starting build "6100636c-9cfc-4a63-b161-13b92553e432" FETCHSOURCE BUILD Starting Step #0 Step #0: Already have image (with digest): gcr.io/cloud-builders/git Step #0: Cloning into 'oss-fuzz'... Finished Step #0 Starting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802" Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Already have image (with digest): gcr.io/cloud-builders/docker Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Sending build context to Docker daemon 5.12kB Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Step 1/5 : FROM gcr.io/oss-fuzz-base/base-builder Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": latest: Pulling from oss-fuzz-base/base-builder Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": b549f31133a9: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 7b954c5d6182: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 42697d346cd9: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5b19aac274d4: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": b6999eff076d: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 238a665da098: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 4f46d5590e24: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": cd2b4c9da7fd: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": d808497c1dbf: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5896cc6581b6: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": a142c85897f9: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 21e67379fcf0: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": da02b2034e8d: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": c93cbaef1fbb: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 7b9f7a3d1124: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": f9f64acbb284: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 923220995acc: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": eee4c2054a82: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": ca686f029ae6: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 352854b41c7f: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": fdb016024c59: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": a6a68ef1e3a5: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": b8c729f4a0da: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5c74af6d0a68: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": dbbe6f0a4b88: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 0752dfadb35a: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": f1d7e23a64f2: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": dc3e4ad9f9ca: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 4c3a0eae4060: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 1478f6795730: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 30cbb873dae5: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": bb8628f7ef74: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 4ea1d2f93bf5: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 04aff6b4b34c: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 0d19f32fc376: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 989666b15241: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 67c526b96287: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": f7f42c5ecb02: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 7649df07cef5: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": baf75b2ea6d2: Pulling fs layer Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5b19aac274d4: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 4f46d5590e24: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": b6999eff076d: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 238a665da098: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": cd2b4c9da7fd: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": dbbe6f0a4b88: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": d808497c1dbf: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 04aff6b4b34c: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5896cc6581b6: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 1478f6795730: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 0d19f32fc376: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": a142c85897f9: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 0752dfadb35a: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 989666b15241: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 30cbb873dae5: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 21e67379fcf0: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": f1d7e23a64f2: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 67c526b96287: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": bb8628f7ef74: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": da02b2034e8d: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": dc3e4ad9f9ca: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 4ea1d2f93bf5: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": c93cbaef1fbb: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 4c3a0eae4060: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": f7f42c5ecb02: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5c74af6d0a68: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 7b9f7a3d1124: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": fdb016024c59: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 7649df07cef5: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": f9f64acbb284: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 923220995acc: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": a6a68ef1e3a5: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": eee4c2054a82: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 352854b41c7f: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": baf75b2ea6d2: Waiting Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 42697d346cd9: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 42697d346cd9: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": b549f31133a9: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": b549f31133a9: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": b6999eff076d: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5b19aac274d4: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5b19aac274d4: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 238a665da098: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": cd2b4c9da7fd: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 7b954c5d6182: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 7b954c5d6182: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": d808497c1dbf: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": b549f31133a9: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": a142c85897f9: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": a142c85897f9: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 21e67379fcf0: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 21e67379fcf0: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": da02b2034e8d: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": da02b2034e8d: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": c93cbaef1fbb: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": c93cbaef1fbb: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 7b9f7a3d1124: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 7b9f7a3d1124: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5896cc6581b6: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5896cc6581b6: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": f9f64acbb284: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": f9f64acbb284: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 923220995acc: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 923220995acc: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": eee4c2054a82: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": eee4c2054a82: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": ca686f029ae6: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 352854b41c7f: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 352854b41c7f: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": fdb016024c59: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": fdb016024c59: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": a6a68ef1e3a5: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 4f46d5590e24: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 4f46d5590e24: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": b8c729f4a0da: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": b8c729f4a0da: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5c74af6d0a68: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5c74af6d0a68: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": dbbe6f0a4b88: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": dbbe6f0a4b88: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 0752dfadb35a: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 0752dfadb35a: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": f1d7e23a64f2: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": dc3e4ad9f9ca: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": dc3e4ad9f9ca: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 4c3a0eae4060: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 30cbb873dae5: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 30cbb873dae5: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 1478f6795730: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 1478f6795730: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": bb8628f7ef74: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": bb8628f7ef74: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 4ea1d2f93bf5: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 4ea1d2f93bf5: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 04aff6b4b34c: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 04aff6b4b34c: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 7b954c5d6182: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 0d19f32fc376: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 0d19f32fc376: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 42697d346cd9: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 989666b15241: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 989666b15241: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 7649df07cef5: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 67c526b96287: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 67c526b96287: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": baf75b2ea6d2: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": f7f42c5ecb02: Verifying Checksum Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": f7f42c5ecb02: Download complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5b19aac274d4: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": b6999eff076d: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 238a665da098: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 4f46d5590e24: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": cd2b4c9da7fd: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": d808497c1dbf: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5896cc6581b6: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": a142c85897f9: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 21e67379fcf0: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": da02b2034e8d: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": c93cbaef1fbb: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 7b9f7a3d1124: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": f9f64acbb284: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 923220995acc: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": eee4c2054a82: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": ca686f029ae6: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 352854b41c7f: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": fdb016024c59: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": a6a68ef1e3a5: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": b8c729f4a0da: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 5c74af6d0a68: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": dbbe6f0a4b88: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 0752dfadb35a: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": f1d7e23a64f2: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": dc3e4ad9f9ca: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 4c3a0eae4060: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 1478f6795730: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 30cbb873dae5: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": bb8628f7ef74: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 4ea1d2f93bf5: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 04aff6b4b34c: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 0d19f32fc376: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 989666b15241: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 67c526b96287: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": f7f42c5ecb02: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 7649df07cef5: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": baf75b2ea6d2: Pull complete Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Digest: sha256:71766527f1dfc361aa9c913ceb0976362ea38a88cb28eea709421cb1c613a723 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-builder:latest Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": ---> 5288b3545088 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Step 2/5 : RUN apt-get update && apt install -y cmake Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": ---> Running in 39c17d360d40 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Get:1 http://security.ubuntu.com/ubuntu focal-security InRelease [128 kB] Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Hit:2 http://archive.ubuntu.com/ubuntu focal InRelease Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Get:3 http://archive.ubuntu.com/ubuntu focal-updates InRelease [128 kB] Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Hit:4 http://archive.ubuntu.com/ubuntu focal-backports InRelease Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Fetched 256 kB in 8s (33.6 kB/s) Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Reading package lists... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802":  Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Reading package lists... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Building dependency tree... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Reading state information... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": The following packages were automatically installed and are no longer required: Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": autotools-dev libsigsegv2 m4 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Use 'apt autoremove' to remove them. Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": The following additional packages will be installed: Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Suggested packages: Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": cmake-doc ninja-build lrzip Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": The following NEW packages will be installed: Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": cmake cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Need to get 15.0 MB of archives. Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": After this operation, 65.0 MB of additional disk space will be used. Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libicu66 amd64 66.1-2ubuntu2.1 [8515 kB] Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2 amd64 2.9.10+dfsg-5ubuntu0.20.04.10 [640 kB] Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1 amd64 1.34.2-1ubuntu1.5 [80.9 kB] Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake-data all 3.16.3-1ubuntu1.20.04.1 [1613 kB] Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libarchive13 amd64 3.4.0-2ubuntu1.5 [327 kB] Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake amd64 3.16.3-1ubuntu1.20.04.1 [3668 kB] Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": debconf: delaying package configuration, since apt-utils is not installed Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Fetched 15.0 MB in 7s (2212 kB/s) Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Selecting previously unselected package libicu66:amd64. Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17483 files and directories currently installed.) Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Preparing to unpack .../0-libicu66_66.1-2ubuntu2.1_amd64.deb ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Unpacking libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Selecting previously unselected package libxml2:amd64. Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Preparing to unpack .../1-libxml2_2.9.10+dfsg-5ubuntu0.20.04.10_amd64.deb ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Unpacking libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.10) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Selecting previously unselected package libuv1:amd64. Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Preparing to unpack .../2-libuv1_1.34.2-1ubuntu1.5_amd64.deb ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Unpacking libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Selecting previously unselected package cmake-data. Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Preparing to unpack .../3-cmake-data_3.16.3-1ubuntu1.20.04.1_all.deb ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Unpacking cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Selecting previously unselected package libarchive13:amd64. Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Preparing to unpack .../4-libarchive13_3.4.0-2ubuntu1.5_amd64.deb ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Unpacking libarchive13:amd64 (3.4.0-2ubuntu1.5) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Selecting previously unselected package libjsoncpp1:amd64. Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Preparing to unpack .../5-libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Selecting previously unselected package librhash0:amd64. Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Preparing to unpack .../6-librhash0_1.3.9-1_amd64.deb ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Unpacking librhash0:amd64 (1.3.9-1) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Selecting previously unselected package cmake. Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Preparing to unpack .../7-cmake_3.16.3-1ubuntu1.20.04.1_amd64.deb ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Unpacking cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Setting up libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Setting up libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Setting up librhash0:amd64 (1.3.9-1) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Setting up cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Setting up libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.10) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Setting up libarchive13:amd64 (3.4.0-2ubuntu1.5) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Setting up cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Processing triggers for libc-bin (2.31-0ubuntu9.17) ... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Removing intermediate container 39c17d360d40 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": ---> 1853dcc2a6e9 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Step 3/5 : RUN git clone --depth 1 https://github.com/openbabel/openbabel.git Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": ---> Running in 22389c2eff53 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Cloning into 'openbabel'... Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Updating files: 38% (14261/37496) Updating files: 39% (14624/37496) Updating files: 40% (14999/37496) Updating files: 41% (15374/37496) Updating files: 42% (15749/37496) Updating files: 43% (16124/37496) Updating files: 44% (16499/37496) Updating files: 45% (16874/37496) Updating files: 46% (17249/37496) Updating files: 47% (17624/37496) Updating files: 48% (17999/37496) Updating files: 49% (18374/37496) Updating files: 50% (18748/37496) Updating files: 51% (19123/37496) Updating files: 52% (19498/37496) Updating files: 53% (19873/37496) Updating files: 54% (20248/37496) Updating files: 55% (20623/37496) Updating files: 56% (20998/37496) Updating files: 57% (21373/37496) Updating files: 58% (21748/37496) Updating files: 59% (22123/37496) Updating files: 60% (22498/37496) Updating files: 61% (22873/37496) Updating files: 62% (23248/37496) Updating files: 63% (23623/37496) Updating files: 64% (23998/37496) Updating files: 65% (24373/37496) Updating files: 66% (24748/37496) Updating files: 67% (25123/37496) Updating files: 68% (25498/37496) Updating files: 69% (25873/37496) Updating files: 70% (26248/37496) Updating files: 71% (26623/37496) Updating files: 72% (26998/37496) Updating files: 73% (27373/37496) Updating files: 74% (27748/37496) Updating files: 75% (28122/37496) Updating files: 76% (28497/37496) Updating files: 77% (28872/37496) Updating files: 78% (29247/37496) Updating files: 78% (29372/37496) Updating files: 79% (29622/37496) Updating files: 80% (29997/37496) Updating files: 81% (30372/37496) Updating files: 82% (30747/37496) Updating files: 83% (31122/37496) Updating files: 84% (31497/37496) Updating files: 85% (31872/37496) Updating files: 86% (32247/37496) Updating files: 87% (32622/37496) Updating files: 88% (32997/37496) Updating files: 89% (33372/37496) Updating files: 90% (33747/37496) Updating files: 91% (34122/37496) Updating files: 92% (34497/37496) Updating files: 93% (34872/37496) Updating files: 94% (35247/37496) Updating files: 95% (35622/37496) Updating files: 96% (35997/37496) Updating files: 97% (36372/37496) Updating files: 98% (36747/37496) Updating files: 99% (37122/37496) Updating files: 100% (37496/37496) Updating files: 100% (37496/37496), done. Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Removing intermediate container 22389c2eff53 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": ---> ed7c2a0bb05e Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Step 4/5 : COPY build.sh $SRC Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": ---> 0fd4ae020e19 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Step 5/5 : WORKDIR $SRC/openbabel Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": ---> Running in 75b5ddf80ee3 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Removing intermediate container 75b5ddf80ee3 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": ---> 42b4efd21d70 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Successfully built 42b4efd21d70 Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Successfully tagged gcr.io/oss-fuzz/openbabel:latest Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802": Successfully tagged us-central1-docker.pkg.dev/oss-fuzz/unsafe/openbabel:latest Finished Step #1 - "build-c22eea41-c83f-4b42-ad28-2c62d15d8802" Starting Step #3 - "push-image" Starting Step #2 - "srcmap" Step #3 - "push-image": Already have image (with digest): gcr.io/cloud-builders/docker Step #2 - "srcmap": Already have image: gcr.io/oss-fuzz/openbabel Step #3 - "push-image": Using default tag: latest Step #3 - "push-image": The push refers to repository [us-central1-docker.pkg.dev/oss-fuzz/unsafe/openbabel] Step #3 - "push-image": 437389cca9f5: Preparing Step #3 - "push-image": 61979b46ff44: Preparing Step #3 - "push-image": 0ed36d0063e6: Preparing Step #3 - "push-image": 34c12f97c0f2: Preparing Step #3 - "push-image": 9bb0f5f056f0: Preparing Step #3 - "push-image": 153ff26f5019: Preparing Step #3 - "push-image": b13c878e54d9: Preparing Step #3 - "push-image": 0e69986ae5b1: Preparing Step #3 - "push-image": 91fd73c83d9d: Preparing Step #3 - "push-image": d556d527abf6: Preparing Step #3 - "push-image": 49ac54c5e751: Preparing Step #3 - "push-image": 85f9dce656ad: Preparing Step #3 - "push-image": 3f20ed92a275: Preparing Step #3 - "push-image": 007870047230: Preparing Step #3 - "push-image": 8c4473038607: Preparing Step #3 - "push-image": 5252c1ed7f1d: Preparing Step #3 - "push-image": 0bf410416061: Preparing Step #3 - "push-image": b66cb3608e08: Preparing Step #3 - "push-image": af76d70930bc: Preparing Step #3 - "push-image": b469650740d5: Preparing Step #3 - "push-image": a7641a8f3f83: Preparing Step #3 - "push-image": 5e710c16cc24: Preparing Step #3 - "push-image": efc0848d51d7: Preparing Step #3 - "push-image": e861a863eb49: Preparing Step #3 - "push-image": ffe487b15d66: Preparing Step #3 - "push-image": 2eb4096d47e0: Preparing Step #3 - "push-image": a3386bc7ed1c: Preparing Step #3 - "push-image": 4e5e0aba9c89: Preparing Step #3 - "push-image": 15ef541a595b: Preparing Step #3 - "push-image": b9d08ad38f75: Preparing Step #3 - "push-image": e6b9aed9158f: Preparing Step #3 - "push-image": aa438d93b5a1: Preparing Step #3 - "push-image": a20661e6c504: Preparing Step #3 - "push-image": b4a41c10b14e: Preparing Step #3 - "push-image": f7c742595058: Preparing Step #3 - "push-image": 7c0b7a9de068: Preparing Step #3 - "push-image": 0a71441ee1ef: Preparing Step #3 - "push-image": 55c490a3e490: Preparing Step #3 - "push-image": 1a87bc153055: Preparing Step #3 - "push-image": deba86ee8a68: Preparing Step #3 - "push-image": 6ed98dd01466: Preparing Step #3 - "push-image": 3fe5e28cdca1: Preparing Step #3 - "push-image": d543b8cad89e: Preparing Step #3 - "push-image": 4e5e0aba9c89: Waiting Step #3 - "push-image": a3386bc7ed1c: Waiting Step #3 - "push-image": 3f20ed92a275: Waiting Step #3 - "push-image": a7641a8f3f83: Waiting Step #3 - "push-image": 0a71441ee1ef: Waiting Step #3 - "push-image": 007870047230: Waiting Step #3 - "push-image": b13c878e54d9: Waiting Step #3 - "push-image": 15ef541a595b: Waiting Step #3 - "push-image": 0e69986ae5b1: Waiting Step #3 - "push-image": 91fd73c83d9d: Waiting Step #3 - "push-image": 153ff26f5019: Waiting Step #3 - "push-image": b9d08ad38f75: Waiting Step #3 - "push-image": 8c4473038607: Waiting Step #3 - "push-image": 5252c1ed7f1d: Waiting Step #3 - "push-image": 5e710c16cc24: Waiting Step #3 - "push-image": ffe487b15d66: Waiting Step #3 - "push-image": efc0848d51d7: Waiting Step #3 - "push-image": 6ed98dd01466: Waiting Step #3 - "push-image": 2eb4096d47e0: Waiting Step #3 - "push-image": 3fe5e28cdca1: Waiting Step #3 - "push-image": 55c490a3e490: Waiting Step #3 - "push-image": 1a87bc153055: Waiting Step #3 - "push-image": 0bf410416061: Waiting Step #3 - "push-image": e861a863eb49: Waiting Step #3 - "push-image": b66cb3608e08: Waiting Step #3 - "push-image": 49ac54c5e751: Waiting Step #3 - "push-image": d556d527abf6: Waiting Step #3 - "push-image": 85f9dce656ad: Waiting Step #3 - "push-image": aa438d93b5a1: Waiting Step #3 - "push-image": af76d70930bc: Waiting Step #3 - "push-image": 7c0b7a9de068: Waiting Step #3 - "push-image": e6b9aed9158f: Waiting Step #3 - "push-image": f7c742595058: Waiting Step #3 - "push-image": b4a41c10b14e: Waiting Step #3 - "push-image": b469650740d5: Waiting Step #3 - "push-image": d543b8cad89e: Waiting Step #3 - "push-image": deba86ee8a68: Waiting Step #3 - "push-image": 9bb0f5f056f0: Layer already exists Step #3 - "push-image": 34c12f97c0f2: Layer already exists Step #3 - "push-image": 153ff26f5019: Layer already exists Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + SRCMAP=/tmp/file1xu8LN Step #2 - "srcmap": + echo '{}' Step #2 - "srcmap": + PATHS_TO_SCAN=/src Step #2 - "srcmap": + [[ c++ == \g\o ]] Step #2 - "srcmap": ++ find /src -name .git -type d Step #3 - "push-image": b13c878e54d9: Layer already exists Step #3 - "push-image": 0e69986ae5b1: Layer already exists Step #3 - "push-image": 91fd73c83d9d: Layer already exists Step #2 - "srcmap": + for DOT_GIT_DIR in $(find $PATHS_TO_SCAN -name ".git" -type d) Step #2 - "srcmap": ++ dirname /src/openbabel/.git Step #2 - "srcmap": + GIT_DIR=/src/openbabel Step #2 - "srcmap": + cd /src/openbabel Step #2 - "srcmap": ++ git config --get remote.origin.url Step #2 - "srcmap": + GIT_URL=https://github.com/openbabel/openbabel.git Step #2 - "srcmap": ++ git rev-parse HEAD Step #2 - "srcmap": + GIT_REV=889c350feb179b43aa43985799910149d4eaa2bc Step #2 - "srcmap": + jq_inplace /tmp/file1xu8LN '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "889c350feb179b43aa43985799910149d4eaa2bc" }' Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + F=/tmp/filecXF27a Step #2 - "srcmap": + cat /tmp/file1xu8LN Step #2 - "srcmap": + jq '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "889c350feb179b43aa43985799910149d4eaa2bc" }' Step #3 - "push-image": d556d527abf6: Layer already exists Step #2 - "srcmap": + mv /tmp/filecXF27a /tmp/file1xu8LN Step #2 - "srcmap": ++ find /src -name .svn -type d Step #3 - "push-image": 49ac54c5e751: Layer already exists Step #3 - "push-image": 3f20ed92a275: Layer already exists Step #2 - "srcmap": ++ find /src -name .hg -type d Step #3 - "push-image": 437389cca9f5: Pushed Step #3 - "push-image": 85f9dce656ad: Layer already exists Step #2 - "srcmap": + '[' '' '!=' '' ']' Step #2 - "srcmap": + cat /tmp/file1xu8LN Step #2 - "srcmap": + rm /tmp/file1xu8LN Step #3 - "push-image": 8c4473038607: Layer already exists Step #2 - "srcmap": { Step #2 - "srcmap": "/src/openbabel": { Step #2 - "srcmap": "type": "git", Step #2 - "srcmap": "url": "https://github.com/openbabel/openbabel.git", Step #2 - "srcmap": "rev": "889c350feb179b43aa43985799910149d4eaa2bc" Step #2 - "srcmap": } Step #2 - "srcmap": } Step #3 - "push-image": 5252c1ed7f1d: Layer already exists Step #3 - "push-image": 007870047230: Layer already exists Step #3 - "push-image": 0bf410416061: Layer already exists Step #3 - "push-image": b66cb3608e08: Layer already exists Step #3 - "push-image": af76d70930bc: Layer already exists Step #3 - "push-image": a7641a8f3f83: Layer already exists Step #3 - "push-image": b469650740d5: Layer already exists Step #3 - "push-image": 5e710c16cc24: Layer already exists Step #3 - "push-image": efc0848d51d7: Layer already exists Step #3 - "push-image": e861a863eb49: Layer already exists Step #3 - "push-image": ffe487b15d66: Layer already exists Step #3 - "push-image": 2eb4096d47e0: Layer already exists Step #3 - "push-image": a3386bc7ed1c: Layer already exists Step #3 - "push-image": 4e5e0aba9c89: Layer already exists Step #3 - "push-image": b9d08ad38f75: Layer already exists Step #3 - "push-image": 15ef541a595b: Layer already exists Step #3 - "push-image": e6b9aed9158f: Layer already exists Step #3 - "push-image": aa438d93b5a1: Layer already exists Step #3 - "push-image": b4a41c10b14e: Layer already exists Step #3 - "push-image": a20661e6c504: Layer already exists Finished Step #2 - "srcmap" Step #3 - "push-image": f7c742595058: Layer already exists Step #3 - "push-image": 7c0b7a9de068: Layer already exists Step #3 - "push-image": 0a71441ee1ef: Layer already exists Step #3 - "push-image": 1a87bc153055: Layer already exists Step #3 - "push-image": 55c490a3e490: Layer already exists Step #3 - "push-image": deba86ee8a68: Layer already exists Step #3 - "push-image": 3fe5e28cdca1: Layer already exists Step #3 - "push-image": 6ed98dd01466: Layer already exists Step #3 - "push-image": 0ed36d0063e6: Pushed Step #3 - "push-image": d543b8cad89e: Pushed Step #3 - "push-image": 61979b46ff44: Pushed Step #3 - "push-image": latest: digest: sha256:65ad9a42b1c15774f679a307377928616bc43377b07276db09de6b2da99c8e69 size: 9343 Finished Step #3 - "push-image" Starting Step #4 - "compile-afl-address-x86_64" Step #4 - "compile-afl-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #4 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #4 - "compile-afl-address-x86_64": vm.mmap_rnd_bits = 28 Step #4 - "compile-afl-address-x86_64": Copying precompiled AFL++ Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": AFL++ target compilation setup: Step #4 - "compile-afl-address-x86_64": AFL_IGNORE_UNKNOWN_ENVS=1 Step #4 - "compile-afl-address-x86_64": AFL_QUIET=1 Step #4 - "compile-afl-address-x86_64": AFL_IGNORE_PROBLEMS=1 Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": done. Step #4 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #4 - "compile-afl-address-x86_64": CC=/src/aflplusplus/afl-clang-fast Step #4 - "compile-afl-address-x86_64": CXX=/src/aflplusplus/afl-clang-fast++ Step #4 - "compile-afl-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope Step #4 - "compile-afl-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -stdlib=libc++ Step #4 - "compile-afl-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #4 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #4 - "compile-afl-address-x86_64": + mkdir build Step #4 - "compile-afl-address-x86_64": + cd build Step #4 - "compile-afl-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #4 - "compile-afl-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #4 - "compile-afl-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #4 - "compile-afl-address-x86_64": CMake. Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #4 - "compile-afl-address-x86_64": CMake that the project does not need compatibility with older versions. Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": -- The C compiler identification is Clang 18.1.8 Step #4 - "compile-afl-address-x86_64": -- The CXX compiler identification is Clang 18.1.8 Step #4 - "compile-afl-address-x86_64": -- Detecting C compiler ABI info Step #4 - "compile-afl-address-x86_64": -- Detecting C compiler ABI info - done Step #4 - "compile-afl-address-x86_64": -- Check for working C compiler: /src/aflplusplus/afl-clang-fast - skipped Step #4 - "compile-afl-address-x86_64": -- Detecting C compile features Step #4 - "compile-afl-address-x86_64": -- Detecting C compile features - done Step #4 - "compile-afl-address-x86_64": -- Detecting CXX compiler ABI info Step #4 - "compile-afl-address-x86_64": -- Detecting CXX compiler ABI info - done Step #4 - "compile-afl-address-x86_64": -- Check for working CXX compiler: /src/aflplusplus/afl-clang-fast++ - skipped Step #4 - "compile-afl-address-x86_64": -- Detecting CXX compile features Step #4 - "compile-afl-address-x86_64": -- Detecting CXX compile features - done Step #4 - "compile-afl-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #4 - "compile-afl-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #4 - "compile-afl-address-x86_64": of CMake. Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #4 - "compile-afl-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #4 - "compile-afl-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #4 - "compile-afl-address-x86_64": behavior and not rely on setting a policy to OLD. Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": -- Using included inchi library. Step #4 - "compile-afl-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #4 - "compile-afl-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #4 - "compile-afl-address-x86_64": libxml2 not found - disabling CML support! Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #4 - "compile-afl-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #4 - "compile-afl-address-x86_64": -- Looking for conio.h Step #4 - "compile-afl-address-x86_64": -- Looking for conio.h - not found Step #4 - "compile-afl-address-x86_64": -- Looking for sys/time.h Step #4 - "compile-afl-address-x86_64": -- Looking for sys/time.h - found Step #4 - "compile-afl-address-x86_64": -- Looking for time.h Step #4 - "compile-afl-address-x86_64": -- Looking for time.h - found Step #4 - "compile-afl-address-x86_64": -- Looking for strings.h Step #4 - "compile-afl-address-x86_64": -- Looking for strings.h - found Step #4 - "compile-afl-address-x86_64": -- Looking for regex.h Step #4 - "compile-afl-address-x86_64": -- Looking for regex.h - found Step #4 - "compile-afl-address-x86_64": -- Looking for C++ include sstream Step #4 - "compile-afl-address-x86_64": -- Looking for C++ include sstream - found Step #4 - "compile-afl-address-x86_64": -- Looking for rint Step #4 - "compile-afl-address-x86_64": -- Looking for rint - found Step #4 - "compile-afl-address-x86_64": -- Looking for snprintf Step #4 - "compile-afl-address-x86_64": -- Looking for snprintf - found Step #4 - "compile-afl-address-x86_64": -- Looking for sranddev Step #4 - "compile-afl-address-x86_64": -- Looking for sranddev - not found Step #4 - "compile-afl-address-x86_64": -- Looking for strcasecmp Step #4 - "compile-afl-address-x86_64": -- Looking for strcasecmp - found Step #4 - "compile-afl-address-x86_64": -- Looking for strncasecmp Step #4 - "compile-afl-address-x86_64": -- Looking for strncasecmp - found Step #4 - "compile-afl-address-x86_64": -- Looking for xdrstdio_create Step #4 - "compile-afl-address-x86_64": -- Looking for xdrstdio_create - found Step #4 - "compile-afl-address-x86_64": -- Looking for dlopen in dl Step #4 - "compile-afl-address-x86_64": -- Looking for dlopen in dl - found Step #4 - "compile-afl-address-x86_64": -- Looking for sys/types.h Step #4 - "compile-afl-address-x86_64": -- Looking for sys/types.h - found Step #4 - "compile-afl-address-x86_64": -- Looking for stdint.h Step #4 - "compile-afl-address-x86_64": -- Looking for stdint.h - found Step #4 - "compile-afl-address-x86_64": -- Looking for stddef.h Step #4 - "compile-afl-address-x86_64": -- Looking for stddef.h - found Step #4 - "compile-afl-address-x86_64": -- Check size of clock_t Step #4 - "compile-afl-address-x86_64": -- Check size of clock_t - done Step #4 - "compile-afl-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #4 - "compile-afl-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #4 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #4 - "compile-afl-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #4 - "compile-afl-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #4 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #4 - "compile-afl-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #4 - "compile-afl-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #4 - "compile-afl-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #4 - "compile-afl-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #4 - "compile-afl-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #4 - "compile-afl-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #4 - "compile-afl-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #4 - "compile-afl-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #4 - "compile-afl-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #4 - "compile-afl-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #4 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #4 - "compile-afl-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #4 - "compile-afl-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #4 - "compile-afl-address-x86_64": -- Found Threads: TRUE Step #4 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #4 - "compile-afl-address-x86_64": -- Looking for getopt Step #4 - "compile-afl-address-x86_64": -- Looking for getopt - found Step #4 - "compile-afl-address-x86_64": -- GUI will not be built Step #4 - "compile-afl-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #4 - "compile-afl-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #4 - "compile-afl-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #4 - "compile-afl-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": Call Stack (most recent call first): Step #4 - "compile-afl-address-x86_64": test/CMakeLists.txt:233 (include) Step #4 - "compile-afl-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.10.14") Step #4 - "compile-afl-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #4 - "compile-afl-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #4 - "compile-afl-address-x86_64": CMake. Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #4 - "compile-afl-address-x86_64": CMake that the project does not need compatibility with older versions. Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": -- Configuring done (6.1s) Step #4 - "compile-afl-address-x86_64": -- Generating done (0.1s) Step #4 - "compile-afl-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #4 - "compile-afl-address-x86_64": ++ nproc Step #4 - "compile-afl-address-x86_64": + make -j 32 Step #4 - "compile-afl-address-x86_64": [ 0%] Generating atomtyp.h Step #4 - "compile-afl-address-x86_64": [ 0%] Generating bondtyp.h Step #4 - "compile-afl-address-x86_64": [ 1%] Generating phmodeldata.h Step #4 - "compile-afl-address-x86_64": [ 1%] Generating resdata.h Step #4 - "compile-afl-address-x86_64": [ 1%] Generating torlib.h Step #4 - "compile-afl-address-x86_64": [ 1%] Generating atomizationenergies.h Step #4 - "compile-afl-address-x86_64": [ 1%] Generating types.h Step #4 - "compile-afl-address-x86_64": [ 2%] Generating spacegroups.h Step #4 - "compile-afl-address-x86_64": [ 2%] Generating ringtyp.h Step #4 - 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"compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #4 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #4 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #4 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #4 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 82 | _ival=nullptr; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here/src/openbabel/src/atom.cpp Step #4 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< f:826or inte:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": ger values \deprecated Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 826 | In file included from /src/openbabel/src/forcefield.cpp:34: Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64":  if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECAT/src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #4 - "compile-afl-address-x86_64": E 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": D_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1144 | /src/openbabel/src/forcefield.cpp:482:31 : | warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations]| IsNearZero(v2.le Step #4 - "compile-afl-address-x86_64": ng482 | rab = OBFortcehFi()eld, :1.:0VectorLeengthD-3er)iv)a {t Step #4 - "compile-afl-address-x86_64": ive(| da, db); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64":  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 1523 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:/src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: 197expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": : 337 | #d:efine OB_DEPRECAT ED [[denote: precated]] Step #4 - "compile-afl-address-x86_64": 'IsNearZero' has been explicitly marked deprecated here|  ^ Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 1539 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 1572 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 359 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 361 | else if (bond2 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 430 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 432 | else if (bond2 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | O/src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": B/src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": _DEPRECATED_MSG("Use vector3::/src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:/src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 434 | /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | # define OB_DEPRECATED_MSG(msg els) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": e if (bond3 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 450 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 452 | else if (bond2 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 454 | else if (bond3 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 469 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 471 | else if (bond2 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 473 | else if (bond3 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:/src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 273/src/openbabel/include/openbabel/rotor.h:5: note: :633:5: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64":  273note: 'SetFixAtoms' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": | 633 | OB OB_DEPRECA_DEPRETED_MSG("SeeCATE SetFiD_MSxedBoG("Usnds()") Step #4 - "compile-afl-address-x86_64": | e vec ^ Step #4 - "compile-afl-address-x86_64": t/src/openbabel/build/include/openbabel/babelconfig.h:38:38or3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": | :  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 38 | #define OB_DEPRECATED_M: note: expanded from macro 'OB_DEPRECATED_MSG'SG(msg) Step #4 - "compile-afl-address-x86_64": [38[deprecate | d(m sg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[depre/src/openbabel/src/builder.cpp:494:23cated(:ms g)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 494 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 496 | else if (bond2 == VZero)/src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds Step #4 - "compile-afl-address-x86_64": |  ^() Step #4 - "compile-afl-address-x86_64": ") Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: |  note: ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: 'operator==' has been explicitly marked deprecated hereexpanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": 273 | 38 | #de fine OB_DEPRECATED_ OBM_SDG(msg) [[deprecaEted(PmsREg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": CATED_MSG("Use ve/src/openbabel/src/forcefield.cpp:1635ct:32:or 3::Iwarning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1635 | combinations sApprox(*=) r otiorn->stead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": Ge/src/openbabel/build/include/openbabel/babelconfig.h:38tResolution:()38: .size(); Step #4 - "compile-afl-address-x86_64": note:  | expanded from macro 'OB_DEPRECATED_MSG' ^ Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5:  38 | note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | #define OB_DEPRECATED_MSG(msg) [[deprecatOB_DEPRECAed(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": TED_MSG("See GetTorsionValues(/src/openbabel/src/builder.cpp:498:28: )") Step #4 - "compile-afl-address-x86_64": |  ^warning: Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": 38 | # 498 | define OB _D EP RE CA TE D_ MS G(emslg) se if (b[[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": | o ^ Step #4 - "compile-afl-address-x86_64": nd3 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.")/src/openbabel/src/forcefield.cpp: Step #4 - "compile-afl-address-x86_64": 1685:43:|   ^warning: Step #4 - "compile-afl-address-x86_64": 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64":  1685 | /src/openbabel/build/include/openbabel/babelconfig.h f:or38 (:un38si:g ned note: int expanded from macro 'OB_DEPRECATED_MSG'j = Step #4 - "compile-afl-address-x86_64": 0; j < r38ot | or -> Ge tR es#defolution().sizeine (); j++) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | O B OB_DEPRECATED_MSG("See GetT_DEPRECATED_MSG(msg) orsionValues[[deprecated(msg()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": )]] Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: |  ^ Step #4 - "compile-afl-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #de/src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 514 | fine OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define O1719 | for (unsigned iB_DEPRECATED_MSG(msg) nt j = 0; j < rotor->GetResolution().size(); j++) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MS[[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": G (|  ^ Step #4 - "compile-afl-address-x86_64": msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 516 | else if (bond2 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 518 | else if (bond3 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 520 | else if (bond4 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 533 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 535 | else if (bond2 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 537 | else if (bond3 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 539 | else if (bond4 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 564 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 566 | else if (bond2 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 568 | else if (bond3 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 570 | else if (bond4 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 572 | else if (bond5 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 660 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2420 | if (IsNearZero(scale)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 718 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1|  ^.0 Step #4 - "compile-afl-address-x86_64": e-3)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG(" OB_DUsEPRECATEe IsApprD_ox() insteaMd") Step #4 - "compile-afl-address-x86_64": | SG("Use ^ Step #4 - "compile-afl-address-x86_64": v/src/openbabel/build/include/openbabel/babelconfig.h:38:38:e ctor3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64":  expanded from macro 'OB_DEPRECATED_MSG'38 | Step #4 - "compile-afl-address-x86_64": #38d | e f ine OB_DEPRECATED_MSG(msg) [[deprecated(ms g )]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 720 | else if (bond2 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_ DEOPBR_EDCEAPTREEDC_AMTSEGD(_mMsSgG)("Use [v[edcetporre3c:a:tIesdA(pmpsrgo)x](]) Step #4 - "compile-afl-address-x86_64": i n| st ^e Step #4 - "compile-afl-address-x86_64": ad.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3735 | if (IsNearZero(length)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3802 | if (IsNearZero(length)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero/src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1427 | (faif (bond1 == VZero) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_bs(theta - M_PI))) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2788 | if (atom->GetVector() != VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2805 | if (!hasY && !IsNearZero(atom->y())) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp| :2826 ^ Step #4 - "compile-afl-address-x86_64": :/src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 19723: warning:  | OB_DEPR'IsNearZero' is deprecated [-Wdeprecated-declarations]ECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 |  Step #4 - "compile-afl-address-x86_64": 2826 | # de if (!hasX &&fin !IsNee OB_DEPREarZCAerTED [[deporecated]] Step #4 - "compile-afl-address-x86_64": ( |  ^atom-> Step #4 - "compile-afl-address-x86_64": x())) Step #4 - "compile-afl-address-x86_64": | /src/openbabel/src/forcefield.cpp:4285:29:  ^warning:  Step #4 - "compile-afl-address-x86_64": 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4285 | if (IsNea/src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated hererZero(l_ij) | Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^| IsNearZe Step #4 - "compile-afl-address-x86_64": ro(l_jk) || IsNearZero(l_kl) ) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h/src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | :37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECA37 | #deTEDfine OB_ [[deprDEPREecated]]C Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": ATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": | /src/openbabel/src/forcefield.cpp:4285: ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 282849: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64":  | if (!hasY && !IsNearZero(atom->y())) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3252 | if ((*ringit)->PathSize() == 5) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:3274:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3274 | else if ((*ringit)->PathSize() == 6) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #4 - "compile-afl-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #4 - "compile-afl-address-x86_64": 2 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #4 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #4 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #4 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #4 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #4 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #4 - "compile-afl-address-x86_64": 3 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #4 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #4 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #4 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #4 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #4 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #4 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #4 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 452 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 443 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 355 | rotor->SetDelta(delta); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #4 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #4 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #4 - "compile-afl-address-x86_64": 3 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #4 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589[ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #4 - "compile-afl-address-x86_64": :9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 589 | gd->GetOriginVector(origin); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #4 - "compile-afl-address-x86_64": 5 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #4 - "compile-afl-address-x86_64": 34 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #4 - "compile-afl-address-x86_64": 310 | else if (vs[0][0] == '2') Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #4 - "compile-afl-address-x86_64": 51 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #4 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #4 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #4 - "compile-afl-address-x86_64": 911 | switch(pRD->ReactionType) Step #4 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #4 - "compile-afl-address-x86_64": 990 | switch(pRD->ReactionType) Step #4 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #4 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #4 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #4 - "compile-afl-address-x86_64": 3 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #4 - "compile-afl-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #4 - "compile-afl-address-x86_64": |  ~~~~ ^~~~ Step #4 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #4 - "compile-afl-address-x86_64": 9 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 275 | gd->GetOriginVector(origin); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #4 - "compile-afl-address-x86_64": 158 | switch (chirality) { Step #4 - "compile-afl-address-x86_64": |  ^~~~~~~~~ Step #4 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #4 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #4 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #4 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #4 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #4 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #4 - "compile-afl-address-x86_64": 2 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #4 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #4 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #4 - "compile-afl-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #4 - "compile-afl-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #4 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #4 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #4 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #4 - "compile-afl-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #4 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #4 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #4 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #4 - "compile-afl-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #4 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #4 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #4 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #4 - "compile-afl-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #4 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #4 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #4 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #4 - "compile-afl-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #4 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #4 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #4 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #4 - "compile-afl-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #4 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #4 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #4 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #4 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #4 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #4 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #4 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #4 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #4 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #4 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #4 - "compile-afl-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #4 - "compile-afl-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #4 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #4 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #4 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #4 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #4 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #4 - "compile-afl-address-x86_64": 2 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 1523 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #4 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #4 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #4 - "compile-afl-address-x86_64": 6 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #4 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #4 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #4 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #4 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #4 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #4 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #4 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #4 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #4 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #4 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #4 - "compile-afl-address-x86_64": 2 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #4 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #4 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #4 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #4 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #4 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #4 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #4 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #4 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #4 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #4 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #4 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #4 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #4 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #4 - "compile-afl-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #4 - "compile-afl-address-x86_64": |  ~~~~~~~~~~~ ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #4 - "compile-afl-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #4 - "compile-afl-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 9 warnings generated. Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": 4 warnings generated. Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": 2 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #4 - "compile-afl-address-x86_64": [ 75%] Built target openbabel Step #4 - "compile-afl-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #4 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #4 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #4 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #4 - "compile-afl-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #4 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #4 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #4 - "compile-afl-address-x86_64": 255 | // / \  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #4 - "compile-afl-address-x86_64": 270 | // / \  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #4 - "compile-afl-address-x86_64": 285 | // \  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #4 - "compile-afl-address-x86_64": 287 | // \  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #4 - "compile-afl-address-x86_64": 310 | // \  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #4 - "compile-afl-address-x86_64": 432 | // \  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[de/src/openbabel/test/stereotest.cpp:102:13: pwarning: rec5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #4 - "compile-afl-address-x86_64": a 102 | t sewitch (und(msg)]i] Step #4 - "compile-afl-address-x86_64": t |  ^ Step #4 - "compile-afl-address-x86_64": s.at(i).type) { Step #4 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #4 - "compile-afl-address-x86_64": 132 | switch (units.at(i).type) { Step #4 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #4 - "compile-afl-address-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #4 - "compile-afl-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #4 - "compile-afl-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #4 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #4 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #4 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #4 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #4 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #4 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #4 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 92%] Linking CXX executable ../bin/fuzz_convert Step #4 - "compile-afl-address-x86_64": [ 92%] Linking CXX executable ../bin/obabel Step #4 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #4 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #4 - "compile-afl-address-x86_64": 3 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #4 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #4 - "compile-afl-address-x86_64": [ 93%] Built target fuzz_obconversion_smiles Step #4 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #4 - "compile-afl-address-x86_64": [ 93%] Built target fuzz_obconversion_sdf Step #4 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #4 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #4 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #4 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #4 - "compile-afl-address-x86_64": [ 95%] Built target roundtrip Step #4 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #4 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #4 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #4 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #4 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #4 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #4 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #4 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #4 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 98%] Built target fuzz_convert Step #4 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #4 - "compile-afl-address-x86_64": [ 98%] Built target obabel Step #4 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #4 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #4 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 190 | x = m2.Get( i, j ); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 6 warnings generated. Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 6 warnings generated. Step #4 - "compile-afl-address-x86_64": 17 warnings generated. Step #4 - "compile-afl-address-x86_64": 2 warnings generated. Step #4 - "compile-afl-address-x86_64": 24 warnings generated. Step #4 - "compile-afl-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #4 - "compile-afl-address-x86_64": [100%] Built target test_runner Step #4 - "compile-afl-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/afl-address-x86_64/ Finished Step #4 - "compile-afl-address-x86_64" Starting Step #5 - "build-check-afl-address-x86_64" Step #5 - "build-check-afl-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #5 - "build-check-afl-address-x86_64": Unable to find image 'gcr.io/oss-fuzz-base/base-runner:latest' locally Step #5 - "build-check-afl-address-x86_64": latest: Pulling from oss-fuzz-base/base-runner Step #5 - "build-check-afl-address-x86_64": b549f31133a9: Already exists Step #5 - "build-check-afl-address-x86_64": 7b954c5d6182: Already exists Step #5 - "build-check-afl-address-x86_64": 42697d346cd9: Already exists Step #5 - "build-check-afl-address-x86_64": 09f77b3bad54: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 5d92ce38937d: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 971e09a4a99a: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": a3be303a7a23: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 29f9e5c9e821: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 3c23c5d6256f: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 964dd7552db2: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 325a1ce7fc52: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": ea4bf89a09a5: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": eebd7cefcdb0: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 4aaef292ee4a: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 9595f85751c3: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 89fc4dc16b08: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 267fec2025d2: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 366211f092ab: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": c6dfd4a7ded3: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 9f882fe06bac: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 00beec93eae6: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 69cb1222c609: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": f9a64467344b: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 488a80725a27: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 5a5751d3dcf8: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 31d07bbf8abb: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 964dd7552db2: Waiting Step #5 - "build-check-afl-address-x86_64": 325a1ce7fc52: Waiting Step #5 - "build-check-afl-address-x86_64": ea4bf89a09a5: Waiting Step #5 - "build-check-afl-address-x86_64": c6dfd4a7ded3: Waiting Step #5 - "build-check-afl-address-x86_64": a3be303a7a23: Waiting Step #5 - "build-check-afl-address-x86_64": eebd7cefcdb0: Waiting Step #5 - "build-check-afl-address-x86_64": 9f882fe06bac: Waiting Step #5 - "build-check-afl-address-x86_64": 4aaef292ee4a: Waiting Step #5 - "build-check-afl-address-x86_64": 00beec93eae6: Waiting Step #5 - "build-check-afl-address-x86_64": 29f9e5c9e821: Waiting Step #5 - "build-check-afl-address-x86_64": 69cb1222c609: Waiting Step #5 - "build-check-afl-address-x86_64": 3c23c5d6256f: Waiting Step #5 - "build-check-afl-address-x86_64": 366211f092ab: Waiting Step #5 - "build-check-afl-address-x86_64": f9a64467344b: Waiting Step #5 - "build-check-afl-address-x86_64": 31d07bbf8abb: Waiting Step #5 - "build-check-afl-address-x86_64": 488a80725a27: Waiting Step #5 - "build-check-afl-address-x86_64": 9595f85751c3: Waiting Step #5 - "build-check-afl-address-x86_64": 89fc4dc16b08: Waiting Step #5 - "build-check-afl-address-x86_64": 5a5751d3dcf8: Waiting Step #5 - "build-check-afl-address-x86_64": 267fec2025d2: Waiting Step #5 - "build-check-afl-address-x86_64": 971e09a4a99a: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 971e09a4a99a: Download complete Step #5 - "build-check-afl-address-x86_64": 09f77b3bad54: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 09f77b3bad54: Download complete Step #5 - "build-check-afl-address-x86_64": 5d92ce38937d: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 5d92ce38937d: Download complete Step #5 - "build-check-afl-address-x86_64": 29f9e5c9e821: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 29f9e5c9e821: Download complete Step #5 - "build-check-afl-address-x86_64": 09f77b3bad54: Pull complete Step #5 - "build-check-afl-address-x86_64": a3be303a7a23: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": a3be303a7a23: Download complete Step #5 - "build-check-afl-address-x86_64": 325a1ce7fc52: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 325a1ce7fc52: Download complete Step #5 - "build-check-afl-address-x86_64": 964dd7552db2: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 964dd7552db2: Download complete Step #5 - "build-check-afl-address-x86_64": 5d92ce38937d: Pull complete Step #5 - "build-check-afl-address-x86_64": ea4bf89a09a5: Download complete Step #5 - "build-check-afl-address-x86_64": 971e09a4a99a: Pull complete Step #5 - "build-check-afl-address-x86_64": 3c23c5d6256f: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 3c23c5d6256f: Download complete Step #5 - "build-check-afl-address-x86_64": a3be303a7a23: Pull complete Step #5 - "build-check-afl-address-x86_64": 9595f85751c3: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 9595f85751c3: Download complete Step #5 - "build-check-afl-address-x86_64": 4aaef292ee4a: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 4aaef292ee4a: Download complete Step #5 - "build-check-afl-address-x86_64": 29f9e5c9e821: Pull complete Step #5 - "build-check-afl-address-x86_64": 89fc4dc16b08: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 89fc4dc16b08: Download complete Step #5 - "build-check-afl-address-x86_64": eebd7cefcdb0: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": eebd7cefcdb0: Download complete Step #5 - "build-check-afl-address-x86_64": 366211f092ab: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 366211f092ab: Download complete Step #5 - "build-check-afl-address-x86_64": 267fec2025d2: Download complete Step #5 - "build-check-afl-address-x86_64": 9f882fe06bac: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 9f882fe06bac: Download complete Step #5 - "build-check-afl-address-x86_64": 00beec93eae6: Download complete Step #5 - "build-check-afl-address-x86_64": 69cb1222c609: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 69cb1222c609: Download complete Step #5 - "build-check-afl-address-x86_64": f9a64467344b: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": f9a64467344b: Download complete Step #5 - "build-check-afl-address-x86_64": 488a80725a27: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 488a80725a27: Download complete Step #5 - "build-check-afl-address-x86_64": 3c23c5d6256f: Pull complete Step #5 - "build-check-afl-address-x86_64": 5a5751d3dcf8: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 5a5751d3dcf8: Download complete Step #5 - "build-check-afl-address-x86_64": 31d07bbf8abb: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 31d07bbf8abb: Download complete Step #5 - "build-check-afl-address-x86_64": 964dd7552db2: Pull complete Step #5 - "build-check-afl-address-x86_64": c6dfd4a7ded3: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": c6dfd4a7ded3: Download complete Step #5 - "build-check-afl-address-x86_64": 325a1ce7fc52: Pull complete Step #5 - "build-check-afl-address-x86_64": ea4bf89a09a5: Pull complete Step #5 - "build-check-afl-address-x86_64": eebd7cefcdb0: Pull complete Step #5 - "build-check-afl-address-x86_64": 4aaef292ee4a: Pull complete Step #5 - "build-check-afl-address-x86_64": 9595f85751c3: Pull complete Step #5 - "build-check-afl-address-x86_64": 89fc4dc16b08: Pull complete Step #5 - "build-check-afl-address-x86_64": 267fec2025d2: Pull complete Step #5 - "build-check-afl-address-x86_64": 366211f092ab: Pull complete Step #5 - "build-check-afl-address-x86_64": c6dfd4a7ded3: Pull complete Step #5 - "build-check-afl-address-x86_64": 9f882fe06bac: Pull complete Step #5 - "build-check-afl-address-x86_64": 00beec93eae6: Pull complete Step #5 - "build-check-afl-address-x86_64": 69cb1222c609: Pull complete Step #5 - "build-check-afl-address-x86_64": f9a64467344b: Pull complete Step #5 - "build-check-afl-address-x86_64": 488a80725a27: Pull complete Step #5 - "build-check-afl-address-x86_64": 5a5751d3dcf8: Pull complete Step #5 - "build-check-afl-address-x86_64": 31d07bbf8abb: Pull complete Step #5 - "build-check-afl-address-x86_64": Digest: sha256:629a4ee90356753711fb3d27424bb77fd58375f74b0910eaf6d1783d7c0a1c81 Step #5 - "build-check-afl-address-x86_64": Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-runner:latest Step #5 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpbpo5vclh/fuzz_obconversion_sdf Step #5 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpbpo5vclh/fuzz_obconversion_smiles Step #5 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpbpo5vclh/fuzz_convert Finished Step #5 - "build-check-afl-address-x86_64" Starting Step #6 Step #6: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #6 Starting Step #7 Step #7: Already have image: gcr.io/oss-fuzz/openbabel Step #7: adding: SanitizerCoverageLTO.so (deflated 70%) Step #7: adding: SanitizerCoveragePCGUARD.so (deflated 70%) Step #7: adding: afl-addseeds (deflated 56%) Step #7: adding: afl-analyze (deflated 54%) Step #7: adding: afl-as (deflated 63%) Step #7: adding: afl-c++ (deflated 57%) Step #7: adding: afl-c++.8 (deflated 56%) Step #7: adding: afl-cc (deflated 57%) Step #7: adding: afl-cc.8 (deflated 56%) Step #7: adding: afl-clang (deflated 57%) Step #7: adding: afl-clang++ (deflated 57%) Step #7: adding: afl-clang-fast (deflated 57%) Step #7: adding: afl-clang-fast++ (deflated 57%) Step #7: adding: afl-clang-fast++.8 (deflated 56%) Step #7: adding: afl-clang-fast.8 (deflated 56%) Step #7: adding: afl-clang-lto (deflated 57%) Step #7: adding: afl-clang-lto++ (deflated 57%) Step #7: adding: afl-clang-lto++.8 (deflated 56%) Step #7: adding: afl-clang-lto.8 (deflated 56%) Step #7: adding: afl-cmin (deflated 70%) Step #7: adding: afl-cmin.bash (deflated 65%) Step #7: adding: afl-compiler-rt-32.o (deflated 56%) Step #7: adding: afl-compiler-rt-64.o (deflated 67%) Step #7: adding: afl-compiler-rt.o (deflated 67%) Step #7: adding: afl-fuzz (deflated 55%) Step #7: adding: afl-g++ (deflated 57%) Step #7: adding: afl-gcc (deflated 57%) Step #7: adding: afl-gotcpu (deflated 61%) Step #7: adding: afl-ld-lto (deflated 63%) Step #7: adding: afl-llvm-dict2file.so (deflated 69%) Step #7: adding: afl-llvm-lto-instrumentlist.so (deflated 70%) Step #7: adding: afl-llvm-pass.so (deflated 68%) Step #7: adding: afl-llvm-rt-lto-32.o (deflated 21%) Step #7: adding: afl-llvm-rt-lto-64.o (deflated 20%) Step #7: adding: afl-llvm-rt-lto.o (deflated 20%) Step #7: adding: afl-lto (deflated 57%) Step #7: adding: afl-lto++ (deflated 57%) Step #7: adding: afl-lto++.8 (deflated 56%) Step #7: adding: afl-lto.8 (deflated 56%) Step #7: adding: afl-persistent-config (deflated 60%) Step #7: adding: afl-plot (deflated 65%) Step #7: adding: afl-showmap (deflated 55%) Step #7: adding: afl-system-config (deflated 63%) Step #7: adding: afl-tmin (deflated 54%) Step #7: adding: afl-whatsup (deflated 69%) Step #7: adding: afl-wine-trace (deflated 70%) Step #7: adding: afl_options.txt (deflated 20%) Step #7: adding: cmplog-instructions-pass.so (deflated 69%) Step #7: adding: cmplog-routines-pass.so (deflated 70%) Step #7: adding: cmplog-switches-pass.so (deflated 69%) Step #7: adding: compare-transform-pass.so (deflated 69%) Step #7: adding: dynamic_list.txt (deflated 76%) Step #7: adding: fuzz_convert (deflated 66%) Step #7: adding: fuzz_obconversion_sdf (deflated 66%) Step #7: adding: fuzz_obconversion_smiles (deflated 66%) Step #7: adding: libAFLDriver.a (deflated 64%) Step #7: adding: libAFLQemuDriver.a (deflated 64%) Step #7: adding: llvm-symbolizer (deflated 66%) Step #7: adding: split-compares-pass.so (deflated 68%) Step #7: adding: split-switches-pass.so (deflated 69%) Finished Step #7 Starting Step #8 Step #8: Pulling image: gcr.io/oss-fuzz-base/uploader Step #8: Using default tag: latest Step #8: latest: Pulling from oss-fuzz-base/uploader Step #8: c62795f78da9: Pulling fs layer Step #8: d4fceeeb758e: Pulling fs layer Step #8: 5c9125a401ae: Pulling fs layer Step #8: 0062f774e994: Pulling fs layer Step #8: 6b33fd031fac: Pulling fs layer Step #8: 7eb39101e508: Pulling fs layer Step #8: 89257482f398: Pulling fs layer Step #8: 0062f774e994: Waiting Step #8: 6b33fd031fac: Waiting Step #8: 89257482f398: Waiting Step #8: 7eb39101e508: Waiting Step #8: 5c9125a401ae: Verifying Checksum Step #8: 5c9125a401ae: Download complete Step #8: d4fceeeb758e: Verifying Checksum Step #8: d4fceeeb758e: Download complete Step #8: 0062f774e994: Verifying Checksum Step #8: 0062f774e994: Download complete Step #8: 6b33fd031fac: Verifying Checksum Step #8: 6b33fd031fac: Download complete Step #8: c62795f78da9: Verifying Checksum Step #8: c62795f78da9: Download complete Step #8: 89257482f398: Verifying Checksum Step #8: 89257482f398: Download complete Step #8: 7eb39101e508: Verifying Checksum Step #8: 7eb39101e508: Download complete Step #8: c62795f78da9: Pull complete Step #8: d4fceeeb758e: Pull complete Step #8: 5c9125a401ae: Pull complete Step #8: 0062f774e994: Pull complete Step #8: 6b33fd031fac: Pull complete Step #8: 7eb39101e508: Pull complete Step #8: 89257482f398: Pull complete Step #8: Digest: sha256:5717ba63d13b5515063e2a6ccad09fb5bf32a86c8e0798a363d81c2be522e411 Step #8: Status: Downloaded newer image for gcr.io/oss-fuzz-base/uploader:latest Step #8: gcr.io/oss-fuzz-base/uploader:latest Step #8: % Total % Received % Xferd Average Speed Time Time Time Current Step #8: Dload Upload Total Spent Left Speed Step #8: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 933 --:--:-- --:--:-- --:--:-- 935 Finished Step #8 Starting Step #9 Step #9: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #9: % Total % Received % Xferd Average Speed Time Time Time Current Step #9: Dload Upload Total Spent Left Speed Step #9: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 90.2M 0 0 100 90.2M 0 153M --:--:-- --:--:-- --:--:-- 153M 100 90.2M 0 0 100 90.2M 0 153M --:--:-- --:--:-- --:--:-- 153M Finished Step #9 Starting Step #10 Step #10: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #10: % Total % Received % Xferd Average Speed Time Time Time Current Step #10: Dload Upload Total Spent Left Speed Step #10: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 227 --:--:-- --:--:-- --:--:-- 228 Finished Step #10 Starting Step #11 Step #11: Already have image (with digest): gcr.io/cloud-builders/curl Step #11: % Total % Received % Xferd Average Speed Time Time Time Current Step #11: Dload Upload Total Spent Left Speed Step #11: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 142 --:--:-- --:--:-- --:--:-- 143 Finished Step #11 Starting Step #12 Step #12: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #12 Starting Step #13 - "compile-honggfuzz-address-x86_64" Step #13 - "compile-honggfuzz-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #13 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #13 - "compile-honggfuzz-address-x86_64": vm.mmap_rnd_bits = 28 Step #13 - "compile-honggfuzz-address-x86_64": Skipping compilation; using precompiled honggfuzz Step #13 - "compile-honggfuzz-address-x86_64": done. Step #13 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #13 - "compile-honggfuzz-address-x86_64": CC=clang Step #13 - "compile-honggfuzz-address-x86_64": CXX=clang++ Step #13 - "compile-honggfuzz-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp Step #13 - "compile-honggfuzz-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp -stdlib=libc++ Step #13 - "compile-honggfuzz-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #13 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #13 - "compile-honggfuzz-address-x86_64": + mkdir build Step #13 - "compile-honggfuzz-address-x86_64": + cd build Step #13 - "compile-honggfuzz-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #13 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #13 - "compile-honggfuzz-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #13 - "compile-honggfuzz-address-x86_64": CMake. Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #13 - "compile-honggfuzz-address-x86_64": CMake that the project does not need compatibility with older versions. Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": -- The C compiler identification is Clang 18.1.8 Step #13 - "compile-honggfuzz-address-x86_64": -- The CXX compiler identification is Clang 18.1.8 Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting C compiler ABI info Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting C compiler ABI info - done Step #13 - "compile-honggfuzz-address-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting C compile features Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting C compile features - done Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compiler ABI info Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compiler ABI info - done Step #13 - "compile-honggfuzz-address-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compile features Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compile features - done Step #13 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #13 - "compile-honggfuzz-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #13 - "compile-honggfuzz-address-x86_64": of CMake. Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #13 - "compile-honggfuzz-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #13 - "compile-honggfuzz-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #13 - "compile-honggfuzz-address-x86_64": behavior and not rely on setting a policy to OLD. Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": -- Using included inchi library. Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #13 - "compile-honggfuzz-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #13 - "compile-honggfuzz-address-x86_64": libxml2 not found - disabling CML support! Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for conio.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for conio.h - not found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for sys/time.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for sys/time.h - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for time.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for time.h - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for strings.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for strings.h - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for regex.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for regex.h - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for C++ include sstream Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for C++ include sstream - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for rint Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for rint - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for snprintf Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for snprintf - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for sranddev Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for sranddev - not found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for strcasecmp Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for strcasecmp - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for strncasecmp Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for strncasecmp - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for xdrstdio_create Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for xdrstdio_create - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for dlopen in dl Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for dlopen in dl - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for sys/types.