starting build "870fc9ff-998f-40ea-ab4e-227100928ef3" FETCHSOURCE BUILD Starting Step #0 Step #0: Already have image (with digest): gcr.io/cloud-builders/git Step #0: Cloning into 'oss-fuzz'... Finished Step #0 Starting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1" Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Already have image (with digest): gcr.io/cloud-builders/docker Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Sending build context to Docker daemon 7.168kB Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Step 1/5 : FROM gcr.io/oss-fuzz-base/base-builder Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": latest: Pulling from oss-fuzz-base/base-builder Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b549f31133a9: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": f2a0a2122cac: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": f1f49e88d4a6: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 17d09567dfe3: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 0f004aebf452: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 81b1fa092e37: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 094e4def4526: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 4ef7d71d3817: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 4d673f9814a2: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1fdb387d4652: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": bc3c0b4d9b06: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b9e112c3ee27: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": de3f39d1683e: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": eaee4dbf6fb6: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1db49769b75e: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 32c617d4b9da: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 160bfab4072d: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 9c2c5bb10f30: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b40969a9c0de: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 31f14e4b2fec: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1a033f98c348: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": fd114ddf6ba3: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 86e657ced17e: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 69b68153a45f: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 8095000851d5: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 23223128b05e: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": df11e8de3d8a: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 8d0541a29768: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": fd994df9c7b7: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b23cc085e692: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 96d2e6872be3: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 196a6d800c34: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 139e6491fe45: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 3a58e2989131: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 9c2c5bb10f30: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b40969a9c0de: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 4ebb27817e6e: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1137632ee490: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 31f14e4b2fec: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": de3f39d1683e: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": eebc460e731a: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1a033f98c348: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 3162ce6f1070: Pulling fs layer Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": fd114ddf6ba3: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": fd994df9c7b7: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": eaee4dbf6fb6: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 86e657ced17e: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1db49769b75e: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b23cc085e692: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 69b68153a45f: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 96d2e6872be3: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 8095000851d5: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 32c617d4b9da: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 160bfab4072d: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1137632ee490: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 23223128b05e: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": eebc460e731a: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": df11e8de3d8a: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 196a6d800c34: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 8d0541a29768: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 3162ce6f1070: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 139e6491fe45: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 4ebb27817e6e: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 094e4def4526: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 4d673f9814a2: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 3a58e2989131: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 4ef7d71d3817: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": bc3c0b4d9b06: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b9e112c3ee27: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1fdb387d4652: Waiting Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": f1f49e88d4a6: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 0f004aebf452: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 0f004aebf452: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 094e4def4526: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b549f31133a9: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b549f31133a9: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 4ef7d71d3817: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 17d09567dfe3: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 17d09567dfe3: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": bc3c0b4d9b06: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": bc3c0b4d9b06: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b9e112c3ee27: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b9e112c3ee27: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": eaee4dbf6fb6: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": de3f39d1683e: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": de3f39d1683e: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": f2a0a2122cac: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": f2a0a2122cac: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1db49769b75e: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1db49769b75e: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 32c617d4b9da: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 9c2c5bb10f30: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 9c2c5bb10f30: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1fdb387d4652: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1fdb387d4652: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b40969a9c0de: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b40969a9c0de: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 160bfab4072d: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 160bfab4072d: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": fd114ddf6ba3: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": fd114ddf6ba3: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 31f14e4b2fec: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 31f14e4b2fec: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1a033f98c348: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1a033f98c348: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 86e657ced17e: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 