step #2 - "srcmap": Already have image: gcr.io/oss-fuzz/openbabel Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + SRCMAP=/tmp/fileCBRpPP Step #2 - "srcmap": + echo '{}' Step #2 - "srcmap": + PATHS_TO_SCAN=/src Step #2 - "srcmap": + [[ c++ == \g\o ]] Step #2 - "srcmap": ++ find /src -name .git -type d Step #2 - "srcmap": + for DOT_GIT_DIR in $(find $PATHS_TO_SCAN -name ".git" -type d) Step #2 - "srcmap": ++ dirname /src/openbabel/.git Step #2 - "srcmap": + GIT_DIR=/src/openbabel Step #2 - "srcmap": + cd /src/openbabel Step #2 - "srcmap": ++ git config --get remote.origin.url Step #2 - "srcmap": + GIT_URL=https://github.com/openbabel/openbabel.git Step #2 - "srcmap": ++ git rev-parse HEAD Step #2 - "srcmap": + GIT_REV=889c350feb179b43aa43985799910149d4eaa2bc Step #2 - "srcmap": + jq_inplace /tmp/fileCBRpPP '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "889c350feb179b43aa43985799910149d4eaa2bc" }' Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + F=/tmp/file4Ylg5c Step #2 - "srcmap": + cat /tmp/fileCBRpPP Step #2 - "srcmap": + jq '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "889c350feb179b43aa43985799910149d4eaa2bc" }' Step #2 - "srcmap": + mv /tmp/file4Ylg5c /tmp/fileCBRpPP Step #2 - "srcmap": ++ find /src -name .svn -type d Step #2 - "srcmap": ++ find /src -name .hg -type d Step #2 - "srcmap": + '[' '' '!=' '' ']' Step #2 - "srcmap": + cat /tmp/fileCBRpPP Step #2 - "srcmap": + rm /tmp/fileCBRpPP Step #2 - "srcmap": { Step #2 - "srcmap": "/src/openbabel": { Step #2 - "srcmap": "type": "git", Step #2 - "srcmap": "url": "https://github.com/openbabel/openbabel.git", Step #2 - "srcmap": "rev": "889c350feb179b43aa43985799910149d4eaa2bc" Step #2 - "srcmap": } Step #2 - "srcmap": } Finished Step #2 - "srcmap" Starting Step #3 - "compile-afl-address-x86_64" Step #3 - "compile-afl-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": vm.mmap_rnd_bits = 28 Step #3 - "compile-afl-address-x86_64": Copying precompiled AFL++ Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": AFL++ target compilation setup: Step #3 - "compile-afl-address-x86_64": AFL_IGNORE_UNKNOWN_ENVS=1 Step #3 - "compile-afl-address-x86_64": AFL_QUIET=1 Step #3 - "compile-afl-address-x86_64": AFL_IGNORE_PROBLEMS=1 Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": done. Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": CC=/src/aflplusplus/afl-clang-fast Step #3 - "compile-afl-address-x86_64": CXX=/src/aflplusplus/afl-clang-fast++ Step #3 - "compile-afl-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope Step #3 - "compile-afl-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -stdlib=libc++ Step #3 - "compile-afl-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": + mkdir build Step #3 - "compile-afl-address-x86_64": + cd build Step #3 - "compile-afl-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #3 - "compile-afl-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #3 - "compile-afl-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #3 - "compile-afl-address-x86_64": CMake. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #3 - "compile-afl-address-x86_64": CMake that the project does not need compatibility with older versions. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- The C compiler identification is Clang 18.1.8 Step #3 - "compile-afl-address-x86_64": -- The CXX compiler identification is Clang 18.1.8 Step #3 - "compile-afl-address-x86_64": -- Detecting C compiler ABI info Step #3 - "compile-afl-address-x86_64": -- Detecting C compiler ABI info - done Step #3 - "compile-afl-address-x86_64": -- Check for working C compiler: /src/aflplusplus/afl-clang-fast - skipped Step #3 - "compile-afl-address-x86_64": -- Detecting C compile features Step #3 - "compile-afl-address-x86_64": -- Detecting C compile features - done Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compiler ABI info Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compiler ABI info - done Step #3 - "compile-afl-address-x86_64": -- Check for working CXX compiler: /src/aflplusplus/afl-clang-fast++ - skipped Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compile features Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compile features - done Step #3 - "compile-afl-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #3 - "compile-afl-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #3 - "compile-afl-address-x86_64": of CMake. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #3 - "compile-afl-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #3 - "compile-afl-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #3 - "compile-afl-address-x86_64": behavior and not rely on setting a policy to OLD. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Using included inchi library. Step #3 - "compile-afl-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #3 - "compile-afl-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #3 - "compile-afl-address-x86_64": libxml2 not found - disabling CML support! Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #3 - "compile-afl-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #3 - "compile-afl-address-x86_64": -- Looking for conio.h Step #3 - "compile-afl-address-x86_64": -- Looking for conio.h - not found Step #3 - "compile-afl-address-x86_64": -- Looking for sys/time.h Step #3 - "compile-afl-address-x86_64": -- Looking for sys/time.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for time.h Step #3 - "compile-afl-address-x86_64": -- Looking for time.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for strings.h Step #3 - "compile-afl-address-x86_64": -- Looking for strings.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for regex.h Step #3 - "compile-afl-address-x86_64": -- Looking for regex.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for C++ include sstream Step #3 - "compile-afl-address-x86_64": -- Looking for C++ include sstream - found Step #3 - "compile-afl-address-x86_64": -- Looking for rint Step #3 - "compile-afl-address-x86_64": -- Looking for rint - found Step #3 - "compile-afl-address-x86_64": -- Looking for snprintf Step #3 - "compile-afl-address-x86_64": -- Looking for snprintf - found Step #3 - "compile-afl-address-x86_64": -- Looking for sranddev Step #3 - "compile-afl-address-x86_64": -- Looking for sranddev - not found Step #3 - "compile-afl-address-x86_64": -- Looking for strcasecmp Step #3 - "compile-afl-address-x86_64": -- Looking for strcasecmp - found Step #3 - "compile-afl-address-x86_64": -- Looking for strncasecmp Step #3 - "compile-afl-address-x86_64": -- Looking for strncasecmp - found Step #3 - "compile-afl-address-x86_64": -- Looking for xdrstdio_create Step #3 - "compile-afl-address-x86_64": -- Looking for xdrstdio_create - found Step #3 - "compile-afl-address-x86_64": -- Looking for dlopen in dl Step #3 - "compile-afl-address-x86_64": -- Looking for dlopen in dl - found Step #3 - "compile-afl-address-x86_64": -- Looking for sys/types.h Step #3 - "compile-afl-address-x86_64": -- Looking for sys/types.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for stdint.h Step #3 - "compile-afl-address-x86_64": -- Looking for stdint.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for stddef.h Step #3 - "compile-afl-address-x86_64": -- Looking for stddef.h - found Step #3 - "compile-afl-address-x86_64": -- Check size of clock_t Step #3 - "compile-afl-address-x86_64": -- Check size of clock_t - done Step #3 - "compile-afl-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #3 - "compile-afl-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #3 - "compile-afl-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #3 - "compile-afl-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #3 - "compile-afl-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #3 - "compile-afl-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #3 - "compile-afl-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #3 - "compile-afl-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #3 - "compile-afl-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #3 - "compile-afl-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #3 - "compile-afl-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #3 - "compile-afl-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #3 - "compile-afl-address-x86_64": -- Found Threads: TRUE Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #3 - "compile-afl-address-x86_64": -- Looking for getopt Step #3 - "compile-afl-address-x86_64": -- Looking for getopt - found Step #3 - "compile-afl-address-x86_64": -- GUI will not be built Step #3 - "compile-afl-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #3 - "compile-afl-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #3 - "compile-afl-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #3 - "compile-afl-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": Call Stack (most recent call first): Step #3 - "compile-afl-address-x86_64": test/CMakeLists.txt:233 (include) Step #3 - "compile-afl-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.10.14") Step #3 - "compile-afl-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #3 - "compile-afl-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #3 - "compile-afl-address-x86_64": CMake. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #3 - "compile-afl-address-x86_64": CMake that the project does not need compatibility with older versions. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Configuring done (6.2s) Step #3 - "compile-afl-address-x86_64": -- Generating done (0.1s) Step #3 - "compile-afl-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #3 - "compile-afl-address-x86_64": ++ nproc Step #3 - "compile-afl-address-x86_64": + make -j 32 Step #3 - "compile-afl-address-x86_64": [ 0%] Generating atomtyp.h Step #3 - "compile-afl-address-x86_64": [ 0%] Generating bondtyp.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating phmodeldata.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating resdata.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating types.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating torlib.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating atomizationenergies.h Step #3 - "compile-afl-address-x86_64": [ 2%] Generating spacegroups.h Step #3 - "compile-afl-address-x86_64": [ 2%] Generating ringtyp.h Step #3 - "compile-afl-address-x86_64": [ 2%] Built target data_headers Step #3 - "compile-afl-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #3 - "compile-afl-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #3 - "compile-afl-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #3 - "compile-afl-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #3 - "compile-afl-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #3 - "compile-afl-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #3 - "compile-afl-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #3 - "compile-afl-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #3 - "compile-afl-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #3 - "compile-afl-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #3 - "compile-afl-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #3 - "compile-afl-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #3 - "compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #3 - "compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #3 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 82 | _ival=nullptr; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1523 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #defi/src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #3 - "compile-afl-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": ne OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1539 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1572 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 359 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1180 | rl./src/openbabel/src/builder.cpp:Set361:F26:ix Atoms(fwarning: ixe'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]d); Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": |  ^361 Step #3 - "compile-afl-address-x86_64": |   el/src/openbabel/include/openbabel/rotor.hs:e i633f: 5(:b ondnote: 2 'SetFixAtoms' has been explicitly marked deprecated here== Step #3 - "compile-afl-address-x86_64": 633V | Z e r o )OB Step #3 - "compile-afl-address-x86_64": _ D| EP ^R Step #3 - "compile-afl-address-x86_64": ECATE/src/openbabel/include/openbabel/math/vector3.hD:_273M:S5G:( "Snote: e'operator==' has been explicitly marked deprecated heree Step #3 - "compile-afl-address-x86_64": Set Fi273x | e d B on dOsB(_DE)P")RE Step #3 - "compile-afl-address-x86_64": | CA ^ Step #3 - "compile-afl-address-x86_64": TED_M/src/openbabel/build/include/openbabel/babelconfig.hS:G(38":U38s:e  note: veexpanded from macro 'OB_DEPRECATED_MSG'c Step #3 - "compile-afl-address-x86_64": 38t | o r 3 :#d:eIfsiApnper oOxB(_)D EiPnRstEeCATED_MSG(msg) [[deprecatead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38:d(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[depr/src/openbabel/src/builder.cppec:a430t:e23d:( msg)]warning: ] Step #3 - "compile-afl-address-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]|  Step #3 - "compile-afl-address-x86_64": ^ Step #3 - "compile-afl-address-x86_64": 430 |  if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 432 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG/src/openbabel/src/forcefield.cpp(m:s1301g:)8 :[ [deprwarning: ecat'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations]ed Step #3 - "compile-afl-address-x86_64": ( ms1301g | ) ] ]  Step #3 - "compile-afl-address-x86_64": r l| .S ^e Step #3 - "compile-afl-address-x86_64": tFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38/src/openbabel/src/builder.cpp:: 434:28note: : expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": warning: 38'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] |  Step #3 - "compile-afl-address-x86_64": 434# | d e f i n e O B _ D E PeRlEsCeA TiEfD _(MbSoGnd(3m s=g=) V[Z[edreop)re Step #3 - "compile-afl-address-x86_64": c a| te ^d Step #3 - "compile-afl-address-x86_64": (msg/src/openbabel/include/openbabel/math/vector3.h)]:]273: Step #3 - "compile-afl-address-x86_64": 5 :|  ^ Step #3 - "compile-afl-address-x86_64": note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 450 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 452 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 454 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:1372 | for (j = 0; j < rot38:38: note: expanded from macro 'OB_DEPRECATED_MSG'or->GetResolution().size(); j++) { // For each rotor po Step #3 - "compile-afl-address-x86_64": sit38 | ion Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATE D_M#deSG("Sfiee GetTorsionValne OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 469 | if (bues()"o) Step #3 - "compile-afl-address-x86_64": nd1 == VZero)| Step #3 - "compile-afl-address-x86_64": |  ^ ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38: Step #3 - "compile-afl-address-x86_64": 38: note: /src/openbabel/include/openbabel/math/vector3.hexpanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | :273:5 #define OB_DEPRECATED_MSG(ms: note: 'operator==' has been explicitly marked deprecated hereg) Step #3 - "compile-afl-address-x86_64": [ 273[d | epr OecB_DaEPRECATED_MSG("Use tedve(mctosgr3:)]:I]sAp Step #3 - "compile-afl-address-x86_64": pr|  ^ Step #3 - "compile-afl-address-x86_64": ox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 471 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 473 | /src/openbabel/src/forcefield.cpp else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[depre:cat1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": e 1444 | d(msg)]]  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1457 | /src/openbabel/src/builder.cpp:494:23: combinations *= rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5:  note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 494 449 | | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  if (bond1/src/openbabel/src/forcefield.cpp:1482:52 == V: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1482 | rotorKey[i] =Ze generator.NextInt() % rotor-ro) Step #3 - "compile-afl-address-x86_64": >GetR|  ^ Step #3 - "compile-afl-address-x86_64": esolution().s/src/openbabel/include/openbabel/math/vector3.h:273:5:i ze(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | note: 'operator==' has been explicitly marked deprecated hereOB_DEPRE Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() insteadCATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecate.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 496 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 498 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": d(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 514 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 516 | /src/openbabel/src/forcefield.cpp:1622:8:  else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64":  'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 5181622 | | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DrElP.RSEeCtAFTiED_MxAtSoGm(sm(sfgi)x e[d[)d;ep Step #3 - "compile-afl-address-x86_64": re c| at ^ Step #3 - "compile-afl-address-x86_64": ed/src/openbabel/include/openbabel/rotor.h(ms:g)]633]:5: Step #3 - "compile-afl-address-x86_64": note: 'SetFixAtoms' has been explicitly marked deprecated here| Step #3 - "compile-afl-address-x86_64": 633 | ^ Step #3 - "compile-afl-address-x86_64":  OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #d/src/openbabel/src/builder.cppef:i520:28:ne OB_warning: DEP'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]REC Step #3 - "compile-afl-address-x86_64": ATED520 | _ MSG (msg ) [ e[deprlsee ifc a(tbeodn(dm4s g=)=] ]VZ Step #3 - "compile-afl-address-x86_64": er o| ) ^ Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | /src/openbabel/src/forcefield.cpp :1635 :32:#de finwarning: e OB'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]_DEPR Step #3 - "compile-afl-address-x86_64": ECATE 1635 | D_MSG(msg) [ [ dceopmrbeinactaitoends( m*s=g )r]o]to Step #3 - "compile-afl-address-x86_64": r -| >G ^e Step #3 - "compile-afl-address-x86_64": tResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: /src/openbabel/src/builder.cppwarning: :533'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]:23 Step #3 - "compile-afl-address-x86_64": : 1685warning: |   'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]  Step #3 - "compile-afl-address-x86_64": fo533r | ( u n s i g n e d i nti fj (=b o0n;d 1j =<= rVoZteorro-)>G Step #3 - "compile-afl-address-x86_64": e t| Re ^s Step #3 - "compile-afl-address-x86_64": olut/src/openbabel/include/openbabel/math/vector3.h:273i:o5n:( ).snote: iz'operator==' has been explicitly marked deprecated heree( Step #3 - "compile-afl-address-x86_64": ) ; 273j | + + ) {OB Step #3 - "compile-afl-address-x86_64": _ D| EP ^R Step #3 - "compile-afl-address-x86_64": ECATE/src/openbabel/include/openbabel/rotor.hD:_449M:S5G:( "Usnote: e 'GetResolution' has been explicitly marked deprecated hereve Step #3 - "compile-afl-address-x86_64": c to449r | 3 : : IOsBA_pDpErPoRxE(C)A TiEnDs_tMeSaGd(.""S)ee Step #3 - "compile-afl-address-x86_64": G| etTorsion ^V Step #3 - "compile-afl-address-x86_64": alues/src/openbabel/build/include/openbabel/babelconfig.h(:)38":)38: Step #3 - "compile-afl-address-x86_64": | note: ^ Step #3 - "compile-afl-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:3838 | : 38 : #dnote: efexpanded from macro 'OB_DEPRECATED_MSG'in Step #3 - "compile-afl-address-x86_64": e OB38_ | D E P#RdEeCfAiTnEeD _OMBS_GD(EmPsRgE)C A[T[EdDe_pMrSeG(cmastge)d ([m[sdge)p]r]ec Step #3 - "compile-afl-address-x86_64": a t| ed ^( Step #3 - "compile-afl-address-x86_64": msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 535 | e/src/openbabel/src/forcefield.cppl:s1712e: 43i:f (bwarning: ond'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]2 Step #3 - "compile-afl-address-x86_64": = = V1712Z | e r o )  Step #3 - "compile-afl-address-x86_64": f| or ^ Step #3 - "compile-afl-address-x86_64": (unsig/src/openbabel/include/openbabel/math/vector3.hn:e273d: 5i:n t jnote: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": = 0273; | j < OrBo_tDoErP-R>EGCeAtTREeDs_oMlSuGt(i"oUns(e) .vseiczteo(r)3;: :jI+s+A) {p Step #3 - "compile-afl-address-x86_64": p r| ox ^( Step #3 - "compile-afl-address-x86_64": ) instea/src/openbabel/include/openbabel/rotor.hd:.449":)5: Step #3 - "compile-afl-address-x86_64": | note: ^ Step #3 - "compile-afl-address-x86_64": 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:44938 | : 38 : OBnote: _Dexpanded from macro 'OB_DEPRECATED_MSG'EP Step #3 - "compile-afl-address-x86_64": R ECA38T | E D _ M S#Gd(e"fSienee GOeBt_TDoErPsRiEoCnAVTaElDu_eMSG(mss(g))" )[[ Step #3 - "compile-afl-address-x86_64": d e| pr ^e Step #3 - "compile-afl-address-x86_64": cated/src/openbabel/build/include/openbabel/babelconfig.h(:38:m38s:g )]]note:  Step #3 - "compile-afl-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' | Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg)/src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 537 | else if (bond3 [=[=d eVpZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5:r ecanote: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSGted(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": ("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 539 | else if (bond4 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox()warning: instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[depr'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]ecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()"/src/openbabel/src/builder.cpp:564/src/openbabel/src/mol.cpp::232788:: 29): warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]warning:  Step #3 - "compile-afl-address-x86_64":  2788 |  i'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]f Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": 564 | ( a t o|  m - > G ^e Step #3 - "compile-afl-address-x86_64": tifV e(cto/src/openbabel/build/include/openbabel/babelconfig.hr:b(38o)n d!1= V=Z=e rVoZ)er Step #3 - "compile-afl-address-x86_64": o )|  Step #3 - "compile-afl-address-x86_64": ^ Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h/src/openbabel/include/openbabel/math/vector3.h::278273::55:: note: note: 'operator!=' has been explicitly marked deprecated here'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": 278273 | | OB_DEPRECATED_MSG("Us:e vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 3838: | note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | # d #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": efine OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:566:28:  OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 566 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.")/src/openbabel/src/mol.cpp Step #3 - "compile-afl-address-x86_64": : 2803| :23 ^: Step #3 - "compile-afl-address-x86_64": warning: /src/openbabel/build/include/openbabel/babelconfig.h:'IsNearZero' is deprecated [-Wdeprecated-declarations]38: Step #3 - "compile-afl-address-x86_64": 38 : 2803note: |  expanded from macro 'OB_DEPRECATED_MSG'  Step #3 - "compile-afl-address-x86_64": 38 | i f ( !#hdaesfXi n&e& O!BI_sDNEePaRrEZCeArToE(Da_tMoSmG-(>mxs(g))) )[[ Step #3 - "compile-afl-address-x86_64": d e| pr ^e Step #3 - "compile-afl-address-x86_64": cated(msg)]]/src/openbabel/include/openbabel/obutil.h Step #3 - "compile-afl-address-x86_64": : 197| :3 ^: Step #3 - "compile-afl-address-x86_64": note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATE/src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": D 568[ | [ d e p r e c a t e d ] ]el Step #3 - "compile-afl-address-x86_64": s e| i ^f (bond3 == VZe Step #3 - "compile-afl-address-x86_64": ro) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5/src/openbabel/src/mol.cpp:2805:23: : warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2805 | if (!hasY && !IsNearZero(note: 'operator==' has been explicitly marked deprecated hereatom->y())) Step #3 - "compile-afl-address-x86_64":  273 | OB_DEPR Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197ECATED:3: note: _MSG("U'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | se vect OB_oDEPRECArT3ED Step #3 - "compile-afl-address-x86_64": | ::IsAp ^ Step #3 - "compile-afl-address-x86_64": prox() /src/openbabel/build/include/openbabel/babelconfig.h:37:29: instead.note: expanded from macro 'OB_DEPRECATED'") Step #3 - "compile-afl-address-x86_64": | Step #3 - "compile-afl-address-x86_64": 37 |  ^ Step #3 - "compile-afl-address-x86_64":  /src/openbabel/build/include/openbabel/babelconfig.h:38 #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": :38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #de/src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations]f Step #3 - "compile-afl-address-x86_64": ine 2826 OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  | if (!hasX && !IsNearZero(atom->x())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 570 | else if (bond4 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273/src/openbabel/build/include/openbabel/babelconfig.h:37:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": : 273 | 29 :  Onote: B_expanded from macro 'OB_DEPRECATED'DE Step #3 - "compile-afl-address-x86_64": P RE37C | A T E D _#MdSeGf(i"nUes eO Bv_eDcEtPoRrE3C:A:TIEsDA p[p[rdoexp(r)e ciantsetde]a]d. Step #3 - "compile-afl-address-x86_64": " )|  Step #3 - "compile-afl-address-x86_64": ^ Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | /src/openbabel/src/mol.cpp :#2828d:e23f:i ne warning: OB_'IsNearZero' is deprecated [-Wdeprecated-declarations]DE Step #3 - "compile-afl-address-x86_64": P R2828 | E C A T E D _iMfS G((!mhsags)Y [&[&d e!pIrseNcateeadr(Zmesrgo)(]a]to Step #3 - "compile-afl-address-x86_64": m -| >y ^( Step #3 - "compile-afl-address-x86_64": ))) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2830 | if (/src/openbabel/src/builder.cpp!h:a572s:Z28 :& & !warning: IsN'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]ea Step #3 - "compile-afl-address-x86_64": r Ze572 | r o ( a t o m - > z ( )e)l)se Step #3 - "compile-afl-address-x86_64": i| f ^( Step #3 - "compile-afl-address-x86_64": bond/src/openbabel/include/openbabel/obutil.h5: 197=:=3 :V Zernote: o)'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": | 197 ^ | Step #3 - "compile-afl-address-x86_64":  OB_D/src/openbabel/include/openbabel/math/vector3.hE:P273R:E5C:A TEDnote:  Step #3 - "compile-afl-address-x86_64": 'operator==' has been explicitly marked deprecated here | Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": 273 |  /src/openbabel/build/include/openbabel/babelconfig.h : 37O:B29_:D EPRnote: ECexpanded from macro 'OB_DEPRECATED'AT Step #3 - "compile-afl-address-x86_64": E D_37M | S G ( " U#sdee fviencet oOrB3_:D:EIPsRAEpCpArToExD( )[ [idnesptreeacda.t"e)d] Step #3 - "compile-afl-address-x86_64": ] | Step #3 - "compile-afl-address-x86_64":  ^| Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2420 | if (IsNearZero(scale)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 660 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2539 | |  if (IsNear(e_n2, e_n1, 1.0e-3)) ^ Step #3 - "compile-afl-address-x86_64":  { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h/src/openbabel/include/openbabel/obutil.h:189::338:: 38: note: 'IsNear' has been explicitly marked deprecated herenote:  Step #3 - "compile-afl-address-x86_64": 189expanded from macro 'OB_DEPRECATED_MSG' | OB_DEP Step #3 - "compile-afl-address-x86_64": RE C38A | #define TED_OB_DEPRECATED_MSMGS("UGs(e IsApprox()m sgi)n s[tead")[deprecated( Step #3 - "compile-afl-address-x86_64": m s| g ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38):38:] ] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 718 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 720 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3252 | if ((*ringit)->PathSize() == 5) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:3274:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3274 | else if ((*ringit)->PathSize() == 6) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: /src/openbabel/src/mol.cpp:3343:31: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": warning: 38'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3343 | #defin | e OB_D loEPRECATED_MopSize = (*rSG(msg) ingit)[[depr->PathecatedSize()(msg)]; Step #3 - "compile-afl-address-x86_64": | ] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here ^ Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": 65 |  O/src/openbabel/src/forcefield.cpp:2725:13: B_DEPRECAwarning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2725 | if TED_MSG("Use Size() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1089 | mol.GetFirstAtom()->GetHyb()(; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": IsNear(e/src/openbabel/include/openbabel/mol.h:287:5_n2, : note: e_n1, 1.0e-7)) { Step #3 - "compile-afl-address-x86_64": |  ^'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64":  287/src/openbabel/include/openbabel/obutil.h:189:3 | : note: 'IsNear' has been explicitly marked deprecated here OB_DE Step #3 - "compile-afl-address-x86_64": PRECA189T | E ODB Step #3 - "compile-afl-address-x86_64": _| DE ^PREC Step #3 - "compile-afl-address-x86_64": ATED_MSG("/src/openbabel/build/include/openbabel/babelconfig.hU:37:s29e: IsAnote: ppexpanded from macro 'OB_DEPRECATED'rox( Step #3 - "compile-afl-address-x86_64": ) i37 | n s t ead"#)de Step #3 - "compile-afl-address-x86_64": | fin ^e O Step #3 - "compile-afl-address-x86_64": B_DEPRE/src/openbabel/build/include/openbabel/babelconfig.hC:A38:38T:E D [[dnote: epexpanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": r ec38ate | d ] ] #d Step #3 - "compile-afl-address-x86_64": e f|  ^i Step #3 - "compile-afl-address-x86_64": ne OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1427 | if (bond1 == VZero) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3735 | if (IsNearZero(length)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3802 | if (IsNearZero(length)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #3 - "compile-afl-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #3 - "compile-afl-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 452 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 443 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 355 | rotor->SetDelta(delta/src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449); Step #3 - "compile-afl-address-x86_64": | |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note:  OB_DEPR'SetDelta' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": E 428 | OB_DEPRECATED_MSG("Has no effecCATt.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": ED_/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprMSecateG("dS(eme Gseg)t]]Tor Step #3 - "compile-afl-address-x86_64": si o| nV ^a Step #3 - "compile-afl-address-x86_64": lues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 589 | gd->GetOriginVector(origin); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #3 - "compile-afl-address-x86_64": 5 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #3 - "compile-afl-address-x86_64": 34 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #3 - "compile-afl-address-x86_64": 310 | else if (vs[0][0] == '2') Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #3 - "compile-afl-address-x86_64": 51 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #3 - "compile-afl-address-x86_64": 911 | s[ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #3 - "compile-afl-address-x86_64": witch(pRD->ReactionType) Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #3 - "compile-afl-address-x86_64": 990 | switch(pRD->ReactionType) Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #3 - "compile-afl-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #3 - "compile-afl-address-x86_64": |  ~~~~ ^~~~ Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #3 - "compile-afl-address-x86_64": 9 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | gd->GetOriginVector(origin); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": 158 | switch (chirality) { Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~ Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #3 - "compile-afl-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #3 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #3 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #3 - "compile-afl-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #3 - "compile-afl-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1523 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #3 - "compile-afl-address-x86_64": 6 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #3 - "compile-afl-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~~~~~ ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #3 - "compile-afl-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #3 - "compile-afl-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 9 warnings generated. Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 4 warnings generated. Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #3 - "compile-afl-address-x86_64": [ 75%] Built target openbabel Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #3 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #3 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: /src/openbabel/test/stereoperceptiontest.cpp5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": 102:255:21: warning:  | backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 255 | switch (units.at(i ). // / \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": type) { Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 270 | // / \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 285 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 287 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 310 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60./src/openbabel/test/stereoperceptiontest.cpp0, :432:110: .0warning: )); Step #3 - "compile-afl-address-x86_64":  | backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 432 | ^ Step #3 - "compile-afl-address-x86_64":  // \/src/openbabel/include/openbabel/obutil.h :189:3  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": : note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": 132 | switch (units.at(i).type) { Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #3 - "compile-afl-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #3 - "compile-afl-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 92%] Linking CXX executable ../bin/obabel Step #3 - "compile-afl-address-x86_64": [ 92%] Linking CXX executable ../bin/fuzz_convert Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #3 - "compile-afl-address-x86_64": [ 93%] Built target fuzz_obconversion_smiles Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 94%] Built target fuzz_obconversion_sdf Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #3 - "compile-afl-address-x86_64": [ 96%] Built target roundtrip Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Built target obabel Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Built target fuzz_convert Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 190 | x = m2.Get( i, j ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant opera/src/openbabel/test/logp_psa.cppt:o95r:(7): inswarning: tead") Step #3 - "compile-afl-address-x86_64": |  ^'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": 95/src/openbabel/build/include/openbabel/babelconfig.h | : 38 :i38f: (Isnote: Neexpanded from macro 'OB_DEPRECATED_MSG'ar Step #3 - "compile-afl-address-x86_64": (logP, 382 | . 5 8 1 5#)d)e f{i n/e/ OVBa_lDuEeP RfErCoAmT EJDO_EMLSiGb(2ms Step #3 - "compile-afl-address-x86_64": g )| [ ^[ Step #3 - "compile-afl-address-x86_64": deprec/src/openbabel/include/openbabel/obutil.ha:t189e:d3(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": : note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | O/src/openbabel/test/math.cppB:_326D:E12P:R ECAwarning: TED'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations]_M Step #3 - "compile-afl-address-x86_64": SG(" U326s | e IDsiAapgpornoaxl(.)S eitn(s0t,e a0d," )ra Step #3 - "compile-afl-address-x86_64": n d| om ^i Step #3 - "compile-afl-address-x86_64": zer.N/src/openbabel/build/include/openbabel/babelconfig.he:x38t:F38l:o at(note: ))expanded from macro 'OB_DEPRECATED_MSG'; Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": | 38 | ^ Step #3 - "compile-afl-address-x86_64":  #de/src/openbabel/include/openbabel/math/matrix3x3.hf:i188n:e7 :O B_Dnote: EPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": | /src/openbabel/test/logp_psa.cpp: ^102 Step #3 - "compile-afl-address-x86_64": :7: warning: /src/openbabel/build/include/openbabel/babelconfig.h'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": : 38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #defi102n | e iOfB _(DIEsPNear(RpEsa, 0.0)) { // Value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": C/src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEATEPRECATED_MSG("Use IsAppDr_oMxS(G)( misngs)t e[a[dd"e)pr Step #3 - "compile-afl-address-x86_64": e c| a ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": ted(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations]/src/openbabel/test/logp_psa.cpp Step #3 - "compile-afl-address-x86_64": :112:7: 328 |  warning: Di'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]ag Step #3 - "compile-afl-address-x86_64": o n112a | l . if (IsNear(lSoet(2, 2, DiagongaPl.Get(1,1)+fabs,( r2a.n0do2m6izer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPREC4ATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": ) { // /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 328 | Diagonal.JOELib2 = 1.9534, Set(2, 2,m Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": ore/src/openbabel/include/openbabel/math/matrix3x3.h :H171 :adde7d on N Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG': Step #3 - "compile-afl-address-x86_64": note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define O/src/openbabel/test/logp_psa.cpp:119:7:B warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 119 | if _DEPRE(ICATED_MSG(msg)sNear(psa, 29.1)) { // Va[[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": l|  ^ Step #3 - "compile-afl-address-x86_64": ue f/src/openbabel/test/math.cpp:346:70: rwarning: om'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diago nal.Get(j,j), Diagonal.Get(2,2)J O) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": E L171i | b 2  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": OB_DEP/src/openbabel/include/openbabel/obutil.h:189R:3E:C ATEnote: D_'IsNear' has been explicitly marked deprecated hereM Step #3 - "compile-afl-address-x86_64": SG("use th 189 | OB_e Dconstant operaEPRECATtor() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: ED_MSG("Use IsApprox(note: ) expanded from macro 'OB_DEPRECATED_MSG'in Step #3 - "compile-afl-address-x86_64": stead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38 :38 |   note: #expanded from macro 'OB_DEPRECATED_MSG'de Step #3 - "compile-afl-address-x86_64": fi n38e | OB_ #define DEPORBE_CDEPRECATED_MSG(AmTsEgD)_ M[S[Gd(empsrg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": e c| a ^ Step #3 - "compile-afl-address-x86_64": ted(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 6 warnings generated. Step #3 - "compile-afl-address-x86_64": 6 warnings generated. Step #3 - "compile-afl-address-x86_64": 17 warnings generated. Step #3 - "compile-afl-address-x86_64": 24 warnings generated. Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #3 - "compile-afl-address-x86_64": [100%] Built target test_runner Step #3 - "compile-afl-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/afl-address-x86_64/ Finished Step #3 - "compile-afl-address-x86_64" Starting Step #4 - "build-check-afl-address-x86_64" Step #4 - "build-check-afl-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #4 - "build-check-afl-address-x86_64": Unable to find image 'gcr.io/oss-fuzz-base/base-runner:latest' locally Step #4 - "build-check-afl-address-x86_64": latest: Pulling from oss-fuzz-base/base-runner Step #4 - "build-check-afl-address-x86_64": b549f31133a9: Already exists Step #4 - "build-check-afl-address-x86_64": dd0bbb17640b: Already exists Step #4 - "build-check-afl-address-x86_64": 62275a527176: Already exists Step #4 - "build-check-afl-address-x86_64": 5fd16084d27b: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 3b4a256e94e2: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 1193775e083f: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": f727a9982adf: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": f8d818a221e1: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": b9c799c7d67c: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 2591e08b7318: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": bce2b20ed137: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": aa6e1a4c641d: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": b2d84ef78605: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 51141030c98b: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 1352417c166b: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 3e559a118ced: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 5ee64ebc3e2d: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": b8fbef88b43f: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": bca5011b5d98: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 4e6d480500bd: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 5bf153eb29f2: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": e5dd31db85a2: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 1dc362db725d: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 323475a2805d: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 9746f385c510: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 0bf176c5c5f0: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": bce2b20ed137: Waiting Step #4 - "build-check-afl-address-x86_64": b8fbef88b43f: Waiting Step #4 - "build-check-afl-address-x86_64": aa6e1a4c641d: Waiting Step #4 - "build-check-afl-address-x86_64": bca5011b5d98: Waiting Step #4 - "build-check-afl-address-x86_64": b2d84ef78605: Waiting Step #4 - "build-check-afl-address-x86_64": 323475a2805d: Waiting Step #4 - "build-check-afl-address-x86_64": 51141030c98b: Waiting Step #4 - "build-check-afl-address-x86_64": f727a9982adf: Waiting Step #4 - "build-check-afl-address-x86_64": 9746f385c510: Waiting Step #4 - "build-check-afl-address-x86_64": f8d818a221e1: Waiting Step #4 - "build-check-afl-address-x86_64": 1352417c166b: Waiting Step #4 - "build-check-afl-address-x86_64": 3e559a118ced: Waiting Step #4 - "build-check-afl-address-x86_64": b9c799c7d67c: Waiting Step #4 - "build-check-afl-address-x86_64": 0bf176c5c5f0: Waiting Step #4 - "build-check-afl-address-x86_64": 4e6d480500bd: Waiting Step #4 - "build-check-afl-address-x86_64": 5ee64ebc3e2d: Waiting Step #4 - "build-check-afl-address-x86_64": 2591e08b7318: Waiting Step #4 - "build-check-afl-address-x86_64": 1dc362db725d: Waiting Step #4 - "build-check-afl-address-x86_64": e5dd31db85a2: Waiting Step #4 - "build-check-afl-address-x86_64": 1193775e083f: Download complete Step #4 - "build-check-afl-address-x86_64": 5fd16084d27b: Download complete Step #4 - "build-check-afl-address-x86_64": 3b4a256e94e2: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 3b4a256e94e2: Download complete Step #4 - "build-check-afl-address-x86_64": f8d818a221e1: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": f8d818a221e1: Download complete Step #4 - "build-check-afl-address-x86_64": f727a9982adf: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": f727a9982adf: Download complete Step #4 - "build-check-afl-address-x86_64": 5fd16084d27b: Pull complete Step #4 - "build-check-afl-address-x86_64": 2591e08b7318: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 2591e08b7318: Download complete Step #4 - "build-check-afl-address-x86_64": bce2b20ed137: Download complete Step #4 - "build-check-afl-address-x86_64": aa6e1a4c641d: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": aa6e1a4c641d: Download complete Step #4 - "build-check-afl-address-x86_64": 3b4a256e94e2: Pull complete Step #4 - "build-check-afl-address-x86_64": 51141030c98b: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 51141030c98b: Download complete Step #4 - "build-check-afl-address-x86_64": b9c799c7d67c: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": b9c799c7d67c: Download complete Step #4 - "build-check-afl-address-x86_64": 1352417c166b: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 1352417c166b: Download complete Step #4 - "build-check-afl-address-x86_64": 1193775e083f: Pull complete Step #4 - "build-check-afl-address-x86_64": 3e559a118ced: Download complete Step #4 - "build-check-afl-address-x86_64": b8fbef88b43f: Download complete Step #4 - "build-check-afl-address-x86_64": f727a9982adf: Pull complete Step #4 - "build-check-afl-address-x86_64": b2d84ef78605: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": b2d84ef78605: Download complete Step #4 - "build-check-afl-address-x86_64": 5ee64ebc3e2d: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 5ee64ebc3e2d: Download complete Step #4 - "build-check-afl-address-x86_64": f8d818a221e1: Pull complete Step #4 - "build-check-afl-address-x86_64": 4e6d480500bd: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 4e6d480500bd: Download complete Step #4 - "build-check-afl-address-x86_64": 5bf153eb29f2: Download complete Step #4 - "build-check-afl-address-x86_64": e5dd31db85a2: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": e5dd31db85a2: Download complete Step #4 - "build-check-afl-address-x86_64": 1dc362db725d: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 1dc362db725d: Download complete Step #4 - "build-check-afl-address-x86_64": 323475a2805d: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 323475a2805d: Download complete Step #4 - "build-check-afl-address-x86_64": 9746f385c510: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 9746f385c510: Download complete Step #4 - "build-check-afl-address-x86_64": 0bf176c5c5f0: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 0bf176c5c5f0: Download complete Step #4 - "build-check-afl-address-x86_64": bca5011b5d98: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": bca5011b5d98: Download complete Step #4 - "build-check-afl-address-x86_64": b9c799c7d67c: Pull complete Step #4 - "build-check-afl-address-x86_64": 2591e08b7318: Pull complete Step #4 - "build-check-afl-address-x86_64": bce2b20ed137: Pull complete Step #4 - "build-check-afl-address-x86_64": aa6e1a4c641d: Pull complete Step #4 - "build-check-afl-address-x86_64": b2d84ef78605: Pull complete Step #4 - "build-check-afl-address-x86_64": 51141030c98b: Pull complete Step #4 - "build-check-afl-address-x86_64": 1352417c166b: Pull complete Step #4 - "build-check-afl-address-x86_64": 3e559a118ced: Pull complete Step #4 - "build-check-afl-address-x86_64": 5ee64ebc3e2d: Pull complete Step #4 - "build-check-afl-address-x86_64": b8fbef88b43f: Pull complete Step #4 - "build-check-afl-address-x86_64": bca5011b5d98: Pull complete Step #4 - "build-check-afl-address-x86_64": 4e6d480500bd: Pull complete Step #4 - "build-check-afl-address-x86_64": 5bf153eb29f2: Pull complete Step #4 - "build-check-afl-address-x86_64": e5dd31db85a2: Pull complete Step #4 - "build-check-afl-address-x86_64": 1dc362db725d: Pull complete Step #4 - "build-check-afl-address-x86_64": 323475a2805d: Pull complete Step #4 - "build-check-afl-address-x86_64": 9746f385c510: Pull complete Step #4 - "build-check-afl-address-x86_64": 0bf176c5c5f0: Pull complete Step #4 - "build-check-afl-address-x86_64": Digest: sha256:0f990cc1311f94fde83d4a8a4c39464ca2bb422b54915be66a43e132a6eab309 Step #4 - "build-check-afl-address-x86_64": Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-runner:latest Step #4 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpr8tjieo9/fuzz_obconversion_sdf Step #4 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpr8tjieo9/fuzz_obconversion_smiles Step #4 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpr8tjieo9/fuzz_convert Finished Step #4 - "build-check-afl-address-x86_64" Starting Step #5 Step #5: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #5 Starting Step #6 Step #6: Already have image: gcr.io/oss-fuzz/openbabel Step #6: adding: SanitizerCoverageLTO.so (deflated 70%) Step #6: adding: SanitizerCoveragePCGUARD.so (deflated 70%) Step #6: adding: afl-addseeds (deflated 56%) Step #6: adding: afl-analyze (deflated 54%) Step #6: adding: afl-as (deflated 63%) Step #6: adding: afl-c++ (deflated 57%) Step #6: adding: afl-c++.8 (deflated 56%) Step #6: adding: afl-cc (deflated 57%) Step #6: adding: afl-cc.8 (deflated 56%) Step #6: adding: afl-clang (deflated 57%) Step #6: adding: afl-clang++ (deflated 57%) Step #6: adding: afl-clang-fast (deflated 57%) Step #6: adding: afl-clang-fast++ (deflated 57%) Step #6: adding: afl-clang-fast++.8 (deflated 56%) Step #6: adding: afl-clang-fast.8 (deflated 56%) Step #6: adding: afl-clang-lto (deflated 57%) Step #6: adding: afl-clang-lto++ (deflated 57%) Step #6: adding: afl-clang-lto++.8 (deflated 56%) Step #6: adding: afl-clang-lto.8 (deflated 56%) Step #6: adding: afl-cmin (deflated 70%) Step #6: adding: afl-cmin.bash (deflated 65%) Step #6: adding: afl-compiler-rt-32.o (deflated 56%) Step #6: adding: afl-compiler-rt-64.o (deflated 67%) Step #6: adding: afl-compiler-rt.o (deflated 67%) Step #6: adding: afl-fuzz (deflated 55%) Step #6: adding: afl-g++ (deflated 57%) Step #6: adding: afl-gcc (deflated 57%) Step #6: adding: afl-gotcpu (deflated 61%) Step #6: adding: afl-ld-lto (deflated 63%) Step #6: adding: afl-llvm-dict2file.so (deflated 69%) Step #6: adding: afl-llvm-lto-instrumentlist.so (deflated 70%) Step #6: adding: afl-llvm-pass.so (deflated 68%) Step #6: adding: afl-llvm-rt-lto-32.o (deflated 21%) Step #6: adding: afl-llvm-rt-lto-64.o (deflated 20%) Step #6: adding: afl-llvm-rt-lto.o (deflated 20%) Step #6: adding: afl-lto (deflated 57%) Step #6: adding: afl-lto++ (deflated 57%) Step #6: adding: afl-lto++.8 (deflated 56%) Step #6: adding: afl-lto.8 (deflated 56%) Step #6: adding: afl-persistent-config (deflated 60%) Step #6: adding: afl-plot (deflated 65%) Step #6: adding: afl-showmap (deflated 55%) Step #6: adding: afl-system-config (deflated 63%) Step #6: adding: afl-tmin (deflated 54%) Step #6: adding: afl-whatsup (deflated 69%) Step #6: adding: afl-wine-trace (deflated 70%) Step #6: adding: afl_options.txt (deflated 20%) Step #6: adding: cmplog-instructions-pass.so (deflated 69%) Step #6: adding: cmplog-routines-pass.so (deflated 70%) Step #6: adding: cmplog-switches-pass.so (deflated 69%) Step #6: adding: compare-transform-pass.so (deflated 69%) Step #6: adding: dynamic_list.txt (deflated 76%) Step #6: adding: fuzz_convert (deflated 66%) Step #6: adding: fuzz_obconversion_sdf (deflated 66%) Step #6: adding: fuzz_obconversion_smiles (deflated 66%) Step #6: adding: libAFLDriver.a (deflated 64%) Step #6: adding: libAFLQemuDriver.a (deflated 64%) Step #6: adding: llvm-symbolizer (deflated 66%) Step #6: adding: split-compares-pass.so (deflated 68%) Step #6: adding: split-switches-pass.so (deflated 69%) Finished Step #6 Starting Step #7 Step #7: Pulling image: gcr.io/oss-fuzz-base/uploader Step #7: Using default tag: latest Step #7: latest: Pulling from oss-fuzz-base/uploader Step #7: c62795f78da9: Pulling fs layer Step #7: d4fceeeb758e: Pulling fs layer Step #7: 5c9125a401ae: Pulling fs layer Step #7: 0062f774e994: Pulling fs layer Step #7: 6b33fd031fac: Pulling fs layer Step #7: 7eb39101e508: Pulling fs layer Step #7: 89257482f398: Pulling fs layer Step #7: 0062f774e994: Waiting Step #7: 6b33fd031fac: Waiting Step #7: 7eb39101e508: Waiting Step #7: 89257482f398: Waiting Step #7: d4fceeeb758e: Download complete Step #7: 5c9125a401ae: Verifying Checksum Step #7: 5c9125a401ae: Download complete Step #7: 0062f774e994: Verifying Checksum Step #7: 0062f774e994: Download complete Step #7: 6b33fd031fac: Verifying Checksum Step #7: 6b33fd031fac: Download complete Step #7: 89257482f398: Verifying Checksum Step #7: 89257482f398: Download complete Step #7: c62795f78da9: Verifying Checksum Step #7: c62795f78da9: Download complete Step #7: 7eb39101e508: Verifying Checksum Step #7: 7eb39101e508: Download complete Step #7: c62795f78da9: Pull complete Step #7: d4fceeeb758e: Pull complete Step #7: 5c9125a401ae: Pull complete Step #7: 0062f774e994: Pull complete Step #7: 6b33fd031fac: Pull complete Step #7: 7eb39101e508: Pull complete Step #7: 89257482f398: Pull complete Step #7: Digest: sha256:5717ba63d13b5515063e2a6ccad09fb5bf32a86c8e0798a363d81c2be522e411 Step #7: Status: Downloaded newer image for gcr.io/oss-fuzz-base/uploader:latest Step #7: gcr.io/oss-fuzz-base/uploader:latest Step #7: % Total % Received % Xferd Average Speed Time Time Time Current Step #7: Dload Upload Total Spent Left Speed Step #7: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 827 --:--:-- --:--:-- --:--:-- 829 Finished Step #7 Starting Step #8 Step #8: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #8: % Total % Received % Xferd Average Speed Time Time Time Current Step #8: Dload Upload Total Spent Left Speed Step #8: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 8 90.2M 0 0 8 7536k 0 69.6M 0:00:01 --:--:-- 0:00:01 69.4M 100 90.2M 0 0 100 90.2M 0 127M --:--:-- --:--:-- --:--:-- 127M Finished Step #8 Starting Step #9 Step #9: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #9: % Total % Received % Xferd Average Speed Time Time Time Current Step #9: Dload Upload Total Spent Left Speed Step #9: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 233 --:--:-- --:--:-- --:--:-- 233 Finished Step #9 Starting Step #10 Step #10: Already have image (with digest): gcr.io/cloud-builders/curl Step #10: % Total % Received % Xferd Average Speed Time Time Time Current Step #10: Dload Upload Total Spent Left Speed Step #10: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 153 --:--:-- --:--:-- --:--:-- 153 Finished Step #10 Starting Step #11 Step #11: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #11 Starting Step #12 - "compile-honggfuzz-address-x86_64" Step #12 - "compile-honggfuzz-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": vm.mmap_rnd_bits = 28 Step #12 - "compile-honggfuzz-address-x86_64": Skipping compilation; using precompiled honggfuzz Step #12 - "compile-honggfuzz-address-x86_64": done. Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": CC=clang Step #12 - "compile-honggfuzz-address-x86_64": CXX=clang++ Step #12 - "compile-honggfuzz-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp Step #12 - "compile-honggfuzz-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp -stdlib=libc++ Step #12 - "compile-honggfuzz-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": + mkdir build Step #12 - "compile-honggfuzz-address-x86_64": + cd build Step #12 - "compile-honggfuzz-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #12 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #12 - "compile-honggfuzz-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #12 - "compile-honggfuzz-address-x86_64": CMake. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #12 - "compile-honggfuzz-address-x86_64": CMake that the project does not need compatibility with older versions. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- The C compiler identification is Clang 18.1.8 Step #12 - "compile-honggfuzz-address-x86_64": -- The CXX compiler identification is Clang 18.1.8 Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compiler ABI info Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compiler ABI info - done Step #12 - "compile-honggfuzz-address-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compile features Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compile features - done Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compiler ABI info Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compiler ABI info - done Step #12 - "compile-honggfuzz-address-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compile features Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compile features - done Step #12 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #12 - "compile-honggfuzz-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #12 - "compile-honggfuzz-address-x86_64": of CMake. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #12 - "compile-honggfuzz-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #12 - "compile-honggfuzz-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #12 - "compile-honggfuzz-address-x86_64": behavior and not rely on setting a policy to OLD. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Using included inchi library. Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #12 - "compile-honggfuzz-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #12 - "compile-honggfuzz-address-x86_64": libxml2 not found - disabling CML support! Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for conio.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for conio.h - not found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/time.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/time.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for time.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for time.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strings.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strings.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for regex.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for regex.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for C++ include sstream Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for C++ include sstream - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for rint Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for rint - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for snprintf Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for snprintf - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sranddev Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sranddev - not found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strcasecmp Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strcasecmp - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strncasecmp Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strncasecmp - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for xdrstdio_create Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for xdrstdio_create - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for dlopen in dl Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for dlopen in dl - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/types.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/types.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stdint.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stdint.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stddef.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stddef.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Check size of clock_t Step #12 - "compile-honggfuzz-address-x86_64": -- Check size of clock_t - done Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #12 - "compile-honggfuzz-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #12 - "compile-honggfuzz-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #12 - "compile-honggfuzz-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #12 - "compile-honggfuzz-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #12 - "compile-honggfuzz-address-x86_64": -- Found Threads: TRUE Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for getopt Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for getopt - found Step #12 - "compile-honggfuzz-address-x86_64": -- GUI will not be built Step #12 - "compile-honggfuzz-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #12 - "compile-honggfuzz-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #12 - "compile-honggfuzz-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #12 - "compile-honggfuzz-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": Call Stack (most recent call first): Step #12 - "compile-honggfuzz-address-x86_64": test/CMakeLists.txt:233 (include) Step #12 - "compile-honggfuzz-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.10.14") Step #12 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #12 - "compile-honggfuzz-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #12 - "compile-honggfuzz-address-x86_64": CMake. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #12 - "compile-honggfuzz-address-x86_64": CMake that the project does not need compatibility with older versions. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Configuring done (6.3s) Step #12 - "compile-honggfuzz-address-x86_64": -- Generating done (0.1s) Step #12 - "compile-honggfuzz-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #12 - "compile-honggfuzz-address-x86_64": ++ nproc Step #12 - "compile-honggfuzz-address-x86_64": + make -j 32 Step #12 - "compile-honggfuzz-address-x86_64": [ 0%] Generating atomtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 0%] Generating bondtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating phmodeldata.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating resdata.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating torlib.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating types.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating atomizationenergies.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Generating spacegroups.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Generating ringtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Built target data_headers Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 82 | _ival=nullptr; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1523 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1539 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #12 - "compile-honggfuzz-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (/src/openbabel/src/forcefield.cpp:518:33: bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1572 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 359 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 361 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 430 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 432 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 434 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1180 | /src/openbabel/src/builder.cpp : 450:23: warning:  'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]rl Step #12 - "compile-honggfuzz-address-x86_64": .Set F450i | x At o if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^m Step #12 - "compile-honggfuzz-address-x86_64": s(f/src/openbabel/include/openbabel/math/vector3.h:273:5: ixnote: e'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vectord); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | /src/openbabel/include/openbabel/rotor.h #:633:5: definote: ne O'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 633 | B_DEPRECA OTEB_DD_MSG(msg) [[depreEcaPREted(CmsgAT)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": ED_MSG("See SetFixedBonds/src/openbabel/src/builder.cpp:()452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 452 | " ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h: else38 :38if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: : 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::Isnote: expanded from macro 'OB_DEPRECATED_MSG'Ap Step #12 - "compile-honggfuzz-address-x86_64": pr ox() ins38tead.") |  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  /src/openbabel/build/include/openbabel/babelconfig.h : 38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #d#efine OB_DEPRdEeCfATED_MSG(msg) [[depinrecaet ed(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED_MSG(msg) /src/openbabel/src/builder.cpp:454:28: warning: ['operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 454[deprecated(ms | eglse if (bon)d3]] == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_D Step #12 - "compile-honggfuzz-address-x86_64": EPRECATED_MSG(msg) [[dep r| ec ^ated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1193 | combina/src/openbabel/src/builder.cppt:ions *=469:23: rotowarning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]r Step #12 - "compile-honggfuzz-address-x86_64": - 469 | > iGetRf (bond1 =e= VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": s o273l | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38u:ti note: expanded from macro 'OB_DEPRECATED_MSG'on Step #12 - "compile-honggfuzz-address-x86_64": 38 | ( ) .#sdieze();f Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": i/src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | n OBe_D OB_EPDERPREECACATETED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": D_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": | /src/openbabel/src/builder.cpp:471:28:  ^ Step #12 - "compile-honggfuzz-address-x86_64": warning: /src/openbabel/build/include/openbabel/babelconfig.h:38:38: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]note:  Step #12 - "compile-honggfuzz-address-x86_64": 471 | else if expanded from macro 'OB_DEPRECATED_MSG'(b Step #12 - "compile-honggfuzz-address-x86_64": ond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_M/src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 473 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": SG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1213 | /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 494 | r otor Ke ys .A ifdd (Rbootnd1 == oVr(rZotor->Getero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5:Res note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECAolution(TED_MSG("Use vector3::IsApprox().size()); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": )/src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here ins Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": tead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 496 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64":  633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38:/src/openbabel/include/openbabel/math/vector3.h: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 498 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 514 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38/src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": 38 1372 | | #de fine OB_DEPR for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": E/src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": CATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 516 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 518 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 520 | /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": else if (bond4 == VZero) 1457 |  Step #12 - "compile-honggfuzz-address-x86_64": combinations *= rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": | 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64":  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.")