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for sys/types.h - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for stdint.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for stdint.h - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for stddef.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for stddef.h - found Step #13 - "compile-honggfuzz-address-x86_64": -- Check size of clock_t Step #13 - "compile-honggfuzz-address-x86_64": -- Check size of clock_t - done Step #13 - "compile-honggfuzz-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #13 - "compile-honggfuzz-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #13 - "compile-honggfuzz-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #13 - "compile-honggfuzz-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #13 - "compile-honggfuzz-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #13 - "compile-honggfuzz-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #13 - "compile-honggfuzz-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #13 - "compile-honggfuzz-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #13 - "compile-honggfuzz-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #13 - "compile-honggfuzz-address-x86_64": -- Found Threads: TRUE Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for getopt Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for getopt - found Step #13 - "compile-honggfuzz-address-x86_64": -- GUI will not be built Step #13 - "compile-honggfuzz-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #13 - "compile-honggfuzz-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #13 - "compile-honggfuzz-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #13 - "compile-honggfuzz-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64": Call Stack (most recent call first): Step #13 - "compile-honggfuzz-address-x86_64": test/CMakeLists.txt:233 (include) Step #13 - "compile-honggfuzz-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.10.14") Step #13 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #13 - "compile-honggfuzz-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #13 - "compile-honggfuzz-address-x86_64": CMake. Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #13 - "compile-honggfuzz-address-x86_64": CMake that the project does not need compatibility with older versions. Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": -- Configuring done (6.0s) Step #13 - "compile-honggfuzz-address-x86_64": -- Generating done (0.1s) Step #13 - "compile-honggfuzz-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #13 - "compile-honggfuzz-address-x86_64": ++ nproc Step #13 - "compile-honggfuzz-address-x86_64": + make -j 32 Step #13 - "compile-honggfuzz-address-x86_64": [ 0%] Generating atomtyp.h Step #13 - "compile-honggfuzz-address-x86_64": [ 0%] Generating bondtyp.h Step #13 - "compile-honggfuzz-address-x86_64": [ 1%] Generating resdata.h Step #13 - "compile-honggfuzz-address-x86_64": [ 1%] Generating phmodeldata.h Step #13 - "compile-honggfuzz-address-x86_64": [ 1%] Generating torlib.h Step #13 - "compile-honggfuzz-address-x86_64": [ 1%] Generating types.h Step #13 - "compile-honggfuzz-address-x86_64": [ 1%] Generating atomizationenergies.h Step #13 - "compile-honggfuzz-address-x86_64": [ 2%] Generating spacegroups.h Step #13 - "compile-honggfuzz-address-x86_64": [ 2%] Generating ringtyp.h Step #13 - "compile-honggfuzz-address-x86_64": [ 2%] Built target data_headers Step #13 - "compile-honggfuzz-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 82 | _ival=nullptr; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #13 - "compile-honggfuzz-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 1523 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 1539 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 1572 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations][ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:310:34: /src/openbabel/src/forcefield.cpp:1372:32: warning: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().siz'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": e(); j++) { // For eac310h | rotor position Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5:  note:  'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetT orsionVa l uiefs (()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": bond2 == VZero || v1 == VZero) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 359 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::I/src/openbabel/src/forcefield.cpps:1622:8A: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1622 | p p r rl.SetFixAtoms(fixed); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.hox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": :633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: /src/openbabel/build/include/openbabel/babelconfig.h:38:38: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(mnote: sg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": 38 | #defi/src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1635 | combinationns *= rotor->eG eOBtResolution().size(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5:_D note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPREPRECECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.hA:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSTEG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": D_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1685 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPR/src/openbabel/src/builder.cpp:361:26: warning: E'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]CA Step #13 - "compile-honggfuzz-address-x86_64": T 361 | ED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECAT ED_MSG(msg )e [l[sdee pifre c(baotnedd2( m==s gV)Z]ero) Step #13 - "compile-honggfuzz-address-x86_64": ] | Step #13 - "compile-honggfuzz-address-x86_64":  ^ Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[depreca/src/openbabel/src/builder.cppted(ms:430:g)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 430 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^/src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38/src/openbabel/include/openbabel/math/vector3.h | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": :/src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("/src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: Unote: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": s e38 v | e c #define Otor3::B_DEIPsRAEpCpArToExD(_)MS Gin(smtsega)d .["[)de Step #13 - "compile-honggfuzz-address-x86_64": p r| ec ^a Step #13 - "compile-honggfuzz-address-x86_64": ted(/src/openbabel/build/include/openbabel/babelconfig.hm:s38g:)38]:]  Step #13 - "compile-honggfuzz-address-x86_64":  note: | expanded from macro 'OB_DEPRECATED_MSG' ^ Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64":  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 432 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 434 | else if (bond3 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 450 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 452 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 454 | else if (bond3 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 469 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 471 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 473 | else if (bond3 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 494 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 496 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 498 | else if (bond3 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 514 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 516 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 518 | else if (bond3 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2420 | if (IsNearZero(scale)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": | /src/openbabel/build/include/openbabel/babelconfig.h:37 ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": :38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 520 | else if (bond4 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 533 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 535 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]/src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 537 | Step #13 - "compile-honggfuzz-address-x86_64": else if (bond3 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": 2838|  ^ Step #13 - "compile-honggfuzz-address-x86_64": | /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_ DEPREC if (IsNear(ATED_MSG("Use vector3::IsApproxe_n2, _e_n1, _econv)() instea Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189d.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": :3: /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECAT #define OB_ED_MSG("Use DEPRECATED_MSIsApprox() G(msg) [instead"[depreca) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: ted(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": | note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": 539 | else if (bond4 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: /src/openbabel/src/builder.cpp:564:23: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] #/src/openbabel/src/mol.cppd:e2788f:29 Step #13 - "compile-honggfuzz-address-x86_64": :564 |   if (warning: bond1 =='operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] V Step #13 - "compile-honggfuzz-address-x86_64": Zero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":  2788/src/openbabel/include/openbabel/math/vector3.h | : 273 : 5 : note: 'operator==' has been explicitly marked deprecated here ine OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": 273 | i fOB_D (atom->GetVector() != VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | E P#RdEeCfAiTnEeD _OMBS_GD(E"PRECATED [[deUsep rveeccattore3d:]:]Is Step #13 - "compile-honggfuzz-address-x86_64": A p| pr ^o Step #13 - "compile-honggfuzz-address-x86_64": x() instead.") Step #13 - "compile-honggfuzz-address-x86_64":  |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #/src/openbabel/src/mol.cppd:e2805f:i23n:e OB_D EPRwarning: ECA'IsNearZero' is deprecated [-Wdeprecated-declarations]TE Step #13 - "compile-honggfuzz-address-x86_64": D_ M2805S | G ( m s g ) [ [idfe p(r!ehcaastYe d&(&m s!gI)s]N]ea Step #13 - "compile-honggfuzz-address-x86_64": r Z| er ^o Step #13 - "compile-honggfuzz-address-x86_64": (atom->y())) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprec/src/openbabel/src/builder.cpp:566:28: atwarning: ed]'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]] Step #13 - "compile-honggfuzz-address-x86_64": 566 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  Step #13 - "compile-honggfuzz-address-x86_64": | ^ ^ Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": | /src/openbabel/src/mol.cpp ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: :2826note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": : 38 | #de23f:i ne OB_DEPwarning: RECATED'IsNearZero' is deprecated [-Wdeprecated-declarations]_MSG(ms Step #13 - "compile-honggfuzz-address-x86_64": g) [[depreca t2826e | d(msg)]]  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":  if (!hasX && !IsNearZero(atom->x())) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here/src/openbabel/src/builder.cpp:568: Step #13 - "compile-honggfuzz-address-x86_64": 28: 197 | warning:  O'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]B_ Step #13 - "compile-honggfuzz-address-x86_64": DEPRE 568 | C AT E D  Step #13 - "compile-honggfuzz-address-x86_64": |  ^e Step #13 - "compile-honggfuzz-address-x86_64": lse if (bond3 == VZero/src/openbabel/build/include/openbabel/babelconfig.h): Step #13 - "compile-honggfuzz-address-x86_64": 37 :|  ^ Step #13 - "compile-honggfuzz-address-x86_64": 29:/src/openbabel/include/openbabel/math/vector3.h :273:5: note: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": expanded from macro 'OB_DEPRECATED' 273 | O Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": B_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 570 | else if (bond4 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 572 | else if (bond5 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 660 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:718:23/src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3735 | if (IsNearZero(length)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": : warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 718 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 720 | 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3789 | if (IsN earZero(l_ij) || IsNearZer o ( le_ljske) )i f{ ( Step #13 - "compile-honggfuzz-address-x86_64": b o| nd ^2 Step #13 - "compile-honggfuzz-address-x86_64": == VZe/src/openbabel/include/openbabel/obutil.hr:o197):3 Step #13 - "compile-honggfuzz-address-x86_64": : | note: ^ Step #13 - "compile-honggfuzz-address-x86_64": 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h: 273197: | 5 : OB_note: DE'operator==' has been explicitly marked deprecated herePR Step #13 - "compile-honggfuzz-address-x86_64": EC A273T | E D  Step #13 - "compile-honggfuzz-address-x86_64": O| B_ ^D Step #13 - "compile-honggfuzz-address-x86_64": EPRE/src/openbabel/build/include/openbabel/babelconfig.hC:A37T:E29D:_ MSGnote: ("expanded from macro 'OB_DEPRECATED'Us Step #13 - "compile-honggfuzz-address-x86_64": e v37e | c t o r 3#:d:eIfsiAnpep rOoBx_(D)E PiRnEsCtAeTaEdD. "[)[d Step #13 - "compile-honggfuzz-address-x86_64": e p| re ^c Step #13 - "compile-honggfuzz-address-x86_64": ated/src/openbabel/build/include/openbabel/babelconfig.h]:]38: Step #13 - "compile-honggfuzz-address-x86_64": 38 :|  ^ Step #13 - "compile-honggfuzz-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3802 | if (IsNearZero(length)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3252 | if ((*ringit)->PathSize() == 5) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:3274:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3274 | else if ((*ringit)->PathSize() == 6) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DE/src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3343 | PRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":   /src/openbabel/build/include/openbabel/babelconfig.h : 37 :l29o:o pnote: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": Si 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3973 | if (IsNearZero(leze = (*ringit)->PathSize(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": ngth_jl)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4195 |  if/src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] (Is Step #13 - "compile-honggfuzz-address-x86_64": NearZero 1427 | (l_ij) || I if sNearZero((bond1 l_jk) || I== VZesNearZero(ro) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": l/src/openbabel/include/openbabel/math/vector3.h:273:5:_kl) ) { Step #13 - "compile-honggfuzz-address-x86_64": note: 'operator==' has been explicitly marked deprecated here |  ^ Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Us/src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197e vector3 | OB_D::IsApprEPRECATEDox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[d[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": eprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 452 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 443 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 355 | rotor->SetDelta(delta); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 34 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 5 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 589 | gd->GetOriginVector(origin); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #13 - "compile-honggfuzz-address-x86_64": 310 | else if (vs[0][0] == '2') Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 51 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 9 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #13 - "compile-honggfuzz-address-x86_64": 911 | switch(pRD->ReactionType) Step #13 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #13 - "compile-honggfuzz-address-x86_64": 990 | switch(pRD->ReactionType) Step #13 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #13 - "compile-honggfuzz-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~ ^~~~ Step #13 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 275 | gd->GetOriginVector(origin); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #13 - "compile-honggfuzz-address-x86_64": 158 | switch (chirality) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #13 - "compile-honggfuzz-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #13 - "compile-honggfuzz-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #13 - "compile-honggfuzz-address-x86_64": | [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": ~ ^~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #13 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #13 - "compile-honggfuzz-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #13 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #13 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #13 - "compile-honggfuzz-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #13 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #13 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #13 - "compile-honggfuzz-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #13 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #13 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #13 - "compile-honggfuzz-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #13 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #13 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #13 - "compile-honggfuzz-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #13 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #13 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #13 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #13 - "compile-honggfuzz-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #13 - "compile-honggfuzz-address-x86_64": 153 | while(p2!=s2.[ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": end() && isdigit(*p2++)); --p2; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #13 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 1523 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #13 - "compile-honggfuzz-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~~~~~ ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #13 - "compile-honggfuzz-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #13 - "compile-honggfuzz-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 9 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": 4 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #13 - "compile-honggfuzz-address-x86_64": [ 75%] Built target openbabel Step #13 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #13 - "compile-honggfuzz-address-x86_64": 255 | // / \  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #13 - "compile-honggfuzz-address-x86_64": 270 | // / \  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #13 - "compile-honggfuzz-address-x86_64": 285 | // \  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #13 - "compile-honggfuzz-address-x86_64": 287 | // \  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #13 - "compile-honggfuzz-address-x86_64": 310 | // \  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #13 - "compile-honggfuzz-address-x86_64": 432 | // \  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #13 - "compile-honggfuzz-address-x86_64": 102 | switch (units.at(i).type) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #13 - "compile-honggfuzz-address-x86_64": 132 | switch (units.at(i).type) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #13 - "compile-honggfuzz-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #13 - "compile-honggfuzz-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #13 - "compile-honggfuzz-address-x86_64": [ 89%] Linking CXX executable ../bin/obabel Step #13 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #13 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 94%] Built target fuzz_obconversion_smiles Step #13 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 95%] Built target fuzz_obconversion_sdf Step #13 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 96%] Built target roundtrip Step #13 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 97%] Built target obabel Step #13 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 98%] Built target fuzz_convert Step #13 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 190 | x = m2.Get( i, j ); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) )17 warning Step #13 - "compile-honggfuzz-address-x86_64": s generated| . Step #13 - "compile-honggfuzz-address-x86_64":  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 24 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #13 - "compile-honggfuzz-address-x86_64": [100%] Built target test_runner Step #13 - "compile-honggfuzz-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/honggfuzz-address-x86_64/ Finished Step #13 - "compile-honggfuzz-address-x86_64" Starting Step #14 - "build-check-honggfuzz-address-x86_64" Step #14 - "build-check-honggfuzz-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #14 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpxx28fp2n/fuzz_obconversion_sdf Step #14 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpxx28fp2n/fuzz_obconversion_smiles Step #14 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpxx28fp2n/fuzz_convert Finished Step #14 - "build-check-honggfuzz-address-x86_64" Starting Step #15 Step #15: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #15 Starting Step #16 Step #16: Already have image: gcr.io/oss-fuzz/openbabel Step #16: adding: fuzz_convert (deflated 66%) Step #16: adding: fuzz_obconversion_sdf (deflated 66%) Step #16: adding: fuzz_obconversion_smiles (deflated 66%) Step #16: adding: honggfuzz (deflated 66%) Step #16: adding: llvm-symbolizer (deflated 66%) Finished Step #16 Starting Step #17 Step #17: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #17: % Total % Received % Xferd Average Speed Time Time Time Current Step #17: Dload Upload Total Spent Left Speed Step #17: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 724 --:--:-- --:--:-- --:--:-- 727 Finished Step #17 Starting Step #18 Step #18: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #18: % Total % Received % Xferd Average Speed Time Time Time Current Step #18: Dload Upload Total Spent Left Speed Step #18: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 40.3M 0 0 100 40.3M 0 90.8M --:--:-- --:--:-- --:--:-- 90.9M Finished Step #18 Starting Step #19 Step #19: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #19: % Total % Received % Xferd Average Speed Time Time Time Current Step #19: Dload Upload Total Spent Left Speed Step #19: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 187 --:--:-- --:--:-- --:--:-- 187 Finished Step #19 Starting Step #20 Step #20: Already have image (with digest): gcr.io/cloud-builders/curl Step #20: % Total % Received % Xferd Average Speed Time Time Time Current Step #20: Dload Upload Total Spent Left Speed Step #20: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 167 --:--:-- --:--:-- --:--:-- 167 Finished Step #20 Starting Step #21 Step #21: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #21 Starting Step #22 - "compile-libfuzzer-address-x86_64" Step #22 - "compile-libfuzzer-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #22 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #22 - "compile-libfuzzer-address-x86_64": vm.mmap_rnd_bits = 28 Step #22 - "compile-libfuzzer-address-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #22 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #22 - "compile-libfuzzer-address-x86_64": CC=clang Step #22 - "compile-libfuzzer-address-x86_64": CXX=clang++ Step #22 - "compile-libfuzzer-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link Step #22 - "compile-libfuzzer-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link -stdlib=libc++ Step #22 - "compile-libfuzzer-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #22 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #22 - "compile-libfuzzer-address-x86_64": + mkdir build Step #22 - "compile-libfuzzer-address-x86_64": + cd build Step #22 - "compile-libfuzzer-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #22 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #22 - "compile-libfuzzer-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #22 - "compile-libfuzzer-address-x86_64": CMake. Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #22 - "compile-libfuzzer-address-x86_64": CMake that the project does not need compatibility with older versions. Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64":  Step #22 - "compile-libfuzzer-address-x86_64": -- The C compiler identification is Clang 18.1.8 Step #22 - "compile-libfuzzer-address-x86_64": -- The CXX compiler identification is Clang 18.1.8 Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting C compiler ABI info Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting C compiler ABI info - done Step #22 - "compile-libfuzzer-address-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting C compile features Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting C compile features - done Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compiler ABI info Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compiler ABI info - done Step #22 - "compile-libfuzzer-address-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compile features Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compile features - done Step #22 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #22 - "compile-libfuzzer-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #22 - "compile-libfuzzer-address-x86_64": of CMake. Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #22 - "compile-libfuzzer-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #22 - "compile-libfuzzer-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #22 - "compile-libfuzzer-address-x86_64": behavior and not rely on setting a policy to OLD. Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64":  Step #22 - "compile-libfuzzer-address-x86_64": -- Using included inchi library. Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #22 - "compile-libfuzzer-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #22 - "compile-libfuzzer-address-x86_64": libxml2 not found - disabling CML support! Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64":  Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for conio.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for conio.h - not found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for sys/time.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for sys/time.h - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for time.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for time.h - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for strings.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for strings.h - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for regex.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for regex.h - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for C++ include sstream Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for C++ include sstream - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for rint Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for rint - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for snprintf Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for snprintf - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for sranddev Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for sranddev - not found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for strcasecmp Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for strcasecmp - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for strncasecmp Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for strncasecmp - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for xdrstdio_create Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for xdrstdio_create - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for dlopen in dl Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for dlopen in dl - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for sys/types.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for sys/types.h - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for stdint.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for stdint.h - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for stddef.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for stddef.h - found Step #22 - "compile-libfuzzer-address-x86_64": -- Check size of clock_t Step #22 - "compile-libfuzzer-address-x86_64": -- Check size of clock_t - done Step #22 - "compile-libfuzzer-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #22 - "compile-libfuzzer-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #22 - "compile-libfuzzer-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #22 - "compile-libfuzzer-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #22 - "compile-libfuzzer-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #22 - "compile-libfuzzer-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #22 - "compile-libfuzzer-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #22 - "compile-libfuzzer-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #22 - "compile-libfuzzer-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #22 - "compile-libfuzzer-address-x86_64": -- Found Threads: TRUE Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for getopt Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for getopt - found Step #22 - "compile-libfuzzer-address-x86_64": -- GUI will not be built Step #22 - "compile-libfuzzer-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #22 - "compile-libfuzzer-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #22 - "compile-libfuzzer-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #22 - "compile-libfuzzer-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64": Call Stack (most recent call first): Step #22 - "compile-libfuzzer-address-x86_64": test/CMakeLists.txt:233 (include) Step #22 - "compile-libfuzzer-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #22 - "compile-libfuzzer-address-x86_64":  Step #22 - "compile-libfuzzer-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.10.14") Step #22 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #22 - "compile-libfuzzer-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #22 - "compile-libfuzzer-address-x86_64": CMake. Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #22 - "compile-libfuzzer-address-x86_64": CMake that the project does not need compatibility with older versions. Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64":  Step #22 - "compile-libfuzzer-address-x86_64": -- Configuring done (6.2s) Step #22 - "compile-libfuzzer-address-x86_64": -- Generating done (0.1s) Step #22 - "compile-libfuzzer-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #22 - "compile-libfuzzer-address-x86_64": ++ nproc Step #22 - "compile-libfuzzer-address-x86_64": + make -j 32 Step #22 - "compile-libfuzzer-address-x86_64": [ 0%] Generating atomtyp.h Step #22 - "compile-libfuzzer-address-x86_64": [ 0%] Generating bondtyp.h Step #22 - "compile-libfuzzer-address-x86_64": [ 1%] Generating phmodeldata.h Step #22 - "compile-libfuzzer-address-x86_64": [ 1%] Generating resdata.h Step #22 - "compile-libfuzzer-address-x86_64": [ 1%] Generating torlib.h Step #22 - "compile-libfuzzer-address-x86_64": [ 1%] Generating types.h Step #22 - "compile-libfuzzer-address-x86_64": [ 1%] Generating atomizationenergies.h Step #22 - "compile-libfuzzer-address-x86_64": [ 2%] Generating spacegroups.h Step #22 - "compile-libfuzzer-address-x86_64": [ 2%] Generating ringtyp.h Step #22 - "compile-libfuzzer-address-x86_64": [ 2%] Built target data_headers Step #22 - "compile-libfuzzer-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 82 | _ival=nullptr; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #22 - "compile-libfuzzer-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 1523 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: /src/openbabel/src/builder.cpp:warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 499 | 359 theta = OBForceFi:21:e ld::VectorAwarning: ngleDer'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]ivati Step #22 - "compile-libfuzzer-address-x86_64": 359ve(da, db, dc); | Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": if (b/src/openbabel/include/openbabel/forcefield.ho:n1539d:15 := = Vnote: Ze'VectorAngleDerivative' has been explicitly marked deprecated herero Step #22 - "compile-libfuzzer-address-x86_64": ) 1539 Step #22 - "compile-libfuzzer-address-x86_64": | |  OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": | ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG(" ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37U | s e #define OB_DEPRECATED vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:/src/openbabel/src/forcefield.cpp361::26518:: 33: warning: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 361 | 518 | e l tshee tiaf =(b oOnBdF2o r=c=e FViZeero) Step #22 - "compile-libfuzzer-address-x86_64": | ld:: ^V Step #22 - "compile-libfuzzer-address-x86_64": ector/src/openbabel/include/openbabel/math/vector3.hT:or273s:i5:o nDernote: iv'operator==' has been explicitly marked deprecated hereat Step #22 - "compile-libfuzzer-address-x86_64": i ve273(d | a , d bO,B _dDcE,P RdEdC)A;TE Step #22 - "compile-libfuzzer-address-x86_64": D _| MS ^G Step #22 - "compile-libfuzzer-address-x86_64": ("Use /src/openbabel/include/openbabel/forcefield.hve:c1572t:o5r:3 ::Inote: sA'VectorTorsionDerivative' has been explicitly marked deprecated herepp Step #22 - "compile-libfuzzer-address-x86_64": r o1572x | ( ) OiBn_sDtEePaRdE.C"A)TED Step #22 - "compile-libfuzzer-address-x86_64":  Step #22 - "compile-libfuzzer-address-x86_64": | | ^ Step #22 - "compile-libfuzzer-address-x86_64": ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:/src/openbabel/build/include/openbabel/babelconfig.h38::3738::29 : note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": note: expanded from macro 'OB_DEPRECATED'38 | Step #22 - "compile-libfuzzer-address-x86_64": 37 | # d e f#idneef iOnBe _ODBEP_RDEEPCRAETCEADTE_DM S[G[(dmespgr)e c[a[tdeedp]r]ec Step #22 - "compile-libfuzzer-address-x86_64": a t| ed ^ Step #22 - "compile-libfuzzer-address-x86_64": (m[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": sg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 430 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 432 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 434 | else if (bond3 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 450 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 452 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 454 | else if (bond3 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 469 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 471 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 473 | else if (bond3 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 494 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [/src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 496 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instea/src/openbabel/src/mol.cppd:.2788":)29: Step #22 - "compile-libfuzzer-address-x86_64": | warning: ^ Step #22 - "compile-libfuzzer-address-x86_64": 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: 2788 | note:  expanded from macro 'OB_DEPRECATED_MSG'  Step #22 - "compile-libfuzzer-address-x86_64": if 38( | a t o m -#>define OB_DEPRECAGTeEtDV_MSG(msg) [[deecptroerc(ated(msg)])/src/openbabel/src/forcefield.cpp !:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": = 1193V | Z e r o )  Step #22 - "compile-libfuzzer-address-x86_64": combinations *= rotor->GetResolution().size(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": ] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64":  |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPREC/src/openbabel/src/builder.cppA:T498E:D28_:M SG(warning: msg'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]) Step #22 - "compile-libfuzzer-address-x86_64": [498[ | d else if (bond3 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OeBp_rDeEcPaRtEeCdA(TmEsDg_)M]S]G("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG( Step #22 - "compile-libfuzzer-address-x86_64": msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64":  |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37/src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 514 | | if (bond1 = = VZero) Step #22 - "compile-libfuzzer-address-x86_64": # d|  ^ Step #22 - "compile-libfuzzer-address-x86_64": e/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | fi OB_DEPRECATED_MSG("Use vneector3::IsApprox( OB) instead.") Step #22 - "compile-libfuzzer-address-x86_64": | _ ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: DEnote: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": P R38E | CATED #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 516 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 518 | else if (bond3 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 520 | else if (bond4 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 533 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 535 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 537 | else if (bond3 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 539 | else if (bond4 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 564 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: /src/openbabel/src/forcefield.cpp:'operator==' has been explicitly marked deprecated here1372: Step #22 - "compile-libfuzzer-address-x86_64": 32 :273 |   warning:  O'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]B_ Step #22 - "compile-libfuzzer-address-x86_64": DE P1372R | E C A T E D _ M SfGo(r" U(sje =v e0c;t ojr 3<: :rIostAoprp-r>oGxe(t)R eisnosltuetaido.n"()). Step #22 - "compile-libfuzzer-address-x86_64": s i| ze ^( Step #22 - "compile-libfuzzer-address-x86_64": ); j+/src/openbabel/build/include/openbabel/babelconfig.h+:)38 :{38 :/ / Fnote: or expanded from macro 'OB_DEPRECATED_MSG'ea Step #22 - "compile-libfuzzer-address-x86_64": c h38 | r o t o r# dpeofsiintei oOnB_ Step #22 - "compile-libfuzzer-address-x86_64": D E| PR ^E Step #22 - "compile-libfuzzer-address-x86_64": CATE/src/openbabel/include/openbabel/rotor.hD:_449M:S5G:( msgnote: ) 'GetResolution' has been explicitly marked deprecated here[[ Step #22 - "compile-libfuzzer-address-x86_64": de p449r | e c a t eOdB(_mDsEgP)R]E]CA Step #22 - "compile-libfuzzer-address-x86_64": T E| D_ ^M Step #22 - "compile-libfuzzer-address-x86_64": SG("S[ee Ge[tdTeoprrseicoantVeadl]u]es( Step #22 - "compile-libfuzzer-address-x86_64": ) "| ) ^ Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DE/src/openbabel/src/mol.cppP:R2805E:C23A:T ED_warning: MSG'IsNearZero' is deprecated [-Wdeprecated-declarations](m Step #22 - "compile-libfuzzer-address-x86_64": sg) [2805[ | d e pre c a t e d (imfs g()!]h]as Step #22 - "compile-libfuzzer-address-x86_64": Y | && ^ Step #22 - "compile-libfuzzer-address-x86_64": !IsNearZero(atom->y())) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2826 | if (!hasX && !IsNearZero(atom->x())) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2830 | if (!