/src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38 :38: 1482 | note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 533 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MS rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1635 | combinations *= rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 535 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 537 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 539 | else if (bond4 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 564 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 566 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: G(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1685 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 568 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 570 | else if (bond4 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 572 | else if (bond5 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 660 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 718 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 720 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2420 | if (IsNearZero(scale)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 287/src/openbabel/src/forcefield.cpp | :2657:11 :  warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]  Step #12 - "compile-honggfuzz-address-x86_64": 2657 | O B if _(IsNDear(Ee_n2P, e_Rn1, E1.0eC-7))A { Step #12 - "compile-honggfuzz-address-x86_64": T |  ^E Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: Dnote: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": 189 | | OB_DEPRE ^CATE Step #12 - "compile-honggfuzz-address-x86_64": D_MSG("Us/src/openbabel/build/include/openbabel/babelconfig.h:37:29:e Is Approx() insnote: tead") Step #12 - "compile-honggfuzz-address-x86_64": expanded from macro 'OB_DEPRECATED' |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38 Step #12 - "compile-honggfuzz-address-x86_64": :38: 37note: expanded from macro 'OB_DEPRECATED_MSG' |  Step #12 - "compile-honggfuzz-address-x86_64": 38 | # defi ne O B_DE#PRECdATEDe_MSGf(msgi) [[ndepreecat ed(mOsg)]B] Step #12 - "compile-honggfuzz-address-x86_64": _|  ^ Step #12 - "compile-honggfuzz-address-x86_64": DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2788 | if (atom->GetVector() != VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRE/src/openbabel/src/forcefield.cpp:3719:9: CATED [[dwarning: 'IsNearZero' is deprecated [-Wdeprecated-declarations]eprecated Step #12 - "compile-honggfuzz-address-x86_64": ]] 3719 | i Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": f (IsNearZ/src/openbabel/src/builder.cpp:1427:17: erowarning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1427 | if (bond1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": (l_ij) || IsNearZero(l_jk/src/openbabel/src/mol.cpp:2805)) { Step #12 - "compile-honggfuzz-address-x86_64": :|  ^ Step #12 - "compile-honggfuzz-address-x86_64": 23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2805 | /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_D EPRECATED Step #12 - "compile-honggfuzz-address-x86_64": | if (!hasY & ^& !Is Step #12 - "compile-honggfuzz-address-x86_64": Ne/src/openbabel/build/include/openbabel/babelconfig.h:arZero(atom->y())37:29: ) Step #12 - "compile-honggfuzz-address-x86_64": note: | expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 |  ^ Step #12 - "compile-honggfuzz-address-x86_64": #/src/openbabel/include/openbabel/obutil.h:197:3:define OB_ note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": | DE ^ Step #12 - "compile-honggfuzz-address-x86_64": PRE/src/openbabel/build/include/openbabel/babelconfig.h:37:29: CATED [[deprnote: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | ecat #defied]]n Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": e OB_DEP/src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": RE3719 | ifCATED [ (IsN[deprecaearZero(ted]]l Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": _ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37/src/openbabel/src/mol.cpp:2826:23: :29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 |  warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRE 2826 | CATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  if (!hasX && !IsNearZero(/src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3735 | atoimf- >(IsNearZxero(length)) { Step #12 - "compile-honggfuzz-address-x86_64": | ())) Step #12 - "compile-honggfuzz-address-x86_64": ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29:  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_D 37EPRECAT | #dED Step #12 - "compile-honggfuzz-address-x86_64": efine OB_D|  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:EPRECATED [[deprec29ated]]: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2828 | /src/openbabel/src/forcefield.cpp:3789:9 if (!ha: warning: sY && !'IsNearZero' is deprecated [-Wdeprecated-declarations]I Step #12 - "compile-honggfuzz-address-x86_64": 3789 | if sNearZe(IsNearro(atom->y())) Step #12 - "compile-honggfuzz-address-x86_64": Ze|  ^ Step #12 - "compile-honggfuzz-address-x86_64": r/src/openbabel/include/openbabel/obutil.h:197:3:o(l_ij) || IsNearZ note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": ero(l197 | OB_DE_jk))P { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: RECATEDnote: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | O Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": B/src/openbabel/build/include/openbabel/babelconfig.h_:37:29: DEPRECATEDnote: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": 37 |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | # | define OB_DEPRE#defCATEine OB_D [[de[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": prDEecated]]PRECATE Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": D [[/src/openbabel/src/forcefield.cpp:3789:29: warning: deprecate'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": d 3789 | if (IsNe]]arZero Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": (l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3:  2830note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_ | DEPRECA if (!hTED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": a s37Z | && !IsNearZero(atom #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": ->z())) Step #12 - "compile-honggfuzz-address-x86_64": |  ^/src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3802 | if (IsNearZero(length)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3252 | if ((*ringit)->PathSize() == 5) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:3274:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3274 | else if ((*ringit)->PathSize() == 6) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 452 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 443 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 355 | rotor->SetDelta(delta); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 34 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 5 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 589 | gd->GetOriginVector(origin); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #12 - "compile-honggfuzz-address-x86_64": 310 | else if (vs[0][0] == '2') Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 51 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 911 | switch(pRD->ReactionType) Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 990 | switch(pRD->ReactionType) Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": 9 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #12 - "compile-honggfuzz-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~ ^~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | gd->GetOriginVector(origin); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 158 | switch (chirality) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated[ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": . Step #12 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #12 - "compile-honggfuzz-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #12 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #12 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #12 - "compile-honggfuzz-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #12 - "compile-honggfuzz-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^/src/openbabel/src/forcefields/forcefieldgaff.cpp: Step #12 - "compile-honggfuzz-address-x86_64": 441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1523 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 9 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #12 - "compile-honggfuzz-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~~~~~ ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #12 - "compile-honggfuzz-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 4 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #12 - "compile-honggfuzz-address-x86_64": [ 75%] Built target openbabel Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 102 | switch (units.at(i).type) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 132 | /src/openbabel/test/stereoperceptiontest.cpp:255 :21s:witch warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 255 | (uni t/s./ at / ( i).typ \e ) {  Step #12 - "compile-honggfuzz-address-x86_64":  | Step #12 - "compile-honggfuzz-address-x86_64":  ^~~~~~~~~~~~~~~~| Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 270 |  // //src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() ins tead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #d \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": efine OB_DEPRECATED_MSG(msg) [[deprecated(msg/src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 285 | // \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 287 | // \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": )]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #12 - "compile-honggfuzz-address-x86_64":  /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 310 | // |  ^ Step #12 - "compile-honggfuzz-address-x86_64": \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 432 | // \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Linking CXX executable ../bin/obabel Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Built target fuzz_obconversion_sdf Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Built target fuzz_obconversion_smiles Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Built target roundtrip Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Built target obabel Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Built target fuzz_convert Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 190 | x = m2.Get( i, j ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 17 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 24 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #12 - "compile-honggfuzz-address-x86_64": [100%] Built target test_runner Step #12 - "compile-honggfuzz-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/honggfuzz-address-x86_64/ Finished Step #12 - "compile-honggfuzz-address-x86_64" Starting Step #13 - "build-check-honggfuzz-address-x86_64" Step #13 - "build-check-honggfuzz-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #13 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp7phlmt2n/fuzz_obconversion_sdf Step #13 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp7phlmt2n/fuzz_obconversion_smiles Step #13 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp7phlmt2n/fuzz_convert Finished Step #13 - "build-check-honggfuzz-address-x86_64" Starting Step #14 Step #14: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #14 Starting Step #15 Step #15: Already have image: gcr.io/oss-fuzz/openbabel Step #15: adding: fuzz_convert (deflated 66%) Step #15: adding: fuzz_obconversion_sdf (deflated 66%) Step #15: adding: fuzz_obconversion_smiles (deflated 66%) Step #15: adding: honggfuzz (deflated 66%) Step #15: adding: llvm-symbolizer (deflated 66%) Finished Step #15 Starting Step #16 Step #16: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #16: % Total % Received % Xferd Average Speed Time Time Time Current Step #16: Dload Upload Total Spent Left Speed Step #16: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 789 --:--:-- --:--:-- --:--:-- 792 Finished Step #16 Starting Step #17 Step #17: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #17: % Total % Received % Xferd Average Speed Time Time Time Current Step #17: Dload Upload Total Spent Left Speed Step #17: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 40.3M 0 0 100 40.3M 0 71.1M --:--:-- --:--:-- --:--:-- 71.2M Finished Step #17 Starting Step #18 Step #18: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #18: % Total % Received % Xferd Average Speed Time Time Time Current Step #18: Dload Upload Total Spent Left Speed Step #18: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 237 --:--:-- --:--:-- --:--:-- 238 Finished Step #18 Starting Step #19 Step #19: Already have image (with digest): gcr.io/cloud-builders/curl Step #19: % Total % Received % Xferd Average Speed Time Time Time Current Step #19: Dload Upload Total Spent Left Speed Step #19: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 160 --:--:-- --:--:-- --:--:-- 160 Finished Step #19 Starting Step #20 Step #20: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #20 Starting Step #21 - "compile-libfuzzer-address-x86_64" Step #21 - "compile-libfuzzer-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": vm.mmap_rnd_bits = 28 Step #21 - "compile-libfuzzer-address-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": CC=clang Step #21 - "compile-libfuzzer-address-x86_64": CXX=clang++ Step #21 - "compile-libfuzzer-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link Step #21 - "compile-libfuzzer-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link -stdlib=libc++ Step #21 - "compile-libfuzzer-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": + mkdir build Step #21 - "compile-libfuzzer-address-x86_64": + cd build Step #21 - "compile-libfuzzer-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #21 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #21 - "compile-libfuzzer-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #21 - "compile-libfuzzer-address-x86_64": CMake. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #21 - "compile-libfuzzer-address-x86_64": CMake that the project does not need compatibility with older versions. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- The C compiler identification is Clang 18.1.8 Step #21 - "compile-libfuzzer-address-x86_64": -- The CXX compiler identification is Clang 18.1.8 Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compiler ABI info Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compiler ABI info - done Step #21 - "compile-libfuzzer-address-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compile features Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compile features - done Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compiler ABI info Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compiler ABI info - done Step #21 - "compile-libfuzzer-address-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compile features Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compile features - done Step #21 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #21 - "compile-libfuzzer-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #21 - "compile-libfuzzer-address-x86_64": of CMake. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #21 - "compile-libfuzzer-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #21 - "compile-libfuzzer-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #21 - "compile-libfuzzer-address-x86_64": behavior and not rely on setting a policy to OLD. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Using included inchi library. Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #21 - "compile-libfuzzer-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #21 - "compile-libfuzzer-address-x86_64": libxml2 not found - disabling CML support! Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for conio.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for conio.h - not found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/time.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/time.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for time.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for time.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strings.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strings.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for regex.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for regex.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for C++ include sstream Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for C++ include sstream - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for rint Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for rint - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for snprintf Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for snprintf - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sranddev Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sranddev - not found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strcasecmp Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strcasecmp - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strncasecmp Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strncasecmp - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for xdrstdio_create Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for xdrstdio_create - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for dlopen in dl Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for dlopen in dl - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/types.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/types.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stdint.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stdint.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stddef.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stddef.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Check size of clock_t Step #21 - "compile-libfuzzer-address-x86_64": -- Check size of clock_t - done Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #21 - "compile-libfuzzer-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #21 - "compile-libfuzzer-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #21 - "compile-libfuzzer-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #21 - "compile-libfuzzer-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #21 - "compile-libfuzzer-address-x86_64": -- Found Threads: TRUE Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for getopt Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for getopt - found Step #21 - "compile-libfuzzer-address-x86_64": -- GUI will not be built Step #21 - "compile-libfuzzer-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #21 - "compile-libfuzzer-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #21 - "compile-libfuzzer-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #21 - "compile-libfuzzer-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": Call Stack (most recent call first): Step #21 - "compile-libfuzzer-address-x86_64": test/CMakeLists.txt:233 (include) Step #21 - "compile-libfuzzer-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.10.14") Step #21 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #21 - "compile-libfuzzer-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #21 - "compile-libfuzzer-address-x86_64": CMake. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #21 - "compile-libfuzzer-address-x86_64": CMake that the project does not need compatibility with older versions. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Configuring done (6.1s) Step #21 - "compile-libfuzzer-address-x86_64": -- Generating done (0.1s) Step #21 - "compile-libfuzzer-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #21 - "compile-libfuzzer-address-x86_64": ++ nproc Step #21 - "compile-libfuzzer-address-x86_64": + make -j 32 Step #21 - "compile-libfuzzer-address-x86_64": [ 0%] Generating atomtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 0%] Generating bondtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating phmodeldata.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating resdata.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating atomizationenergies.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating torlib.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating types.h Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Generating spacegroups.h Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Generating ringtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Built target data_headers Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 82 | _ival=nullptr; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #21 - "compile-libfuzzer-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 1523 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 1539 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 1572 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetT/src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": o/src/openbabel/include/openbabel/math/vector3.h:rs273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() insitead.o") Step #21 - "compile-libfuzzer-address-x86_64": nV|  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATEaD_MSG(msg) l[[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": ues(/src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 310 | ) if (bond2 == VZero || v1 == V"Ze)ro) { Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:| 273:5: note: ^'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]/src/openbabel/build/include/openbabel/babelconfig.h Step #21 - "compile-libfuzzer-address-x86_64": | :38:38 ^ Step #21 - "compile-libfuzzer-address-x86_64": : note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38/src/openbabel/src/builder.cpp:359::38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_D21EP: warning: RECATED_MSG(ms'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]g Step #21 - "compile-libfuzzer-address-x86_64": 359) | [ [deprecate d(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_D/src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1301E | rl.PSetFixAtomRs(fixed); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.hEC:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": A/src/openbabel/build/include/openbabel/babelconfig.hTED_MSG(msg) [[dep:re38:ca38ted(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": : note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]/src/openbabel/src/builder.cpp:361:26:  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 361 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 430 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 432 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 434 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 450 | /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1372 | for (j = 0; j < rotor->Ge if (botResolutnd1 == ion().siVZero) Step #21 - "compile-libfuzzer-address-x86_64": ze(); j+ |  ^ Step #21 - "compile-libfuzzer-address-x86_64": +/src/openbabel/include/openbabel/math/vector3.h:273:5:) { // F note: 'operator==' has been explicitly marked deprecated hereor each Step #21 - "compile-libfuzzer-address-x86_64": 273rotor po | OB_DsitionEPR Step #21 - "compile-libfuzzer-address-x86_64": | ECATED_MS ^ Step #21 - "compile-libfuzzer-address-x86_64": G("Use vec/src/openbabel/include/openbabel/rotor.h:449:5: tnote: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": o r449 | 3 OB_DEPRECATED:_MSG("Se:e GetTorIsionValuses()") Step #21 - "compile-libfuzzer-address-x86_64": A |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: ppnote: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | r #defineo x() insteaOB_DEPdRECATED_.MSG(msg)" [[deprecate)d(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 452 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 454 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: /src/openbabel/src/forcefield.cpp:1444:8: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": M 1444 | rSG(msg) l.SetFi[[deprecated(mxAtoms(sg)]] Step #21 - "compile-libfuzzer-address-x86_64": fixed);|  ^ Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: /src/openbabel/src/forcefield.cpp:1457:32: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1457 | combi469 | nations * i= rotor->f (bondGetResol1 == VZerutoion().s) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": ize(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 471 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h/src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 473 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": :38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 494 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 496 | else if (b/src/openbabel/src/forcefield.cppo:n1622d:28 := = Vwarning: Zer'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations]o) Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": 1622 | |  ^ Step #21 - "compile-libfuzzer-address-x86_64": rl./src/openbabel/include/openbabel/math/vector3.h:273:5:SetFixAtoms(fixed); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1635 | combinations *= rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1685 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecate d(msnote: g)]] Step #21 - "compile-libfuzzer-address-x86_64": 'operator==' has been explicitly marked deprecated here|  Step #21 - "compile-libfuzzer-address-x86_64": ^ Step #21 - "compile-libfuzzer-address-x86_64":  273 | OB_D/src/openbabel/src/forcefield.cppE:P1721R:ECATED_MSG("Use31 : vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()/src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]") Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": | 498 | ^ Step #21 - "compile-libfuzzer-address-x86_64":   /src/openbabel/build/include/openbabel/babelconfig.h : 38 : 38 : elnote: seexpanded from macro 'OB_DEPRECATED_MSG' i Step #21 - "compile-libfuzzer-address-x86_64": f (bo n38d | 3 = = #VdZeefrion)e Step #21 - "compile-libfuzzer-address-x86_64": O B| _D ^E Step #21 - "compile-libfuzzer-address-x86_64": PRECAT/src/openbabel/include/openbabel/math/vector3.hE:D273_:M5S:G (msnote: g)'operator==' has been explicitly marked deprecated here [ Step #21 - "compile-libfuzzer-address-x86_64": [de p273r | e c a t eOdB(_mDsEgPRE)C]A]TE Step #21 - "compile-libfuzzer-address-x86_64": D _| MS ^G Step #21 - "compile-libfuzzer-address-x86_64": ("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 514 |  /src/openbabel/src/forcefield.cppi:f1761 :(45b:o nd1warning: =='GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] V Step #21 - "compile-libfuzzer-address-x86_64": Zero) Step #21 - "compile-libfuzzer-address-x86_64": 1761 | |  ^ Step #21 - "compile-libfuzzer-address-x86_64":   /src/openbabel/include/openbabel/math/vector3.h : 273f:o5r: (unnote: si'operator==' has been explicitly marked deprecated heregn Step #21 - "compile-libfuzzer-address-x86_64": ed i n273t j | = 0 ;O Bj_ DDG_eMtSRGe(s"oUlsuet ivoenc(tor)3.:s:iIzseA(p)prox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": ; j++) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 516 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 518 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 520 | else if (bond4 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 533 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 535 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 537 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 539 | else if (bond4 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 564 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 566 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATE/src/openbabel/src/forcefield.cpp:2420:9: D_MSG("Use vector3::IsAwarning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": p 2420 | if (IsNearZero(scale)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": prox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 568 | else if (bond3 == VZero)/src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2657 | if (IsNear(e_n Step #21 - "compile-libfuzzer-address-x86_64": 2, e_n1, 1.0e-7)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 570 | else if (bond4 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #defi/src/openbabel/src/forcefield.cpp:2838:11: nwarning: e 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2838 | OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  if (IsNear(e_n2, _e_n1, _econv) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 572 | else if (bond5 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2788 | if (atom->GetVector() != VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp/src/openbabel/src/forcefield.cpp::28053039::2311:: warning: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations]'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": 2805 | 3039 | if (!hasY && !IsNearZero(atom->y())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define Oif (IsNear(B_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": e_n2, _e_n1, _econv) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() i/src/openbabel/src/builder.cppn:s660t:e21a:d ")warning: Step #21 - "compile-libfuzzer-address-x86_64":  | 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  660 | /src/openbabel/build/include/openbabel/babelconfig.h : 38 : 38 : note:  expanded from macro 'OB_DEPRECATED_MSG'  Step #21 - "compile-libfuzzer-address-x86_64": if (38b | o n d 1 #=d=e fViZneer oO)B_ Step #21 - "compile-libfuzzer-address-x86_64": D E| PR ^E Step #21 - "compile-libfuzzer-address-x86_64": CATED/src/openbabel/include/openbabel/math/vector3.h_:M273S:G5(:m sg)note: ['operator==' has been explicitly marked deprecated here[d Step #21 - "compile-libfuzzer-address-x86_64": epr e273c | a t e d (OmBs_gD)]]E Step #21 - "compile-libfuzzer-address-x86_64": P R| EC ^A Step #21 - "compile-libfuzzer-address-x86_64": TED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64":  /src/openbabel/src/mol.cpp38: | 2826 : 23 #de: warning: fine OB_DEPRECATED_MSG(msg) ['IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2826 | if (!hasX && !IsNearZero(atom->x())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations][deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 718 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 720 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECA/src/openbabel/src/builder.cppT:E1089D:9 Step #21 - "compile-libfuzzer-address-x86_64": : |  ^warning: Step #21 - "compile-libfuzzer-address-x86_64": 'GetFirstAtom' is deprecated [-Wdeprecated-declarations]/src/openbabel/build/include/openbabel/babelconfig.h Step #21 - "compile-libfuzzer-address-x86_64": :37 :108929 | :   note: moexpanded from macro 'OB_DEPRECATED'l. Step #21 - "compile-libfuzzer-address-x86_64": G e37t | F i r s t#Adteofmi(n)e- >OGBe_tDHEyPbR(E)C;AT Step #21 - "compile-libfuzzer-address-x86_64": E D| [ ^[ Step #21 - "compile-libfuzzer-address-x86_64": depre/src/openbabel/include/openbabel/mol.hc:a287t:e5d:] ] Step #21 - "compile-libfuzzer-address-x86_64": note: | 'GetFirstAtom' has been explicitly marked deprecated here ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  287 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #def/src/openbabel/src/forcefield.cppi:n3735e: 9O:B _DEwarning: PRE'IsNearZero' is deprecated [-Wdeprecated-declarations]CA Step #21 - "compile-libfuzzer-address-x86_64": T E3735D | [ [ d eipfr e(cIastNeeda]r]Ze Step #21 - "compile-libfuzzer-address-x86_64": r o| (l ^e Step #21 - "compile-libfuzzer-address-x86_64": ngth)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3802 | if (IsNearZero(length)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp/src/openbabel/src/forcefield.cpp::32524195:9: :warning: 24:'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4195 | warning:   'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] if (IsNearZero(l_ij) || Step #21 - "compile-libfuzzer-address-x86_64": 3252 | if ((*IsNringit)->PeathSize() == 5) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated herea Step #21 - "compile-libfuzzer-address-x86_64": 65rZero(l_jk) || IsNea | OB_DEPRrZero(l_klECATED_) ) { Step #21 - "compile-libfuzzer-address-x86_64": M| SG ^( Step #21 - "compile-libfuzzer-address-x86_64": "Use Size/src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | ( OB_DEP) insteaRECATED Step #21 - "compile-libfuzzer-address-x86_64": | d" ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29:) Step #21 - "compile-libfuzzer-address-x86_64": note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": | 37 | #define OB_DEPRECA ^T Step #21 - "compile-libfuzzer-address-x86_64": ED [[deprecated]]/src/openbabel/build/include/openbabel/babelconfig.h Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": :38:38: /src/openbabel/src/forcefield.cpp:4195:29: note: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' 4195 | Step #21 - "compile-libfuzzer-address-x86_64": if (IsNe a38r | Zero(l_ij) || IsNearZero(l _ j#kd) || IsNearZefero(l_kl) ) {i Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: nnote: 'IsNearZero' has been explicitly marked deprecated heree Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEOPBR_ECATEDDE Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": PR/src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: ECATED_/src/openbabel/src/builder.cpp:1427:17:expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": MS G37warning: |   'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]  Step #21 - "compile-libfuzzer-address-x86_64": #d (1427e | f i n e O Bi_fDms (bondE1P R=E=Cg VZAerToE)D {) [[[de Step #21 - "compile-libfuzzer-address-x86_64": pre | ca[ ^td Step #21 - "compile-libfuzzer-address-x86_64": ed]]/src/openbabel/include/openbabel/math/vector3.hep:r273: Step #21 - "compile-libfuzzer-address-x86_64": 5 :ec| a ^ Step #21 - "compile-libfuzzer-address-x86_64": note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": t e273d | /src/openbabel/src/forcefield.cpp (: 4195 : 49O:msBg_D EPRwarning: EC'IsNearZero' is deprecated [-Wdeprecated-declarations])A]T Step #21 - "compile-libfuzzer-address-x86_64": ED_M S4195G | ( ]" Step #21 - "compile-libfuzzer-address-x86_64": Us e viefc t(oIrs3N:| e ^ar:ZIesrAop(p Step #21 - "compile-libfuzzer-address-x86_64": l_irj)ox (|)| iInssNteeaardZ.e"r)o( Step #21 - "compile-libfuzzer-address-x86_64": l _| jk ^ Step #21 - "compile-libfuzzer-address-x86_64": ) /src/openbabel/build/include/openbabel/babelconfig.h|:|38 :I38s:N earnote: Zeexpanded from macro 'OB_DEPRECATED_MSG'ro Step #21 - "compile-libfuzzer-address-x86_64": (l _38k | l ) ) #{de Step #21 - "compile-libfuzzer-address-x86_64": f i| ne ^ Step #21 - "compile-libfuzzer-address-x86_64": OB_DEP/src/openbabel/include/openbabel/obutil.hR:E197C:A3T:E D_Mnote: SG'IsNearZero' has been explicitly marked deprecated here(m Step #21 - "compile-libfuzzer-address-x86_64": s g197) | [ [OdBe_pDrEePcRaEtCeAdT(EmDsg Step #21 - "compile-libfuzzer-address-x86_64": ) ]| ] ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": | /src/openbabel/build/include/openbabel/babelconfig.h ^: Step #21 - "compile-libfuzzer-address-x86_64": 37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3274:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3274 | else if ((*ringit)->PathSize() == 6) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning:  'IsNearZero' is deprecated [-Wdeprecated-declarations]|  Step #21 - "compile-libfuzzer-address-x86_64": ^ Step #21 - "compile-libfuzzer-address-x86_64": 4285 |  /src/openbabel/build/include/openbabel/babelconfig.h :i38f: 38(:I sNenote: arexpanded from macro 'OB_DEPRECATED_MSG'Ze Step #21 - "compile-libfuzzer-address-x86_64": ro( l38_ | i j ) |#|d eIfsiNneea rOZBe_rDEPRECoA(TlE_Dj_kM)S G|(|m sIgs)N e[a[rdZeeprroe(cla_tkeld)( m)s g{)] Step #21 - "compile-libfuzzer-address-x86_64": ] | Step #21 - "compile-libfuzzer-address-x86_64":  ^| Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 452 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 443 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 355 | rotor->SetDelta(delta); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 34 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 5 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 589 | gd->GetOriginVector(origin); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #21 - "compile-libfuzzer-address-x86_64": 310 | else if (vs[0][0] == '2') Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 51 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 9 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 911 | switch(pRD->ReactionType) Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 990 | switch(pRD->ReactionType) Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #21 - "compile-libfuzzer-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~ ^~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | gd->GetOriginVector(origin); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 158 | switch (chirality) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #21 - "compile-libfuzzer-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #21 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #21 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #21 - "compile-libfuzzer-address-x86_64": 148 | 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #21 - "compile-libfuzzer-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #defin/src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations]e OB_DEPRECATED [[deprecat Step #21 - "compile-libfuzzer-address-x86_64": ed] 441 | ] if ( Step #21 - "compile-libfuzzer-address-x86_64": I|  ^ Step #21 - "compile-libfuzzer-address-x86_64": sNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 1523 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #21 - "compile-libfuzzer-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~~~~~ ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #21 - "compile-libfuzzer-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 9 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 4 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #21 - "compile-libfuzzer-address-x86_64": [ 75%] Built target openbabel Step #21 - "compile-libfuzzer-address-x86_64": [ 75%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 255 | // / \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 270 | // / \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 285 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 287 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 310 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 432 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 102 | switch (units.at(i).type) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #defi/src/openbabel/test/stereotest.cpp:132:ne13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 132 | OB_DE swiPRECATEDtc_MShG (units.at(ms(gi).type) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": ) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Linking CXX executable ../bin/obabel Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Built target fuzz_obconversion_smiles Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Built target fuzz_obconversion_sdf Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Built target roundtrip Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Built target obabel Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Built target fuzz_convert Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 190 | x = m2.Get( i, j ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": 17 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 24 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #21 - "compile-libfuzzer-address-x86_64": [100%] Built target test_runner Step #21 - "compile-libfuzzer-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-address-x86_64/ Finished Step #21 - "compile-libfuzzer-address-x86_64" Starting Step #22 - "build-check-libfuzzer-address-x86_64" Step #22 - "build-check-libfuzzer-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #22 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpzcxcrham/fuzz_obconversion_sdf Step #22 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpzcxcrham/fuzz_obconversion_smiles Step #22 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpzcxcrham/fuzz_convert Finished Step #22 - "build-check-libfuzzer-address-x86_64" Starting Step #23 Step #23: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #23 Starting Step #24 Step #24: Already have image: gcr.io/oss-fuzz/openbabel Step #24: adding: fuzz_convert (deflated 68%) Step #24: adding: fuzz_obconversion_sdf (deflated 68%) Step #24: adding: fuzz_obconversion_smiles (deflated 68%) Step #24: adding: llvm-symbolizer (deflated 66%) Finished Step #24 Starting Step #25 Step #25: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #25: % Total % Received % Xferd Average Speed Time Time Time Current Step #25: Dload Upload Total Spent Left Speed Step #25: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 767 --:--:-- --:--:-- --:--:-- 769 Finished Step #25 Starting Step #26 Step #26: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #26: % Total % Received % Xferd Average Speed Time Time Time Current Step #26: Dload Upload Total Spent Left Speed Step #26: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 42.9M 0 0 100 42.9M 0 94.5M --:--:-- --:--:-- --:--:-- 94.6M Finished Step #26 Starting Step #27 Step #27: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #27: % Total % Received % Xferd Average Speed Time Time Time Current Step #27: Dload Upload Total Spent Left Speed Step #27: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 210 --:--:-- --:--:-- --:--:-- 210 Finished Step #27 Starting Step #28 Step #28: Already have image (with digest): gcr.io/cloud-builders/curl Step #28: % Total % Received % Xferd Average Speed Time Time Time Current Step #28: Dload Upload Total Spent Left Speed Step #28: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 180 --:--:-- --:--:-- --:--:-- 180 Finished Step #28 Starting Step #29 Step #29: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #29 Starting Step #30 - "compile-libfuzzer-undefined-x86_64" Step #30 - "compile-libfuzzer-undefined-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": vm.mmap_rnd_bits = 28 Step #30 - "compile-libfuzzer-undefined-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": CC=clang Step #30 - "compile-libfuzzer-undefined-x86_64": CXX=clang++ Step #30 - "compile-libfuzzer-undefined-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -fno-sanitize=function Step #30 - "compile-libfuzzer-undefined-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -stdlib=libc++ Step #30 - "compile-libfuzzer-undefined-x86_64": RUSTFLAGS=--cfg fuzzing -Cdebuginfo=1 -Cforce-frame-pointers Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": + mkdir build Step #30 - "compile-libfuzzer-undefined-x86_64": + cd build Step #30 - "compile-libfuzzer-undefined-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #30 - "compile-libfuzzer-undefined-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #30 - "compile-libfuzzer-undefined-x86_64": CMake. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #30 - "compile-libfuzzer-undefined-x86_64": CMake that the project does not need compatibility with older versions. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- The C compiler identification is Clang 18.1.8 Step #30 - "compile-libfuzzer-undefined-x86_64": -- The CXX compiler identification is Clang 18.1.8 Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compiler ABI info Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compiler ABI info - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compile features Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compile features - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compiler ABI info Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compiler ABI info - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compile features Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compile features - done Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #30 - "compile-libfuzzer-undefined-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #30 - "compile-libfuzzer-undefined-x86_64": of CMake. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #30 - "compile-libfuzzer-undefined-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #30 - "compile-libfuzzer-undefined-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #30 - "compile-libfuzzer-undefined-x86_64": behavior and not rely on setting a policy to OLD. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Using included inchi library. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #30 - "compile-libfuzzer-undefined-x86_64": libxml2 not found - disabling CML support! Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for conio.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for conio.h - not found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/time.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/time.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for time.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for time.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strings.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strings.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for regex.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for regex.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for C++ include sstream Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for C++ include sstream - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for rint Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for rint - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for snprintf Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for snprintf - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sranddev Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sranddev - not found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strcasecmp Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strcasecmp - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strncasecmp Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strncasecmp - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for xdrstdio_create Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for xdrstdio_create - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for dlopen in dl Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for dlopen in dl - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/types.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/types.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stdint.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stdint.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stddef.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stddef.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check size of clock_t Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check size of clock_t - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #30 - "compile-libfuzzer-undefined-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found Threads: TRUE Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for getopt Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for getopt - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- GUI will not be built Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #30 - "compile-libfuzzer-undefined-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #30 - "compile-libfuzzer-undefined-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #30 - "compile-libfuzzer-undefined-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": Call Stack (most recent call first): Step #30 - "compile-libfuzzer-undefined-x86_64": test/CMakeLists.txt:233 (include) Step #30 - "compile-libfuzzer-undefined-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.10.14") Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #30 - "compile-libfuzzer-undefined-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #30 - "compile-libfuzzer-undefined-x86_64": CMake. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #30 - "compile-libfuzzer-undefined-x86_64": CMake that the project does not need compatibility with older versions. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Configuring done (4.6s) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Generating done (0.1s) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Build files have been written to: /src/openbabel/build Step #30 - "compile-libfuzzer-undefined-x86_64": ++ nproc Step #30 - "compile-libfuzzer-undefined-x86_64": + make -j 32 Step #30 - "compile-libfuzzer-undefined-x86_64": [ 0%] Generating atomtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating phmodeldata.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating bondtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating resdata.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating torlib.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating types.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating atomizationenergies.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating ringtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Generating spacegroups.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Built target data_headers Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 82 | _ival=nullptr; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 297 | if (!IsNearZero(val[2])) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #30 - "compile-libfuzzer-undefined-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1523 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1539 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1572 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1635 | combinations *= rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1685 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | if (bond2 == VZero || v1/src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2420 | if (IsNearZero(scale)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  == VZero) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 359 | if (bIsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:2657361 | : 26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 361 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | if OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": (IsNear(e_n2, e_n1, 1.0e-7/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": )) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2725 | /src/openbabel/src/builder.cpp : 430if (I:s23N:ear(e_n2, e_n1, 1.0e-7)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPREC warning: ATED_MSG("Use'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": I s430 | if (boApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": nd1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 432 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 434 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 450 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 452 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_/src/openbabel/src/forcefield.cpp:3039:11: warning: D'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]EP Step #30 - "compile-libfuzzer-undefined-x86_64": R EC3039A | T E D _ iMf S(IGs(Ne"arU(es_en 2,ve _ce_tn1o, r_e3co:n:Iv) Step #30 - "compile-libfuzzer-undefined-x86_64": | s ^A Step #30 - "compile-libfuzzer-undefined-x86_64": ppr/src/openbabel/include/openbabel/obutil.h:o189x:3(: ) inote: n'IsNear' has been explicitly marked deprecated heres Step #30 - "compile-libfuzzer-undefined-x86_64": tea189 | d . O"B_)DEPR Step #30 - "compile-libfuzzer-undefined-x86_64": EC AT| ED_ ^MS Step #30 - "compile-libfuzzer-undefined-x86_64": G("Use/src/openbabel/build/include/openbabel/babelconfig.h I:sA38p:pr38ox:( ) instnote: expanded from macro 'OB_DEPRECATED_MSG'ead" Step #30 - "compile-libfuzzer-undefined-x86_64": ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38 : 38 | note: expanded from macro 'OB_DEPRECATED_MSG'  Step #30 - "compile-libfuzzer-undefined-x86_64": #38d | e f i n e# dOeBf_iDnEeP ROEBC_ADTEEPDR_ECMSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 454 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 469 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 471 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 473 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 494 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 496 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 498 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2788 | if (atom->GetVector() != VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64":  514 | if (bond1 == VZ/src/openbabel/src/mol.cpp:er2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2803 | o) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | if (!hasX && !IsNearZero(atom->x())) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  