/src/openbabel/src/builder.cpph:a566s:Z28 :& & !warning: IsN'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]ea Step #22 - "compile-libfuzzer-address-x86_64": rZe r566o | ( a t o m - > z ( ) ) ) e Step #22 - "compile-libfuzzer-address-x86_64": l s| e ^i Step #22 - "compile-libfuzzer-address-x86_64": f (/src/openbabel/include/openbabel/obutil.hb:o197n:d32: == note: VZ'IsNearZero' has been explicitly marked deprecated hereer Step #22 - "compile-libfuzzer-address-x86_64": o) 197 Step #22 - "compile-libfuzzer-address-x86_64": | | O ^B Step #22 - "compile-libfuzzer-address-x86_64": _DEP/src/openbabel/include/openbabel/math/vector3.hR:E273C:A5T:E D Step #22 - "compile-libfuzzer-address-x86_64": note: | 'operator==' has been explicitly marked deprecated here ^ Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64":  273 |  /src/openbabel/build/include/openbabel/babelconfig.h : 37 :O29B:_ DEPnote: REexpanded from macro 'OB_DEPRECATED'CA Step #22 - "compile-libfuzzer-address-x86_64": TE D37_ | M S G ( "#Udsee fviencet oOrB_DEPR3E:CATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": :IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 568 | else if (bond3 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 570 | else if (bond4 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 572 | else if (bond5 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp/src/openbabel/src/builder.cpp::1444660::821:: warning: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations]'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64": 1444 | 660 | r l . S e t F i xiAft o(mbso(nfdi1x e=d=) ;VZ Step #22 - "compile-libfuzzer-address-x86_64": e r| o) ^ Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64":  |  ^/src/openbabel/include/openbabel/rotor.h Step #22 - "compile-libfuzzer-address-x86_64": :633:5/src/openbabel/include/openbabel/math/vector3.h:: 273:5note: : 'SetFixAtoms' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": note:  'operator==' has been explicitly marked deprecated here633 | Step #22 - "compile-libfuzzer-address-x86_64": 273 | O B _ DOEBP_RDEECPARTEECDA_TMESDG_(M"SSGe(e" SetUFsiex evdeBcotnodrs3(:):"I)sA Step #22 - "compile-libfuzzer-address-x86_64": p p| ro ^x Step #22 - "compile-libfuzzer-address-x86_64": () i/src/openbabel/build/include/openbabel/babelconfig.hn:s38t:e38a:d .")note:  Step #22 - "compile-libfuzzer-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' | Step #22 - "compile-libfuzzer-address-x86_64":  ^38 Step #22 - "compile-libfuzzer-address-x86_64": |   /src/openbabel/build/include/openbabel/babelconfig.h :#38d:e38f:i ne note: OBexpanded from macro 'OB_DEPRECATED_MSG'_D Step #22 - "compile-libfuzzer-address-x86_64": EPR E38C | A T E D _#MdSeGf(imnseg )O B[_[DdEePpRrEeCcAaTtEeDd_(MmSsGg()m]s] Step #22 - "compile-libfuzzer-address-x86_64": g )| [ ^[ Step #22 - "compile-libfuzzer-address-x86_64": deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #defi/src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 718 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 720 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3252 | if ((*ringit)->PathSize() == 5) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3274:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3274 | else if ((*ringit)->PathSize() == 6) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": ne OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1635 | combinations *= rotor->GetResolution().size(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1685 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1427 | if (bond1 == VZero) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2420 | if (IsNearZero(scale)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3735 | if (IsNearZero(length)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3802 | if (IsNearZero(length)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 452 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 443 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 355 | rotor->SetDelta(delta); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 34 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 5 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 589 | gd->GetOriginVector(origin); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #22 - "compile-libfuzzer-address-x86_64": 310 | else if (vs[0][0] == '2') Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 51 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 9 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #22 - "compile-libfuzzer-address-x86_64": 911 | switch(pRD->ReactionType) Step #22 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #22 - "compile-libfuzzer-address-x86_64": 990 | switch(pRD->ReactionType) Step #22 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #22 - "compile-libfuzzer-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~ ^~~~ Step #22 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 275 | gd->GetOriginVector(origin); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #22 - "compile-libfuzzer-address-x86_64": 158 | switch (chirality) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #22 - "compile-libfuzzer-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #22 - "compile-libfuzzer-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #22 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #22 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #22 - "compile-libfuzzer-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #22 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #22 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #22 - "compile-libfuzzer-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #22 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #22 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #22 - "compile-libfuzzer-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #22 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #22 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #22 - "compile-libfuzzer-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #22 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #22 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #22 - "compile-libfuzzer-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #22 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #22 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #22 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #22 - "compile-libfuzzer-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #22 - "compile-libfuzzer-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #22 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 515 | 6 warnings generated rab = OBF. Step #22 - "compile-libfuzzer-address-x86_64": orceField::VectorLengthDerivative(da, db); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 1523 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #22 - "compile-libfuzzer-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~~~~~ ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #22 - "compile-libfuzzer-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #22 - "compile-libfuzzer-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": 9 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": 4 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #22 - "compile-libfuzzer-address-x86_64": [ 75%] Built target openbabel Step #22 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #22 - "compile-libfuzzer-address-x86_64": 255 | //src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 96 | OB_ASSER/ / \  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": T(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #22 - "compile-libfuzzer-address-x86_64": 270 | // / \  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #22 - "compile-libfuzzer-address-x86_64": 285 | // \  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #22 - "compile-libfuzzer-address-x86_64": 287 | // \  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h 310 | : 38: // \  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": 38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #22 - "compile-libfuzzer-address-x86_64": 432 | // \  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #22 - "compile-libfuzzer-address-x86_64": 102 | switch (units.at(i).type) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #22 - "compile-libfuzzer-address-x86_64": 132 | switch (units.at(i).type) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #22 - "compile-libfuzzer-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #22 - "compile-libfuzzer-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #22 - "compile-libfuzzer-address-x86_64": [ 89%] Linking CXX executable ../bin/obabel Step #22 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #22 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 95%] Built target fuzz_obconversion_smiles Step #22 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 96%] Built target fuzz_obconversion_sdf Step #22 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 97%] Built target roundtrip Step #22 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 97%] Built target obabel Step #22 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 98%] Built target fuzz_convert Step #22 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 190 | x = m2.Get( i, j ); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": 17 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": 24 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #22 - "compile-libfuzzer-address-x86_64": [100%] Built target test_runner Step #22 - "compile-libfuzzer-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-address-x86_64/ Finished Step #22 - "compile-libfuzzer-address-x86_64" Starting Step #23 - "build-check-libfuzzer-address-x86_64" Step #23 - "build-check-libfuzzer-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #23 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp0zhhd2ge/fuzz_obconversion_sdf Step #23 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp0zhhd2ge/fuzz_obconversion_smiles Step #23 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp0zhhd2ge/fuzz_convert Finished Step #23 - "build-check-libfuzzer-address-x86_64" Starting Step #24 Step #24: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #24 Starting Step #25 Step #25: Already have image: gcr.io/oss-fuzz/openbabel Step #25: adding: fuzz_convert (deflated 68%) Step #25: adding: fuzz_obconversion_sdf (deflated 68%) Step #25: adding: fuzz_obconversion_smiles (deflated 68%) Step #25: adding: llvm-symbolizer (deflated 66%) Finished Step #25 Starting Step #26 Step #26: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #26: % Total % Received % Xferd Average Speed Time Time Time Current Step #26: Dload Upload Total Spent Left Speed Step #26: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 887 --:--:-- --:--:-- --:--:-- 888 Finished Step #26 Starting Step #27 Step #27: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #27: % Total % Received % Xferd Average Speed Time Time Time Current Step #27: Dload Upload Total Spent Left Speed Step #27: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 42.9M 0 0 100 42.9M 0 104M --:--:-- --:--:-- --:--:-- 104M Finished Step #27 Starting Step #28 Step #28: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #28: % Total % Received % Xferd Average Speed Time Time Time Current Step #28: Dload Upload Total Spent Left Speed Step #28: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 209 --:--:-- --:--:-- --:--:-- 210 Finished Step #28 Starting Step #29 Step #29: Already have image (with digest): gcr.io/cloud-builders/curl Step #29: % Total % Received % Xferd Average Speed Time Time Time Current Step #29: Dload Upload Total Spent Left Speed Step #29: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 118 --:--:-- --:--:-- --:--:-- 118 Finished Step #29 Starting Step #30 Step #30: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #30 Starting Step #31 - "compile-libfuzzer-undefined-x86_64" Step #31 - "compile-libfuzzer-undefined-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #31 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #31 - "compile-libfuzzer-undefined-x86_64": vm.mmap_rnd_bits = 28 Step #31 - "compile-libfuzzer-undefined-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #31 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #31 - "compile-libfuzzer-undefined-x86_64": CC=clang Step #31 - "compile-libfuzzer-undefined-x86_64": CXX=clang++ Step #31 - "compile-libfuzzer-undefined-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -fno-sanitize=function Step #31 - "compile-libfuzzer-undefined-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -stdlib=libc++ Step #31 - "compile-libfuzzer-undefined-x86_64": RUSTFLAGS=--cfg fuzzing -Cdebuginfo=1 -Cforce-frame-pointers Step #31 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #31 - "compile-libfuzzer-undefined-x86_64": + mkdir build Step #31 - "compile-libfuzzer-undefined-x86_64": + cd build Step #31 - "compile-libfuzzer-undefined-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #31 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #31 - "compile-libfuzzer-undefined-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #31 - "compile-libfuzzer-undefined-x86_64": CMake. Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #31 - "compile-libfuzzer-undefined-x86_64": CMake that the project does not need compatibility with older versions. Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": -- The C compiler identification is Clang 18.1.8 Step #31 - "compile-libfuzzer-undefined-x86_64": -- The CXX compiler identification is Clang 18.1.8 Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compiler ABI info Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compiler ABI info - done Step #31 - "compile-libfuzzer-undefined-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compile features Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compile features - done Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compiler ABI info Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compiler ABI info - done Step #31 - "compile-libfuzzer-undefined-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compile features Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compile features - done Step #31 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #31 - "compile-libfuzzer-undefined-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #31 - "compile-libfuzzer-undefined-x86_64": of CMake. Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #31 - "compile-libfuzzer-undefined-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #31 - "compile-libfuzzer-undefined-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #31 - "compile-libfuzzer-undefined-x86_64": behavior and not rely on setting a policy to OLD. Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": -- Using included inchi library. Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #31 - "compile-libfuzzer-undefined-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #31 - "compile-libfuzzer-undefined-x86_64": libxml2 not found - disabling CML support! Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for conio.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for conio.h - not found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/time.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/time.h - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for time.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for time.h - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for strings.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for strings.h - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for regex.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for regex.h - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for C++ include sstream Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for C++ include sstream - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for rint Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for rint - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for snprintf Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for snprintf - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for sranddev Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for sranddev - not found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for strcasecmp Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for strcasecmp - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for strncasecmp Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for strncasecmp - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for xdrstdio_create Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for xdrstdio_create - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for dlopen in dl Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for dlopen in dl - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/types.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/types.h - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for stdint.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for stdint.h - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for stddef.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for stddef.h - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Check size of clock_t Step #31 - "compile-libfuzzer-undefined-x86_64": -- Check size of clock_t - done Step #31 - "compile-libfuzzer-undefined-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #31 - "compile-libfuzzer-undefined-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #31 - "compile-libfuzzer-undefined-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #31 - "compile-libfuzzer-undefined-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #31 - "compile-libfuzzer-undefined-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #31 - "compile-libfuzzer-undefined-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #31 - "compile-libfuzzer-undefined-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #31 - "compile-libfuzzer-undefined-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #31 - "compile-libfuzzer-undefined-x86_64": -- Found Threads: TRUE Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for getopt Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for getopt - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- GUI will not be built Step #31 - "compile-libfuzzer-undefined-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #31 - "compile-libfuzzer-undefined-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #31 - "compile-libfuzzer-undefined-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #31 - "compile-libfuzzer-undefined-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64": Call Stack (most recent call first): Step #31 - "compile-libfuzzer-undefined-x86_64": test/CMakeLists.txt:233 (include) Step #31 - "compile-libfuzzer-undefined-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.10.14") Step #31 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #31 - "compile-libfuzzer-undefined-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #31 - "compile-libfuzzer-undefined-x86_64": CMake. Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #31 - "compile-libfuzzer-undefined-x86_64": CMake that the project does not need compatibility with older versions. Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": -- Configuring done (4.6s) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Generating done (0.1s) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Build files have been written to: /src/openbabel/build Step #31 - "compile-libfuzzer-undefined-x86_64": ++ nproc Step #31 - "compile-libfuzzer-undefined-x86_64": + make -j 32 Step #31 - "compile-libfuzzer-undefined-x86_64": [ 0%] Generating atomtyp.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 0%] Generating bondtyp.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating phmodeldata.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating resdata.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating torlib.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating types.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating atomizationenergies.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 2%] Generating spacegroups.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 2%] Generating ringtyp.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 2%] Built target data_headers Step #31 - "compile-libfuzzer-undefined-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 82 | _ival=nullptr; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 297 | if (!IsNearZero(val[2])) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 1523 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 1539 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 1572 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #31 - "compile-libfuzzer-undefined-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionV/src/openbabel/src/builder.cppalues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": :359:21:/src/openbabel/build/include/openbabel/babelconfig.h:38:38: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 359 | note: if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 361 | else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValue/src/openbabel/src/builder.cpp:s()") Step #31 - "compile-libfuzzer-undefined-x86_64": | 430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 430 | ^ Step #31 - "compile-libfuzzer-undefined-x86_64":  /src/openbabel/build/include/openbabel/babelconfig.h:38:38: if (bond1 == Vnote: expanded from macro 'OB_DEPRECATED_MSG'Zero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: Step #31 - "compile-libfuzzer-undefined-x86_64": note:  38 | #de'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": fin273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": e OB_DEPRECATED_MSG(msg/src/openbabel/src/builder.cpp) :432[[deprec:28a: tewarning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 432d | ( m s g ) else if ](b]ond2 Step #31 - "compile-libfuzzer-undefined-x86_64": = = | VZer ^o) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 434 | else if (bond3 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here/src/openbabel/src/forcefield.cpp:1482:52:  Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPwarning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": RECATED_MSG("Use vector3::IsApprox() inste1482 | road.") Step #31 - "compile-libfuzzer-undefined-x86_64": torKey[i |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": ]/src/openbabel/build/include/openbabel/babelconfig.h:38:38: = genernote: expanded from macro 'OB_DEPRECATED_MSG'ator.Nex Step #31 - "compile-libfuzzer-undefined-x86_64": t In38t( | ) % r#odteofri-n>eG eOtBR_eDsEoPlRuEtCiAoTnE(D)_.MsSiGz(em(s)g) [;[d Step #31 - "compile-libfuzzer-undefined-x86_64": e p| re ^c Step #31 - "compile-libfuzzer-undefined-x86_64": ated(/src/openbabel/include/openbabel/rotor.hm:sg449):]5]:  Step #31 - "compile-libfuzzer-undefined-x86_64":  note: | 'GetResolution' has been explicitly marked deprecated here ^ Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64":  449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 450 | if (bond1 == VZe38 | ro) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64":  /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | O B_ #define DEPRECATED_MSG("Use vector3::IsApprox() instead.O") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:B38:_D38: note: EPRECATED_MSG(msexpanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #dgefine OB_DEPR) [[deprecateECATED_MSG(msg) [[ded(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^preca Step #31 - "compile-libfuzzer-undefined-x86_64": ted(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 452 | else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 454 | else if (bond3 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() in/src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1622 | stead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64":  rl.SetFixAtoms(fixed); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp/src/openbabel/include/openbabel/rotor.h::633469:23: warning: :5'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]: Step #31 - "compile-libfuzzer-undefined-x86_64": note: 469 | if (bo'SetFixAtoms' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": nd1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG( "633U | s e v eOcBt_or3::IsApprox() instDEPRECATED_MSG("ead.") Step #31 - "compile-libfuzzer-undefined-x86_64": See SetFixedBon|  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": ds()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38/src/openbabel/build/include/openbabel/babelconfig.h:: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 3838:38 | #define : note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | OB_DEPRECATED_M#defiSG(msg) [[deprne OeBc_aDtEePRECATED_MSG(msg) [[ded(pmrecated(mssg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": g)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp/src/openbabel/src/builder.cpp::1635471:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1635:28: |  warning:   'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 471 | else if (b ond2 == cVZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": o/src/openbabel/include/openbabel/math/vector3.hmb:273:5: inations *= rotor->note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OGetResolution().sB_DEPRECATize(); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": ED_MSG("Use vector3::IsA/src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449pprox() i | n s t e aOd.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": B_DEPRECATED_MSG("See GetTors/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38ionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": | | #define OB_DE ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: PRECATnote: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": ED_MSG(msg) [[dep38 | #dreefine OB_DEPRECATcated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": | ED_MSG(msg ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 473 | ) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": else if (bond3 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[1685d | e p r e c a tfeodr( m(sugn)s]i]gn Step #31 - "compile-libfuzzer-undefined-x86_64": e d| i ^n Step #31 - "compile-libfuzzer-undefined-x86_64": t j = 0; j < rotor->GetResolution().size(); j++) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 494 | if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 496 | else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": ] 1712 | for (unsigned int ]j = 0; j < rotor->GetRe Step #31 - "compile-libfuzzer-undefined-x86_64": solution().size(); j++) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": | /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": ^ Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64":  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 498 | /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); e j++) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": l/src/openbabel/include/openbabel/rotor.hs:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | e OB_DEPRECATED_MSG("See GetT orsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:i38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": f38 | ( #define OB_DEPRECATED_MSG(msg) [[debprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": ond3 =/src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1720 | = V Z e r if (IsoNear(worstE, b)estE, 1.0e-3)) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsAppro Step #31 - "compile-libfuzzer-undefined-x86_64": x () instead")|  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 38 |  /src/openbabel/include/openbabel/math/vector3.h #define OB_DEPREC:A273TED_MSG(msg) [[deprecate:d(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": 5 |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": : /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1721note: |  weig'operator==' has been explicitly marked deprecated hereht = 1 / Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_ rotor->GDeEPtRERCeAsTolEDut_iMoSnG(()".Ussiez ev(e)c;to Step #31 - "compile-libfuzzer-undefined-x86_64": r3| :: ^I Step #31 - "compile-libfuzzer-undefined-x86_64": sAppr/src/openbabel/include/openbabel/rotor.ho:x(449): 5i:n stenote: ad'GetResolution' has been explicitly marked deprecated here." Step #31 - "compile-libfuzzer-undefined-x86_64": )  Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64":  OB/src/openbabel/build/include/openbabel/babelconfig.h_:D38E:P38R:E CATnote: ED_expanded from macro 'OB_DEPRECATED_MSG'M Step #31 - "compile-libfuzzer-undefined-x86_64": SG(38" | S e e G#edtTeofirnsei onOVBa_lDuEePsR(EC)A"T)ED Step #31 - "compile-libfuzzer-undefined-x86_64": _ M| SG ^(msg Step #31 - "compile-libfuzzer-undefined-x86_64": ) [[/src/openbabel/build/include/openbabel/babelconfig.hde:pr38e:c38a:t ed(note: msgexpanded from macro 'OB_DEPRECATED_MSG')] Step #31 - "compile-libfuzzer-undefined-x86_64": ]  Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution(/src/openbabel/src/builder.cpp).:s514i:z23e:( ); warning: j++'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]) Step #31 - "compile-libfuzzer-undefined-x86_64": {  Step #31 - "compile-libfuzzer-undefined-x86_64": 514 | |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h : 449i:f5 :( bonnote: d'GetResolution' has been explicitly marked deprecated here1 Step #31 - "compile-libfuzzer-undefined-x86_64": ==449 | V Z e r oO)B_ Step #31 - "compile-libfuzzer-undefined-x86_64": D E| PR ^E Step #31 - "compile-libfuzzer-undefined-x86_64": CATED/src/openbabel/include/openbabel/math/vector3.h_:M273S:G5(:" Seenote: G'operator==' has been explicitly marked deprecated hereet Step #31 - "compile-libfuzzer-undefined-x86_64": T or273s | i o n Va lOuBe_sD(E)P"R)EC Step #31 - "compile-libfuzzer-undefined-x86_64": A T| ED_ ^M Step #31 - "compile-libfuzzer-undefined-x86_64": SG("/src/openbabel/build/include/openbabel/babelconfig.hUs:e38 :v38e:c tornote: 3:expanded from macro 'OB_DEPRECATED_MSG':I Step #31 - "compile-libfuzzer-undefined-x86_64": s Ap38p | r o x ( )# dienfsitneea dO.B"_)DE Step #31 - "compile-libfuzzer-undefined-x86_64": P R| EC ^A Step #31 - "compile-libfuzzer-undefined-x86_64": TED_/src/openbabel/build/include/openbabel/babelconfig.hM:S38G:(38m:s g)note: [expanded from macro 'OB_DEPRECATED_MSG'[d Step #31 - "compile-libfuzzer-undefined-x86_64": e pr38e | c a t e d#(dmesg)]f]in Step #31 - "compile-libfuzzer-undefined-x86_64": e | OB ^_ Step #31 - "compile-libfuzzer-undefined-x86_64": DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 516 | else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 518 | else if (bond3 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 520 | else if (bond4 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 533 | if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 535 | else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 537 | else if (bond3 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 539 | else if (bond4 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 564 | if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 566 | else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 568 | else if (bond3 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 570 | else if (bond4 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2420 | if (IsNearZe/src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 572 | else if (bond5 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": ro(scale)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 660 | if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_D/src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2788 | if (atom->GetVector() != VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": | EPR ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": ECATED_MSG("Use IsApprox() in/src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197stead") Step #31 - "compile-libfuzzer-undefined-x86_64": | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64":  |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h/src/openbabel/src/mol.cpp::2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2805 | if (!hasY && !IsNearZero(atom->y())) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRE38CATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": :38: /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 718 | note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #defin/src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2826 | e if (!hasX && !IsNearZero(atom->x())) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_iDEf PRECATED [[deprec atOB_DEPRECATEeD_dM]S]G(msg( Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": bond/src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations]1 = Step #31 - "compile-libfuzzer-undefined-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h=:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ | OB_DEPRECAT Step #31 - "compile-libfuzzer-undefined-x86_64": ED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273/src/openbabel/src/mol.cpp::2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2830 | 5:  inote: f (!h'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273asZ && !IsNearZero(atom->z())) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | | OB_ OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #dDefine OB_DEPRECATED [[depErecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": | P ^ Step #31 - "compile-libfuzzer-undefined-x86_64": RECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) ) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 720 | /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64":  else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[de/src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2838 | if (IsNear(e_n2, _e_np1, _econv) Step #31 - "compile-libfuzzer-undefined-x86_64": r |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:e189c:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": a189t | e OB_DEPRECATED_MSG("Use IsApprox()d (imnstead") Step #31 - "compile-libfuzzer-undefined-x86_64": | s ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": g 38 | #defin)e OB_DEPRECATED_MSG(msg) [[de]]precated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3252 | if ((*ringit)->PathSize() == 5) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3274:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3274 | else if ((*ringit)->PathSize() == 6) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3735 | if (IsNearZero(length)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3802 | if (IsNearZero(length)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPR/src/openbabel/src/builder.cppE:C1427A:T17E:D  Step #31 - "compile-libfuzzer-undefined-x86_64":  warning: |  ^'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h :142737 | : 29 :   note: ifexpanded from macro 'OB_DEPRECATED' ( Step #31 - "compile-libfuzzer-undefined-x86_64": bo n37d | 1 = = #VdZeefrion)e {OB Step #31 - "compile-libfuzzer-undefined-x86_64": _ D| EP ^R Step #31 - "compile-libfuzzer-undefined-x86_64": ECATE/src/openbabel/include/openbabel/math/vector3.hD: 273[:[5d:e prenote: ca'operator==' has been explicitly marked deprecated herete Step #31 - "compile-libfuzzer-undefined-x86_64": d]] Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": 3 warnings[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 452 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 443 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 355 | rotor->SetDelta(delta); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 371 | if (!IsNearZero(pcharge)) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 5 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 589 | gd->GetOriginVector(origin); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 34 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #31 - "compile-libfuzzer-undefined-x86_64": 310 | else if (vs[0][0] == '2') Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 51 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #31 - "compile-libfuzzer-undefined-x86_64": 911 | switch(pRD->ReactionType) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #31 - "compile-libfuzzer-undefined-x86_64": 990 | switch(pRD->ReactionType) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #31 - "compile-libfuzzer-undefined-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~ ^~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 275 | gd->GetOriginVector(origin); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 9 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #31 - "compile-libfuzzer-undefined-x86_64": 158 | switch (chirality) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #31 - "compile-libfuzzer-undefined-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #31 - "compile-libfuzzer-undefined-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #31 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #31 - "compile-libfuzzer-undefined-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #31 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #31 - "compile-libfuzzer-undefined-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #31 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #31 - "compile-libfuzzer-undefined-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #31 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #31 - "compile-libfuzzer-undefined-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #31 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #31 - "compile-libfuzzer-undefined-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #31 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #31 - "compile-libfuzzer-undefined-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #31 - "compile-libfuzzer-undefined-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #31 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 1523 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[depr/src/openbabel/src/depict/depict.cppec:1237:99: warning: aexpression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #31 - "compile-libfuzzer-undefined-x86_64": 1237 | t statiecd (const vmsg)]ector pat = vector<] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~~~~~ ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #31 - "compile-libfuzzer-undefined-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #31 - "compile-libfuzzer-undefined-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 9 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": 4 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #31 - "compile-libfuzzer-undefined-x86_64": [ 75%] Built target openbabel Step #31 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #31 - "compile-libfuzzer-undefined-x86_64": 255 | // / \  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #31 - "compile-libfuzzer-undefined-x86_64": 270 | // / \  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #31 - "compile-libfuzzer-undefined-x86_64": 285 | // \  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #31 - "compile-libfuzzer-undefined-x86_64": 287 | // \  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #31 - "compile-libfuzzer-undefined-x86_64": 310 | // \  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #31 - "compile-libfuzzer-undefined-x86_64": 432 | // \  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #31 - "compile-libfuzzer-undefined-x86_64": 102 | switch (units.at(i).type) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #31 - "compile-libfuzzer-undefined-x86_64": 132 | switch (units.at(i).type) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #31 - "compile-libfuzzer-undefined-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #31 - "compile-libfuzzer-undefined-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 89%] Linking CXX executable ../bin/obabel Step #31 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 90%] Linking CXX executable ../bin/fuzz_convert Step #31 - "compile-libfuzzer-undefined-x86_64": [ 90%] Linking CXX executable ../bin/roundtrip Step #31 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 94%] Built target fuzz_obconversion_smiles Step #31 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 94%] Built target fuzz_obconversion_sdf Step #31 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 96%] Built target obabel Step #31 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 96%] Built target roundtrip Step #31 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 97%] Built target fuzz_convert Step #31 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 190 | x = m2.Get( i, j ); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 17 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 288 | if ( I6s warningNse generateda. Step #31 - "compile-libfuzzer-undefined-x86_64": r(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 24 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #31 - "compile-libfuzzer-undefined-x86_64": [100%] Built target test_runner Step #31 - "compile-libfuzzer-undefined-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-undefined-x86_64/ Finished Step #31 - "compile-libfuzzer-undefined-x86_64" Starting Step #32 - "build-check-libfuzzer-undefined-x86_64" Step #32 - "build-check-libfuzzer-undefined-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #32 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpcbc9v9t1/fuzz_obconversion_sdf Step #32 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpcbc9v9t1/fuzz_obconversion_smiles Step #32 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpcbc9v9t1/fuzz_convert Finished Step #32 - "build-check-libfuzzer-undefined-x86_64" Starting Step #33 Step #33: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #33 Starting Step #34 Step #34: Already have image: gcr.io/oss-fuzz/openbabel Step #34: adding: fuzz_convert (deflated 72%) Step #34: adding: fuzz_obconversion_sdf (deflated 72%) Step #34: adding: fuzz_obconversion_smiles (deflated 72%) Step #34: adding: llvm-symbolizer (deflated 66%) Finished Step #34 Starting Step #35 Step #35: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #35: % Total % Received % Xferd Average Speed Time Time Time Current Step #35: Dload Upload Total Spent Left Speed Step #35: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 851 --:--:-- --:--:-- --:--:-- 851 100 160 0 0 100 160 0 851 --:--:-- --:--:-- --:--:-- 851 Finished Step #35 Starting Step #36 Step #36: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #36: % Total % Received % Xferd Average Speed Time Time Time Current Step #36: Dload Upload Total Spent Left Speed Step #36: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 39.9M 0 0 100 39.9M 0 74.6M --:--:-- --:--:-- --:--:-- 74.6M 100 39.9M 0 0 100 39.9M 0 74.6M --:--:-- --:--:-- --:--:-- 74.6M Finished Step #36 Starting Step #37 Step #37: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #37: % Total % Received % Xferd Average Speed Time Time Time Current Step #37: Dload Upload Total Spent Left Speed Step #37: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 231 --:--:-- --:--:-- --:--:-- 230 100 60 0 0 100 60 0 231 --:--:-- --:--:-- --:--:-- 230 Finished Step #37 Starting Step #38 Step #38: Already have image (with digest): gcr.io/cloud-builders/curl Step #38: % Total % Received % Xferd Average Speed Time Time Time Current Step #38: Dload Upload Total Spent Left Speed Step #38: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 36 0 0 100 36 0 190 --:--:-- --:--:-- --:--:-- 190 Finished Step #38 Starting Step #39 Step #39: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #39 PUSH DONE