OB_/src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": DEPRECATED_MSG("/src/openbabel/src/mol.cpp:2805:U23se:  warning: ve'IsNearZero' is deprecated [-Wdeprecated-declarations]c Step #30 - "compile-libfuzzer-undefined-x86_64": 2805 | if (!hastoYr 3&:&:IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": !IsNearZero(atom->y()))38 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | | O B_ #defiDEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": n| e ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATEODB _[D[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": EPRECATED_MSG(msg) [[d/src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": epr e2826c | if (!hasX &&a !IsNearZero(atom->x()))t Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": e/src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECAd(TmED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | sg ) ]#define OB_DEPRE]CA Step #30 - "compile-libfuzzer-undefined-x86_64": T ED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 516 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 518 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 520 | else if (bond4 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRE/src/openbabel/src/forcefield.cpp:3719:9: CATED_MSGwarning: 'IsNearZero' is deprecated [-Wdeprecated-declarations]("Use v Step #30 - "compile-libfuzzer-undefined-x86_64": 3719 | if (IsNearZero(l_ector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #defiij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATEDne OB_DEPRECATED_MSG [[dep(msg) [recated[deprec]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: ated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 533 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 535 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPREC'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3735 | if (IsNearZero(length)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) /src/openbabel/src/builder.cpp{:537 Step #30 - "compile-libfuzzer-undefined-x86_64": : 28| : ^ Step #30 - "compile-libfuzzer-undefined-x86_64": warning: /src/openbabel/include/openbabel/obutil.h'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]:197 Step #30 - "compile-libfuzzer-undefined-x86_64": : 3:537 |   note:  'IsNearZero' has been explicitly marked deprecated here  Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | eOlBs_eD EiPfR E(CbAoTnEdD3 Step #30 - "compile-libfuzzer-undefined-x86_64": = =| V ^Z Step #30 - "compile-libfuzzer-undefined-x86_64": ero)/src/openbabel/build/include/openbabel/babelconfig.h: Step #30 - "compile-libfuzzer-undefined-x86_64": 37 :| 29: ^ Step #30 - "compile-libfuzzer-undefined-x86_64": note: expanded from macro 'OB_DEPRECATED'/src/openbabel/include/openbabel/math/vector3.h: Step #30 - "compile-libfuzzer-undefined-x86_64": 273 :537: |   note: #'operator==' has been explicitly marked deprecated herede Step #30 - "compile-libfuzzer-undefined-x86_64": f ine273 | O B _ D EOPBR_EDCEAPTREEDC A[T[EdDe_pMrSeGc(a"tUesde] ]ve Step #30 - "compile-libfuzzer-undefined-x86_64": c | to ^r Step #30 - "compile-libfuzzer-undefined-x86_64": 3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #def/src/openbabel/src/forcefield.cppi:n3802e: 9O: Bwarning: _DE'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": PRE3802C | A T E D _iMfS G((ImssNge)a r[Z[edreop(rleecnagttehd)()m s{g) Step #30 - "compile-libfuzzer-undefined-x86_64": ] ]|  Step #30 - "compile-libfuzzer-undefined-x86_64": ^ Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3252 | if ((*ringit)->PathSize() == 5) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:/src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 539 | else if (bond4 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector653::IsApprox(:) 5i: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 65 | OBnstead._D")EPRECA Step #30 - "compile-libfuzzer-undefined-x86_64": TED_MSG("Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38:  |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:3838 | #define O:B_D38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38EPRECA | TED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3274:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3274 | else if ((*ringit)->PathSize() == 6) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": | /src/openbabel/src/builder.cpp:564:23: ^ warning:  Step #30 - "compile-libfuzzer-undefined-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 564/src/openbabel/src/mol.cpp | :3343:31: warning:  'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations]  Step #30 - "compile-libfuzzer-undefined-x86_64": 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": 3343 |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h: 37:29 if: (bond1 == Vnote: Zexpanded from macro 'OB_DEPRECATED'e Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ro) Step #30 - "compile-libfuzzer-undefined-x86_64": | | loopSize/src/openbabel/src/forcefield.cpp = (*ringit ^:3973:9) Step #30 - "compile-libfuzzer-undefined-x86_64": :/src/openbabel/include/openbabel/math/vector3.h- warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": :273:5:  note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 3973>PathSize(); | Step #30 - "compile-libfuzzer-undefined-x86_64": | 273 ^ | Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h : O65:5:  ifB_ (note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": IsNearZeroDEPRECATED_MSG(length_j("lUse )) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h: 19765: | vOB_DEPRECATED_MSG("Use Sizece(t)or3::IsApp instea3d:" ) Step #30 - "compile-libfuzzer-undefined-x86_64": note: | 'IsNearZero' has been explicitly marked deprecated here ^ Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": ro/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #dex() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #defi 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | ne OB_DEPRECATED_MSG(msg) [[deprecated(msg) #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": fine OB_DEP]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": RECATED_MSG(msg) [[depr/src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 566 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG'ecated(msg)/src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations]]] Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": 3991|  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  | Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEP iRECATED_MSG(mfsg) [[d ep(Irecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": sNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:568:28: /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecatewarning: d]'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 568 | el] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": se if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define/src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations]  Step #30 - "compile-libfuzzer-undefined-x86_64": 4006 | OB_ if (IsNDEPRECAearZeTro(dl) ||ED_MSG (Imsg) [[sNearZero(fadeprecabst(ed(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": dl - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:570:28: 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 570 | else i/src/openbabel/src/forcefield.cpp:4006:27: warning: f'IsNearZero' is deprecated [-Wdeprecated-declarations] (bon Step #30 - "compile-libfuzzer-undefined-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.hd:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_D4 == VZeEPRECATro) Step #30 - "compile-libfuzzer-undefined-x86_64": | ED Step #30 - "compile-libfuzzer-undefined-x86_64": ^ |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": # 273 | OB_dDeEPRECATED_MSG("Ufse vector3::Isine OB_Approx() insteDad.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": EPRECATED [[deprecate/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | d]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4076 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 572 | else if (bond5 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  if (IsNearZero(length_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_/src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 660 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 718 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": .") Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195 |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h::9: warning: 38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 'IsNearZero' is deprecated [-Wdeprecated-declarations]38 Step #30 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  | #de/src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": fine OB_DEPR/src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecatedCATE]] Step #30 - "compile-libfuzzer-undefined-x86_64": | D_MSG(ms ^ Step #30 - "compile-libfuzzer-undefined-x86_64": g) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_j/src/openbabel/src/builder.cpp:720:28k) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": :  197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37warning: :'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]29: note:  Step #30 - "compile-libfuzzer-undefined-x86_64": 720 | else iexpanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [f (bond2 [deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::Is/src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4285 | if (Approx() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^I Step #30 - "compile-libfuzzer-undefined-x86_64": sNearZero(l_ij) || IsNearZero(l_jk/src/openbabel/build/include/openbabel/babelconfig.h) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3::38 note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_D:38: note: EPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.hexpanded from macro 'OB_DEPRECATED_MSG':37 Step #30 - "compile-libfuzzer-undefined-x86_64": 38:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | | # define OB_DEPRECATED [[deprec #define ated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": O/src/openbabel/src/forcefield.cpp:4285:29: B_DEPRECATED_MSG(msg) [[deprecawarning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": ted(msg)] 4285 | if (IsNearZero(] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^l_ij) || IsNearZero(l_j Step #30 - "compile-libfuzzer-undefined-x86_64": k) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1427 | if (bond1 == VZero) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 452 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 443 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 355 | rotor->SetDelta(delta); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 371 | if (!IsNearZero(pcharge)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 5 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 589 | gd->GetOriginVector(origin); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 34 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead"[ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | else if (vs[0][0] == '2') Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 51 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 911 | switch(pRD->ReactionType) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 990 | switch(pRD->ReactionType) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #30 - "compile-libfuzzer-undefined-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~ ^~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 9 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | gd->GetOriginVector(origin); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 158 | switch (chirality) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #30 - "compile-libfuzzer-undefined-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 755 | (float[ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": )maxint[2] - (float)minint[2] >= MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 754 | 1 (float)maxint[1] - (f warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": loat)minint[1] >= MAXABS || Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #30 - "compile-libfuzzer-undefined-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #30 - "compile-libfuzzer-undefined-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1523 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #30 - "compile-libfuzzer-undefined-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~~~~~ ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #30 - "compile-libfuzzer-undefined-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 9 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 4 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #30 - "compile-libfuzzer-undefined-x86_64": [ 75%] Built target openbabel Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 255 | // / \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 270 | // / \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 285 | // \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 287 | // \  Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 102 | switch (units.at(i).type) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | // \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 132 | switch (units.at(i).type) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:/src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 96 | 10: OBwarning: backslash and newline separated by space [-Wbackslash-newline-escape]_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() Step #30 - "compile-libfuzzer-undefined-x86_64": ins 432 | tead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": // \  Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h|  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": :38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Linking CXX executable ../bin/obabel Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Linking CXX executable ../bin/roundtrip Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Linking CXX executable ../bin/fuzz_convert Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Built target fuzz_obconversion_sdf Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Built target fuzz_obconversion_smiles Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Built target obabel Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Built target roundtrip Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Built target fuzz_convert Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 190 | x = m2.Get( i, j ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 17 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 24 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #30 - "compile-libfuzzer-undefined-x86_64": [100%] Built target test_runner Step #30 - "compile-libfuzzer-undefined-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-undefined-x86_64/ Finished Step #30 - "compile-libfuzzer-undefined-x86_64" Starting Step #31 - "build-check-libfuzzer-undefined-x86_64" Step #31 - "build-check-libfuzzer-undefined-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #31 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpz9ccjl41/fuzz_obconversion_sdf Step #31 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpz9ccjl41/fuzz_obconversion_smiles Step #31 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpz9ccjl41/fuzz_convert Finished Step #31 - "build-check-libfuzzer-undefined-x86_64" Starting Step #32 Step #32: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #32 Starting Step #33 Step #33: Already have image: gcr.io/oss-fuzz/openbabel Step #33: adding: fuzz_convert (deflated 72%) Step #33: adding: fuzz_obconversion_sdf (deflated 72%) Step #33: adding: fuzz_obconversion_smiles (deflated 72%) Step #33: adding: llvm-symbolizer (deflated 66%) Finished Step #33 Starting Step #34 Step #34: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #34: % Total % Received % Xferd Average Speed Time Time Time Current Step #34: Dload Upload Total Spent Left Speed Step #34: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 835 --:--:-- --:--:-- --:--:-- 837 Finished Step #34 Starting Step #35 Step #35: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #35: % Total % Received % Xferd Average Speed Time Time Time Current Step #35: Dload Upload Total Spent Left Speed Step #35: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 39.9M 0 0 100 39.9M 0 90.5M --:--:-- --:--:-- --:--:-- 90.6M Finished Step #35 Starting Step #36 Step #36: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #36: % Total % Received % Xferd Average Speed Time Time Time Current Step #36: Dload Upload Total Spent Left Speed Step #36: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 256 --:--:-- --:--:-- --:--:-- 257 Finished Step #36 Starting Step #37 Step #37: Already have image (with digest): gcr.io/cloud-builders/curl Step #37: % Total % Received % Xferd Average Speed Time Time Time Current Step #37: Dload Upload Total Spent Left Speed Step #37: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 36 0 0 100 36 0 193 --:--:-- --:--:-- --:--:-- 192 100 36 0 0 100 36 0 192 --:--:-- --:--:-- --:--:-- 192 Finished Step #37 Starting Step #38 Step #38: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #38 PUSH DONE