86e657ced17e: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 69b68153a45f: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 69b68153a45f: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 8095000851d5: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": df11e8de3d8a: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b549f31133a9: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 23223128b05e: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 8d0541a29768: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 8d0541a29768: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": fd994df9c7b7: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": fd994df9c7b7: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 96d2e6872be3: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 96d2e6872be3: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b23cc085e692: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b23cc085e692: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 196a6d800c34: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 196a6d800c34: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 139e6491fe45: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 139e6491fe45: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 3a58e2989131: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 3a58e2989131: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1137632ee490: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1137632ee490: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 4d673f9814a2: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 4d673f9814a2: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 4ebb27817e6e: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": eebc460e731a: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": eebc460e731a: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 3162ce6f1070: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 3162ce6f1070: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 81b1fa092e37: Verifying Checksum Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 81b1fa092e37: Download complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": f2a0a2122cac: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": f1f49e88d4a6: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 17d09567dfe3: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 0f004aebf452: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 81b1fa092e37: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 094e4def4526: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 4ef7d71d3817: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 4d673f9814a2: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1fdb387d4652: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": bc3c0b4d9b06: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b9e112c3ee27: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": de3f39d1683e: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": eaee4dbf6fb6: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1db49769b75e: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 32c617d4b9da: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 160bfab4072d: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 9c2c5bb10f30: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b40969a9c0de: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 31f14e4b2fec: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1a033f98c348: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": fd114ddf6ba3: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 86e657ced17e: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 69b68153a45f: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 8095000851d5: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 23223128b05e: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": df11e8de3d8a: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 8d0541a29768: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": fd994df9c7b7: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": b23cc085e692: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 96d2e6872be3: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 196a6d800c34: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 139e6491fe45: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 3a58e2989131: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 4ebb27817e6e: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 1137632ee490: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": eebc460e731a: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 3162ce6f1070: Pull complete Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Digest: sha256:95ab1c04100f9e57dd0510e965e073e6b241b5f6f93fd845983a8f731e90a9d3 Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-builder:latest Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": ---> 55424fa70670 Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Step 2/5 : RUN apt-get update && apt install -y cmake Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": ---> Running in 7ee11fc1165a Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Hit:1 http://archive.ubuntu.com/ubuntu focal InRelease Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Hit:2 http://archive.ubuntu.com/ubuntu focal-updates InRelease Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Hit:3 http://archive.ubuntu.com/ubuntu focal-backports InRelease Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Hit:4 http://security.ubuntu.com/ubuntu focal-security InRelease Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Reading package lists... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1":  Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Reading package lists... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Building dependency tree... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Reading state information... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": The following packages were automatically installed and are no longer required: Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": autotools-dev libsigsegv2 m4 Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Use 'apt autoremove' to remove them. Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": The following additional packages will be installed: Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Suggested packages: Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": cmake-doc ninja-build lrzip Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": The following NEW packages will be installed: Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": cmake cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Need to get 15.0 MB of archives. Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": After this operation, 65.0 MB of additional disk space will be used. Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libicu66 amd64 66.1-2ubuntu2.1 [8515 kB] Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2 amd64 2.9.10+dfsg-5ubuntu0.20.04.10 [640 kB] Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1 amd64 1.34.2-1ubuntu1.5 [80.9 kB] Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake-data all 3.16.3-1ubuntu1.20.04.1 [1613 kB] Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libarchive13 amd64 3.4.0-2ubuntu1.5 [327 kB] Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake amd64 3.16.3-1ubuntu1.20.04.1 [3668 kB] Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": debconf: delaying package configuration, since apt-utils is not installed Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Fetched 15.0 MB in 1s (24.5 MB/s) Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Selecting previously unselected package libicu66:amd64. Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17483 files and directories currently installed.) Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Preparing to unpack .../0-libicu66_66.1-2ubuntu2.1_amd64.deb ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Unpacking libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Selecting previously unselected package libxml2:amd64. Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Preparing to unpack .../1-libxml2_2.9.10+dfsg-5ubuntu0.20.04.10_amd64.deb ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Unpacking libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.10) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Selecting previously unselected package libuv1:amd64. Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Preparing to unpack .../2-libuv1_1.34.2-1ubuntu1.5_amd64.deb ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Unpacking libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Selecting previously unselected package cmake-data. Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Preparing to unpack .../3-cmake-data_3.16.3-1ubuntu1.20.04.1_all.deb ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Unpacking cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Selecting previously unselected package libarchive13:amd64. Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Preparing to unpack .../4-libarchive13_3.4.0-2ubuntu1.5_amd64.deb ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Unpacking libarchive13:amd64 (3.4.0-2ubuntu1.5) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Selecting previously unselected package libjsoncpp1:amd64. Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Preparing to unpack .../5-libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Selecting previously unselected package librhash0:amd64. Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Preparing to unpack .../6-librhash0_1.3.9-1_amd64.deb ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Unpacking librhash0:amd64 (1.3.9-1) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Selecting previously unselected package cmake. Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Preparing to unpack .../7-cmake_3.16.3-1ubuntu1.20.04.1_amd64.deb ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Unpacking cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Setting up libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Setting up libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Setting up librhash0:amd64 (1.3.9-1) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Setting up cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Setting up libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.10) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Setting up libarchive13:amd64 (3.4.0-2ubuntu1.5) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Setting up cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Processing triggers for libc-bin (2.31-0ubuntu9.18) ... Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Removing intermediate container 7ee11fc1165a Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": ---> 12dbb581c5a0 Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Step 3/5 : RUN git clone --depth 1 https://github.com/openbabel/openbabel.git Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": ---> Running in f12b00094de0 Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Cloning into 'openbabel'... 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Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Removing intermediate container f12b00094de0 Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": ---> bed848daf28f Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Step 4/5 : COPY *.sh $SRC/ Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": ---> bc01654fa25f Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Step 5/5 : WORKDIR $SRC/openbabel Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": ---> Running in da7c87ad72a6 Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Removing intermediate container da7c87ad72a6 Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": ---> 5392d6c3ad2e Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Successfully built 5392d6c3ad2e Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Successfully tagged gcr.io/oss-fuzz/openbabel:latest Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1": Successfully tagged us-central1-docker.pkg.dev/oss-fuzz/unsafe/openbabel:latest Finished Step #1 - "build-2e78c507-9c6f-4feb-b696-9cd58f8122d1" Starting Step #2 - "srcmap" Step #2 - "srcmap": Already have image: gcr.io/oss-fuzz/openbabel Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + SRCMAP=/tmp/fileJ8XGlQ Step #2 - "srcmap": + echo '{}' Step #2 - "srcmap": + PATHS_TO_SCAN=/src Step #2 - "srcmap": + [[ c++ == \g\o ]] Step #2 - "srcmap": ++ find /src -name .git -type d Step #2 - "srcmap": + for DOT_GIT_DIR in $(find $PATHS_TO_SCAN -name ".git" -type d) Step #2 - "srcmap": ++ dirname /src/openbabel/.git Step #2 - "srcmap": + GIT_DIR=/src/openbabel Step #2 - "srcmap": + cd /src/openbabel Step #2 - "srcmap": ++ git config --get remote.origin.url Step #2 - "srcmap": + GIT_URL=https://github.com/openbabel/openbabel.git Step #2 - "srcmap": ++ git rev-parse HEAD Step #2 - "srcmap": + GIT_REV=889c350feb179b43aa43985799910149d4eaa2bc Step #2 - "srcmap": + jq_inplace /tmp/fileJ8XGlQ '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "889c350feb179b43aa43985799910149d4eaa2bc" }' Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + F=/tmp/filetx06t9 Step #2 - "srcmap": + cat /tmp/fileJ8XGlQ Step #2 - "srcmap": + jq '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "889c350feb179b43aa43985799910149d4eaa2bc" }' Step #2 - "srcmap": + mv /tmp/filetx06t9 /tmp/fileJ8XGlQ Step #2 - "srcmap": ++ find /src -name .svn -type d Step #2 - "srcmap": ++ find /src -name .hg -type d Step #2 - "srcmap": + '[' '' '!=' '' ']' Step #2 - "srcmap": + cat /tmp/fileJ8XGlQ Step #2 - "srcmap": + rm /tmp/fileJ8XGlQ Step #2 - "srcmap": { Step #2 - "srcmap": "/src/openbabel": { Step #2 - "srcmap": "type": "git", Step #2 - "srcmap": "url": "https://github.com/openbabel/openbabel.git", Step #2 - "srcmap": "rev": "889c350feb179b43aa43985799910149d4eaa2bc" Step #2 - "srcmap": } Step #2 - "srcmap": } Finished Step #2 - "srcmap" Starting Step #3 - "compile-afl-address-x86_64" Step #3 - "compile-afl-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": vm.mmap_rnd_bits = 28 Step #3 - "compile-afl-address-x86_64": Copying precompiled AFL++ Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": AFL++ target compilation setup: Step #3 - "compile-afl-address-x86_64": AFL_IGNORE_UNKNOWN_ENVS=1 Step #3 - "compile-afl-address-x86_64": AFL_QUIET=1 Step #3 - "compile-afl-address-x86_64": AFL_IGNORE_PROBLEMS=1 Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": done. Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": CC=/src/aflplusplus/afl-clang-fast Step #3 - "compile-afl-address-x86_64": CXX=/src/aflplusplus/afl-clang-fast++ Step #3 - "compile-afl-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope Step #3 - "compile-afl-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -stdlib=libc++ Step #3 - "compile-afl-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": + export 'CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -stdlib=libc++ -std=c++17' Step #3 - "compile-afl-address-x86_64": + CXXFLAGS='-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -stdlib=libc++ -std=c++17' Step #3 - "compile-afl-address-x86_64": + sed -i 's/CMAKE_CXX_STANDARD 11/CMAKE_CXX_STANDARD 17/g' CMakeLists.txt Step #3 - "compile-afl-address-x86_64": + sed -i 's/std::random/\/\/std::random/g' test/addhtest.cpp test/aliastest.cpp test/aligntest.cpp test/aromatest.cpp test/atom.cpp test/automorphismtest.cpp test/bond.cpp test/buildertest.cpp test/canonconsistenttest.cpp test/canonfragmenttest.cpp test/canonstabletest.cpp test/cansmi.cpp test/carspacegrouptest.cpp test/charge_gasteiger.cpp test/charge_mmff94.cpp test/cifspacegrouptest.cpp test/cistranstest.cpp test/cmlreadfile.cpp test/conversion.cpp test/conversiontest.cpp test/datatest.cpp test/ffgaff.cpp test/ffghemical.cpp test/ffmmff94.cpp test/ffuff.cpp test/formalcharge.cpp test/format.cpp test/formula.cpp test/graphsymtest.cpp test/gziptest.cpp test/implicitHtest.cpp test/inchiwrite.cpp test/internalcoord.cpp test/invalidsmarts.cpp test/invalidsmiles.cpp test/isomorphismtest.cpp test/iterators.cpp test/logp_psa.cpp test/lssrtest.cpp test/maereadertest.cpp test/math.cpp test/mmff94validate.cpp test/mol.cpp test/multicmltest.cpp test/obmolbenchmark.cpp test/obtest.cpp test/pdbreadfile.cpp test/periodictest.cpp test/phmodel.cpp test/regressionstest.cpp test/residue.cpp test/ringtest.cpp test/rotortest.cpp test/roundtrip.cpp test/shuffletest.cpp test/smartsparse.cpp test/smartstest.cpp test/smilesmatch.cpp test/smilestest.cpp test/smileytest.cpp test/spectrophoretest.cpp test/squareplanartest.cpp test/stereoperceptiontest.cpp test/stereotest.cpp test/strip.cpp test/tautomertest.cpp test/tetrahedraltest.cpp test/tetranonplanartest.cpp test/tetraplanartest.cpp test/uniqueidtest.cpp test/unitcell.cpp test/zipstream.cpp Step #3 - "compile-afl-address-x86_64": + mkdir build Step #3 - "compile-afl-address-x86_64": + cd build Step #3 - "compile-afl-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #3 - "compile-afl-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #3 - "compile-afl-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #3 - "compile-afl-address-x86_64": CMake. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #3 - "compile-afl-address-x86_64": CMake that the project does not need compatibility with older versions. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- The C compiler identification is Clang 22.0.0 Step #3 - "compile-afl-address-x86_64": -- The CXX compiler identification is Clang 22.0.0 Step #3 - "compile-afl-address-x86_64": -- Detecting C compiler ABI info Step #3 - "compile-afl-address-x86_64": -- Detecting C compiler ABI info - done Step #3 - "compile-afl-address-x86_64": -- Check for working C compiler: /src/aflplusplus/afl-clang-fast - skipped Step #3 - "compile-afl-address-x86_64": -- Detecting C compile features Step #3 - "compile-afl-address-x86_64": -- Detecting C compile features - done Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compiler ABI info Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compiler ABI info - done Step #3 - "compile-afl-address-x86_64": -- Check for working CXX compiler: /src/aflplusplus/afl-clang-fast++ - skipped Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compile features Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compile features - done Step #3 - "compile-afl-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #3 - "compile-afl-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #3 - "compile-afl-address-x86_64": of CMake. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #3 - "compile-afl-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #3 - "compile-afl-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #3 - "compile-afl-address-x86_64": behavior and not rely on setting a policy to OLD. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Using included inchi library. Step #3 - "compile-afl-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #3 - "compile-afl-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #3 - "compile-afl-address-x86_64": libxml2 not found - disabling CML support! Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #3 - "compile-afl-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #3 - "compile-afl-address-x86_64": -- Looking for conio.h Step #3 - "compile-afl-address-x86_64": -- Looking for conio.h - not found Step #3 - "compile-afl-address-x86_64": -- Looking for sys/time.h Step #3 - "compile-afl-address-x86_64": -- Looking for sys/time.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for time.h Step #3 - "compile-afl-address-x86_64": -- Looking for time.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for strings.h Step #3 - "compile-afl-address-x86_64": -- Looking for strings.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for regex.h Step #3 - "compile-afl-address-x86_64": -- Looking for regex.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for C++ include sstream Step #3 - "compile-afl-address-x86_64": -- Looking for C++ include sstream - found Step #3 - "compile-afl-address-x86_64": -- Looking for rint Step #3 - "compile-afl-address-x86_64": -- Looking for rint - found Step #3 - "compile-afl-address-x86_64": -- Looking for snprintf Step #3 - "compile-afl-address-x86_64": -- Looking for snprintf - found Step #3 - "compile-afl-address-x86_64": -- Looking for sranddev Step #3 - "compile-afl-address-x86_64": -- Looking for sranddev - not found Step #3 - "compile-afl-address-x86_64": -- Looking for strcasecmp Step #3 - "compile-afl-address-x86_64": -- Looking for strcasecmp - found Step #3 - "compile-afl-address-x86_64": -- Looking for strncasecmp Step #3 - "compile-afl-address-x86_64": -- Looking for strncasecmp - found Step #3 - "compile-afl-address-x86_64": -- Looking for xdrstdio_create Step #3 - "compile-afl-address-x86_64": -- Looking for xdrstdio_create - found Step #3 - "compile-afl-address-x86_64": -- Looking for dlopen in dl Step #3 - "compile-afl-address-x86_64": -- Looking for dlopen in dl - found Step #3 - "compile-afl-address-x86_64": -- Looking for sys/types.h Step #3 - "compile-afl-address-x86_64": -- Looking for sys/types.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for stdint.h Step #3 - "compile-afl-address-x86_64": -- Looking for stdint.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for stddef.h Step #3 - "compile-afl-address-x86_64": -- Looking for stddef.h - found Step #3 - "compile-afl-address-x86_64": -- Check size of clock_t Step #3 - "compile-afl-address-x86_64": -- Check size of clock_t - done Step #3 - "compile-afl-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #3 - "compile-afl-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #3 - "compile-afl-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #3 - "compile-afl-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #3 - "compile-afl-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #3 - "compile-afl-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #3 - "compile-afl-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #3 - "compile-afl-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #3 - "compile-afl-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #3 - "compile-afl-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #3 - "compile-afl-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #3 - "compile-afl-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #3 - "compile-afl-address-x86_64": -- Found Threads: TRUE Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #3 - "compile-afl-address-x86_64": -- Looking for getopt Step #3 - "compile-afl-address-x86_64": -- Looking for getopt - found Step #3 - "compile-afl-address-x86_64": -- GUI will not be built Step #3 - "compile-afl-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #3 - "compile-afl-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #3 - "compile-afl-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #3 - "compile-afl-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": Call Stack (most recent call first): Step #3 - "compile-afl-address-x86_64": test/CMakeLists.txt:233 (include) Step #3 - "compile-afl-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.11.13") Step #3 - "compile-afl-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #3 - "compile-afl-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #3 - "compile-afl-address-x86_64": CMake. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #3 - "compile-afl-address-x86_64": CMake that the project does not need compatibility with older versions. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Configuring done (5.8s) Step #3 - "compile-afl-address-x86_64": -- Generating done (0.1s) Step #3 - "compile-afl-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #3 - "compile-afl-address-x86_64": ++ nproc Step #3 - "compile-afl-address-x86_64": + make -j 32 Step #3 - "compile-afl-address-x86_64": [ 0%] Generating atomtyp.h Step #3 - "compile-afl-address-x86_64": [ 0%] Generating bondtyp.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating phmodeldata.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating torlib.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating resdata.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating types.h Step #3 - "compile-afl-address-x86_64": [ 2%] Generating atomizationenergies.h Step #3 - "compile-afl-address-x86_64": [ 2%] Generating spacegroups.h Step #3 - "compile-afl-address-x86_64": [ 2%] Generating ringtyp.h Step #3 - "compile-afl-address-x86_64": [ 2%] Built target data_headers Step #3 - "compile-afl-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #3 - "compile-afl-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #3 - "compile-afl-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #3 - 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"compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #3 - "compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #3 - "compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #3 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #3 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #3 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 82 | _ival=nullptr; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #3 - "compile-afl-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: /src/openbabel/src/atom.cpp:826:62: '_ival' is deprecated [-Wdeprecated-declarations]warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": 826 | 118 | if (_ival) deleteif ((*i )->IsInRin[] _ivalg(;Ge Step #3 - "compile-afl-address-x86_64": t Id| x()) & ^ Step #3 - "compile-afl-address-x86_64": & s/src/openbabel/include/openbabel/grid.ht:a105tic_cast<int>((*i)->PathSize()) =:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": = siz e) Step #3 - "compile-afl-address-x86_64": 105 |  ^ Step #3 - "compile-afl-address-x86_64": |  OB_DEPRECATED int  *_ival; /src/openbabel/include/openbabel/ring.h : 65:/5/:! < fnote: or'PathSize' has been explicitly marked deprecated here i Step #3 - "compile-afl-address-x86_64": n teger v65a | l u e s O\Bd_eDpErPeRcEaCAtTedED Step #3 - "compile-afl-address-x86_64": _ M| SG ^( Step #3 - "compile-afl-address-x86_64": "Use/src/openbabel/build/include/openbabel/babelconfig.h :S37i:z29e:( ) instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.hnote: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": :3738 | : 38 : #dnote: efexpanded from macro 'OB_DEPRECATED_MSG'in Step #3 - "compile-afl-address-x86_64": e OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1523 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1539 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1572 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 359 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 361 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 430 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 432 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 434 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 450 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 452 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 454 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 469 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 471 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 473 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 494 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 496 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 498 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 514 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 516 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 518 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 520 | else if (bond4 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 533 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273 warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": :5 1180 | rl.Set: FixAtoms(fixnote: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3e::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": d | ) ^ Step #3 - "compile-afl-address-x86_64": ;/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64":  38 | Step #3 - "compile-afl-address-x86_64": #define O |  ^ Step #3 - "compile-afl-address-x86_64": B_DEPRECATED_M/src/openbabel/include/openbabel/rotor.h:633:SG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 535 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 537 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": 633 | 273 | OB_DEPRECAT EDO_MBSG_DEPRECATED("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 539 | else if (bond4 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": _MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | /src/openbabel/src/builder.cpp:564:23: warning:  'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] #def Step #3 - "compile-afl-address-x86_64": ine OB 564 | _DEPRECATED_MSG(msg) if (bond[1 [==d VeprecatZero) Step #3 - "compile-afl-address-x86_64": | e ^ Step #3 - "compile-afl-address-x86_64": d(m/src/openbabel/include/openbabel/math/vector3.h:s273:g5:) ]note: ] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues('operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": )" )273 | OB_DEPR Step #3 - "compile-afl-address-x86_64": ECATED_MSG("U|  ^ Step #3 - "compile-afl-address-x86_64": se/src/openbabel/build/include/openbabel/babelconfig.h :v38e:c38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": to 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(mrsg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MS/src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": G(m 1213 | rotorsg) [Keys.AddRotor(rotor->GetResolution().size()); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": [deprecat 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": ed 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": (msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 566 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG([ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #3 - "compile-afl-address-x86_64": "Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(/src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": m 1301 | rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:sg)]] Step #3 - "compile-afl-address-x86_64": |  ^633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64":  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 568 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 570 | else if (bond4 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 572 | else if (bond5 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 660 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG/src/openbabel/src/forcefield.cpp:1372:32: warning: ("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  /src/openbabel/include/openbabel/rotor.h:38 | #defi449:5: note: ne OB_DEPREC'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": ATED_MSG( 449 | OB_Dmsg) [[dEPRECATepED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": r/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": ec 38 | #dated(msg)efine OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": ]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 718 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 720 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1635 | combinations *= rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1685 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1427 | if (bond1 == VZero) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2420 | if (IsNearZero(scale)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2788 | if (atom->GetVector() != VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2805 | if (!hasY && !IsNearZero(atom->y())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2826 | if (!hasX && !IsNearZero(atom->x())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3735 | if (IsNearZero(length)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3802 | if (IsNearZero(length)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB/src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": _DEP 3252RECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  | if ((*ringit)->PathSize() == 5) Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp: 3991:9: |  ^ Step #3 - "compile-afl-address-x86_64": warning: /src/openbabel/include/openbabel/ring.h:65:5: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 65 | OB_D EPRECATED_3991 | MSG("Us if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) e Size() { Step #3 - "compile-afl-address-x86_64": | instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DE ^ Step #3 - "compile-afl-address-x86_64": P/src/openbabel/include/openbabel/obutil.h:197RECATED_MSG(msg) [[:3: note: 'IsNearZero' has been explicitly marked deprecated heredeprecated Step #3 - "compile-afl-address-x86_64": (ms 197 | OB_g)]] Step #3 - "compile-afl-address-x86_64": |  ^DEPRE Step #3 - "compile-afl-address-x86_64": CATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: /src/openbabel/src/mol.cpp:3274:29:warning:  warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3274 | else  3991if ((*rin | git)->PaifthSiz (IsNearZero(thee() ==ta 6) )|| IsN Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": ea 65 | OrBZero(fabs(the_DEPRECATED_MSG(ta - M"Use Si_PI)))ze() ins { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": t/src/openbabel/include/openbabel/obutil.h:197:3: ead") Step #3 - "compile-afl-address-x86_64": |  ^note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  197 | OB/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": _DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4006 | if (IsNearZero(dl) /src/openbabel/src/mol.cpp:3343||:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3343 | loIsNearZeopSize = (r*ringit)->Pao(fabs(thSize();dl Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  - M_PI/src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here))) { Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": 65 | |  ^ Step #3 - "compile-afl-address-x86_64":  /src/openbabel/include/openbabel/obutil.h:197: 3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": OB_ 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": DE 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": PRECATED_M/src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": SG 4006 | if (IsNe("arUsZero(e Sizdle() in) || IsNearZestead"ro(f)abs(dl - Step #3 - "compile-afl-address-x86_64": M_PI))) |  ^ Step #3 - "compile-afl-address-x86_64": {/src/openbabel/build/include/openbabel/babelconfig.h:38:38: Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  /src/openbabel/include/openbabel/obutil.h:197:3:note: expanded from macro 'OB_DEPRECATED_MSG' note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": 197 | OB_D 38 | EP RECATED#define Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": OB_DEPR/src/openbabel/build/include/openbabel/babelconfig.hECATE:37D_:29: note: MSG(mexpanded from macro 'OB_DEPRECATED'sg) [[ Step #3 - "compile-afl-address-x86_64": dep 37 | recate#dd(efinmseg)]] Step #3 - "compile-afl-address-x86_64": OB_D| EPRECA ^ Step #3 - "compile-afl-address-x86_64": TED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 452 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 443 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 355 | rotor->SetDelta(delta); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 34 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #3 - "compile-afl-address-x86_64": 5 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 589 | gd->GetOriginVector(origin); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #3 - "compile-afl-address-x86_64": 51 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 321 | [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #3 - "compile-afl-address-x86_64": quadrupole.Set(i[0], i[1], value); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #3 - "compile-afl-address-x86_64": 310 | else if (vs[0][0] == '2') Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #3 - "compile-afl-address-x86_64": 911 | switch(pRD->ReactionType) Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #3 - "compile-afl-address-x86_64": 990 | switch(pRD->ReactionType) Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #3 - "compile-afl-address-x86_64": 9 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #3 - "compile-afl-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #3 - "compile-afl-address-x86_64": |  ~~~~ ^~~~ Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | gd->GetOriginVector(origin); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": 158 | switch (chirality) { Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~ Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #3 - "compile-afl-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #3 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #3 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #3 - "compile-afl-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #3 - "compile-afl-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1523 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 6 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/charges/fromfile.cpp:114:30: warning: object backing the pointer 'name' will be destroyed at the end of the full-expression [-Wdangling-assignment-gsl] Step #3 - "compile-afl-address-x86_64": 114 | char *f = name = (char*)res->GetAtomID( a ).c_str(); Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #3 - "compile-afl-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~~~~~ ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #3 - "compile-afl-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #3 - "compile-afl-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 9 warnings generated. Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 4 warnings generated. Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #3 - "compile-afl-address-x86_64": [ 75%] Built target openbabel Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #3 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #3 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:111:12: warning: null passed to a callee that requires a non-null argument [-Wnonnull] Step #3 - "compile-afl-address-x86_64": 111 | return nullptr; Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 255 | // / \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 270 | // / \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 285 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 287 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 310 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 432 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": 102 | switch (units.at(i).type) { Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": 132 | switch (units.at(i).type) { Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #3 - "compile-afl-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #3 - "compile-afl-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Linking CXX executable ../bin/obabel Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 92%] Linking CXX executable ../bin/fuzz_convert Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #3 - "compile-afl-address-x86_64": [ 95%] Built target fuzz_obconversion_smiles Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #3 - "compile-afl-address-x86_64": 7 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #3 - "compile-afl-address-x86_64": [ 96%] Built target fuzz_obconversion_sdf Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Built target roundtrip Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Built target obabel Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 98%] Built target fuzz_convert Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 190 | x = m2.Get( i, j ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 6 warnings generated. Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 17 warnings generated. Step #3 - "compile-afl-address-x86_64": 24 warnings generated. Step #3 - "compile-afl-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #3 - "compile-afl-address-x86_64": [100%] Built target test_runner Step #3 - "compile-afl-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/afl-address-x86_64/ Finished Step #3 - "compile-afl-address-x86_64" Starting Step #4 - "build-check-afl-address-x86_64" Step #4 - "build-check-afl-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #4 - "build-check-afl-address-x86_64": Unable to find image 'gcr.io/oss-fuzz-base/base-runner:latest' locally Step #4 - "build-check-afl-address-x86_64": latest: Pulling from oss-fuzz-base/base-runner Step #4 - "build-check-afl-address-x86_64": b549f31133a9: Already exists Step #4 - "build-check-afl-address-x86_64": f2a0a2122cac: Already exists Step #4 - "build-check-afl-address-x86_64": f1f49e88d4a6: Already exists Step #4 - "build-check-afl-address-x86_64": c2d1ed7b2985: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 587b3bf0e162: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": e6e2d325bb74: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": c313969456a0: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 652d2fe2a170: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 2b3e7c398e89: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 60b445a55613: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 5ff39dd04463: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 2150328a126d: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 028c31a070e2: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 6cfdcc4ee6fe: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": a5c62f49fa6a: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 77188592ea27: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": a4e1e9fcad05: Pulling fs 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"build-check-afl-address-x86_64": 0663118592da: Waiting Step #4 - "build-check-afl-address-x86_64": 8af6f9250781: Waiting Step #4 - "build-check-afl-address-x86_64": a5c62f49fa6a: Waiting Step #4 - "build-check-afl-address-x86_64": 7d9c80eb9894: Waiting Step #4 - "build-check-afl-address-x86_64": 98cc5630953c: Waiting Step #4 - "build-check-afl-address-x86_64": 77188592ea27: Waiting Step #4 - "build-check-afl-address-x86_64": 0584540d18b7: Waiting Step #4 - "build-check-afl-address-x86_64": 60b445a55613: Waiting Step #4 - "build-check-afl-address-x86_64": a4e1e9fcad05: Waiting Step #4 - "build-check-afl-address-x86_64": f57629b298b4: Waiting Step #4 - "build-check-afl-address-x86_64": 5ff39dd04463: Waiting Step #4 - "build-check-afl-address-x86_64": 5921da8d94ca: Waiting Step #4 - "build-check-afl-address-x86_64": 4cbad9dde820: Waiting Step #4 - "build-check-afl-address-x86_64": 2150328a126d: Waiting Step #4 - "build-check-afl-address-x86_64": 028c31a070e2: Waiting Step #4 - "build-check-afl-address-x86_64": 6cfdcc4ee6fe: Waiting Step #4 - "build-check-afl-address-x86_64": 6e2c907acecd: Waiting Step #4 - "build-check-afl-address-x86_64": e6e2d325bb74: Download complete Step #4 - "build-check-afl-address-x86_64": 652d2fe2a170: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 652d2fe2a170: Download complete Step #4 - "build-check-afl-address-x86_64": c2d1ed7b2985: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": c2d1ed7b2985: Download complete Step #4 - "build-check-afl-address-x86_64": c313969456a0: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": c313969456a0: Download complete Step #4 - "build-check-afl-address-x86_64": 587b3bf0e162: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 587b3bf0e162: Download complete Step #4 - "build-check-afl-address-x86_64": 5ff39dd04463: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 5ff39dd04463: Download complete Step #4 - "build-check-afl-address-x86_64": 60b445a55613: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 60b445a55613: Download complete Step #4 - "build-check-afl-address-x86_64": 2150328a126d: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 2150328a126d: Download complete Step #4 - "build-check-afl-address-x86_64": c2d1ed7b2985: Pull complete Step #4 - "build-check-afl-address-x86_64": a5c62f49fa6a: Download complete Step #4 - "build-check-afl-address-x86_64": 77188592ea27: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 77188592ea27: Download complete Step #4 - "build-check-afl-address-x86_64": 6cfdcc4ee6fe: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 6cfdcc4ee6fe: Download complete Step #4 - "build-check-afl-address-x86_64": f57629b298b4: Download complete Step #4 - "build-check-afl-address-x86_64": 4cbad9dde820: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 4cbad9dde820: Download complete Step #4 - "build-check-afl-address-x86_64": 587b3bf0e162: Pull complete Step #4 - "build-check-afl-address-x86_64": 2b3e7c398e89: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 2b3e7c398e89: Download complete Step #4 - "build-check-afl-address-x86_64": 6e2c907acecd: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 6e2c907acecd: Download complete Step #4 - "build-check-afl-address-x86_64": e6e2d325bb74: Pull complete Step #4 - "build-check-afl-address-x86_64": 65dfeedc7d7d: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 65dfeedc7d7d: Download complete Step #4 - "build-check-afl-address-x86_64": 4454ee61ee2e: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 4454ee61ee2e: Download complete Step #4 - "build-check-afl-address-x86_64": 028c31a070e2: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 028c31a070e2: Download complete Step #4 - "build-check-afl-address-x86_64": 7d9c80eb9894: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 7d9c80eb9894: Download complete Step #4 - "build-check-afl-address-x86_64": c313969456a0: Pull complete Step #4 - "build-check-afl-address-x86_64": 0663118592da: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 0663118592da: Download complete Step #4 - "build-check-afl-address-x86_64": 652d2fe2a170: Pull complete Step #4 - "build-check-afl-address-x86_64": 0584540d18b7: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 0584540d18b7: Download complete Step #4 - "build-check-afl-address-x86_64": 8af6f9250781: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 8af6f9250781: Download complete Step #4 - "build-check-afl-address-x86_64": 98cc5630953c: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 98cc5630953c: Download complete Step #4 - "build-check-afl-address-x86_64": a4e1e9fcad05: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": a4e1e9fcad05: Download complete Step #4 - "build-check-afl-address-x86_64": 5921da8d94ca: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 5921da8d94ca: Download complete Step #4 - "build-check-afl-address-x86_64": 2b3e7c398e89: Pull complete Step #4 - "build-check-afl-address-x86_64": 60b445a55613: Pull complete Step #4 - "build-check-afl-address-x86_64": 5ff39dd04463: Pull complete Step #4 - "build-check-afl-address-x86_64": 2150328a126d: Pull complete Step #4 - "build-check-afl-address-x86_64": 028c31a070e2: Pull complete Step #4 - "build-check-afl-address-x86_64": 6cfdcc4ee6fe: Pull complete Step #4 - "build-check-afl-address-x86_64": a5c62f49fa6a: Pull complete Step #4 - "build-check-afl-address-x86_64": 77188592ea27: Pull complete Step #4 - "build-check-afl-address-x86_64": a4e1e9fcad05: Pull complete Step #4 - "build-check-afl-address-x86_64": f57629b298b4: Pull complete Step #4 - "build-check-afl-address-x86_64": 5921da8d94ca: Pull complete Step #4 - "build-check-afl-address-x86_64": 4cbad9dde820: Pull complete Step #4 - "build-check-afl-address-x86_64": 6e2c907acecd: Pull complete Step #4 - "build-check-afl-address-x86_64": 8af6f9250781: Pull complete Step #4 - "build-check-afl-address-x86_64": 4454ee61ee2e: Pull complete Step #4 - "build-check-afl-address-x86_64": 65dfeedc7d7d: Pull complete Step #4 - "build-check-afl-address-x86_64": 0663118592da: Pull complete Step #4 - "build-check-afl-address-x86_64": 7d9c80eb9894: Pull complete Step #4 - "build-check-afl-address-x86_64": 98cc5630953c: Pull complete Step #4 - "build-check-afl-address-x86_64": 0584540d18b7: Pull complete Step #4 - "build-check-afl-address-x86_64": Digest: sha256:b49badd6eb754a327c78d4ec759527f5a36e54cd7e92d6aa19851cc7456c4dcd Step #4 - "build-check-afl-address-x86_64": Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-runner:latest Step #4 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmphm0r97oz/fuzz_obconversion_sdf Step #4 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmphm0r97oz/fuzz_obconversion_smiles Step #4 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmphm0r97oz/fuzz_convert Finished Step #4 - "build-check-afl-address-x86_64" Starting Step #5 Step #5: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #5 Starting Step #6 Step #6: Already have image: gcr.io/oss-fuzz/openbabel Step #6: adding: SanitizerCoverageLTO.so (deflated 69%) Step #6: adding: SanitizerCoveragePCGUARD.so (deflated 70%) Step #6: adding: afl-addseeds (deflated 57%) Step #6: adding: afl-analyze (deflated 55%) Step #6: adding: afl-c++ (deflated 57%) Step #6: adding: afl-c++.8 (deflated 55%) Step #6: adding: afl-cc (deflated 57%) Step #6: adding: afl-cc.8 (deflated 55%) Step #6: adding: afl-clang (deflated 57%) Step #6: adding: afl-clang++ (deflated 57%) Step #6: adding: afl-clang-fast (deflated 57%) Step #6: adding: afl-clang-fast++ (deflated 57%) Step #6: adding: afl-clang-fast++.8 (deflated 55%) Step #6: adding: afl-clang-fast.8 (deflated 55%) Step #6: adding: afl-clang-lto (deflated 57%) Step #6: adding: afl-clang-lto++ (deflated 57%) Step #6: adding: afl-clang-lto++.8 (deflated 55%) Step #6: adding: afl-clang-lto.8 (deflated 55%) Step #6: adding: afl-cmin (deflated 70%) Step #6: adding: afl-cmin.bash (deflated 65%) Step #6: adding: afl-cmin.py (deflated 71%) Step #6: adding: afl-compiler-rt-32.o (deflated 54%) Step #6: adding: afl-compiler-rt-64.o (deflated 67%) Step #6: adding: afl-compiler-rt.o (deflated 67%) Step #6: adding: afl-fuzz (deflated 55%) Step #6: adding: afl-g++ (deflated 57%) Step #6: adding: afl-gcc (deflated 57%) Step #6: adding: afl-gotcpu (deflated 62%) Step #6: adding: afl-ld-lto (deflated 62%) Step #6: adding: afl-llvm-dict2file.so (deflated 69%) Step #6: adding: afl-llvm-lto-instrumentlist.so (deflated 71%) Step #6: adding: afl-llvm-pass.so (deflated 69%) Step #6: adding: afl-llvm-rt-lto-32.o (deflated 20%) Step #6: adding: afl-llvm-rt-lto-64.o (deflated 20%) Step #6: adding: afl-llvm-rt-lto.o (deflated 20%) Step #6: adding: afl-lto (deflated 57%) Step #6: adding: afl-lto++ (deflated 57%) Step #6: adding: afl-lto++.8 (deflated 55%) Step #6: adding: afl-lto.8 (deflated 55%) Step #6: adding: afl-persistent-config (deflated 59%) Step #6: adding: afl-plot (deflated 65%) Step #6: adding: afl-showmap (deflated 55%) Step #6: adding: afl-system-config (deflated 63%) Step #6: adding: afl-tmin (deflated 55%) Step #6: adding: afl-whatsup (deflated 69%) Step #6: adding: afl-wine-trace (deflated 70%) Step #6: adding: afl_options.txt (deflated 20%) Step #6: adding: cmplog-instructions-pass.so (deflated 71%) Step #6: adding: cmplog-routines-pass.so (deflated 70%) Step #6: adding: cmplog-switches-pass.so (deflated 70%) Step #6: adding: compare-transform-pass.so (deflated 69%) Step #6: adding: dynamic_list.txt (deflated 76%) Step #6: adding: fuzz_convert (deflated 65%) Step #6: adding: fuzz_obconversion_sdf (deflated 65%) Step #6: adding: fuzz_obconversion_smiles (deflated 65%) Step #6: adding: injection-pass.so (deflated 70%) Step #6: adding: libAFLDriver.a (deflated 64%) Step #6: adding: libAFLQemuDriver.a (deflated 65%) Step #6: adding: llvm-symbolizer (deflated 65%) Step #6: adding: split-compares-pass.so (deflated 69%) Step #6: adding: split-switches-pass.so (deflated 70%) Finished Step #6 Starting Step #7 Step #7: Pulling image: gcr.io/oss-fuzz-base/uploader Step #7: Using default tag: latest Step #7: latest: Pulling from oss-fuzz-base/uploader Step #7: c62795f78da9: Pulling fs layer Step #7: d4fceeeb758e: Pulling fs layer Step #7: 5c9125a401ae: Pulling fs layer Step #7: 0062f774e994: Pulling fs layer Step #7: 6b33fd031fac: Pulling fs layer Step #7: 7eb39101e508: Pulling fs layer Step #7: 89257482f398: Pulling fs layer Step #7: 6b33fd031fac: Verifying Checksum Step #7: 6b33fd031fac: Download complete Step #7: 5c9125a401ae: Verifying Checksum Step #7: 5c9125a401ae: Download complete Step #7: 0062f774e994: Download complete Step #7: d4fceeeb758e: Verifying Checksum Step #7: d4fceeeb758e: Download complete Step #7: 89257482f398: Verifying Checksum Step #7: 89257482f398: Download complete Step #7: c62795f78da9: Verifying Checksum Step #7: c62795f78da9: Download complete Step #7: 7eb39101e508: Verifying Checksum Step #7: 7eb39101e508: Download complete Step #7: c62795f78da9: Pull complete Step #7: d4fceeeb758e: Pull complete Step #7: 5c9125a401ae: Pull complete Step #7: 0062f774e994: Pull complete Step #7: 6b33fd031fac: Pull complete Step #7: 7eb39101e508: Pull complete Step #7: 89257482f398: Pull complete Step #7: Digest: sha256:5717ba63d13b5515063e2a6ccad09fb5bf32a86c8e0798a363d81c2be522e411 Step #7: Status: Downloaded newer image for gcr.io/oss-fuzz-base/uploader:latest Step #7: gcr.io/oss-fuzz-base/uploader:latest Step #7: % Total % Received % Xferd Average Speed Time Time Time Current Step #7: Dload Upload Total Spent Left Speed Step #7: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 905 --:--:-- --:--:-- --:--:-- 909 Finished Step #7 Starting Step #8 Step #8: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #8: % Total % Received % Xferd Average Speed Time Time Time Current Step #8: Dload Upload Total Spent Left Speed Step #8: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 81.5M 0 0 100 81.5M 0 131M --:--:-- --:--:-- --:--:-- 131M 100 81.5M 0 0 100 81.5M 0 131M --:--:-- --:--:-- --:--:-- 131M Finished Step #8 Starting Step #9 Step #9: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #9: % Total % Received % Xferd Average Speed Time Time Time Current Step #9: Dload Upload Total Spent Left Speed Step #9: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 262 --:--:-- --:--:-- --:--:-- 263 Finished Step #9 Starting Step #10 Step #10: Already have image (with digest): gcr.io/cloud-builders/curl Step #10: % Total % Received % Xferd Average Speed Time Time Time Current Step #10: Dload Upload Total Spent Left Speed Step #10: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 189 --:--:-- --:--:-- --:--:-- 191 Finished Step #10 Starting Step #11 Step #11: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #11 Starting Step #12 - "compile-honggfuzz-address-x86_64" Step #12 - "compile-honggfuzz-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": vm.mmap_rnd_bits = 28 Step #12 - "compile-honggfuzz-address-x86_64": Skipping compilation; using precompiled honggfuzz Step #12 - "compile-honggfuzz-address-x86_64": done. Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": CC=clang Step #12 - "compile-honggfuzz-address-x86_64": CXX=clang++ Step #12 - "compile-honggfuzz-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp Step #12 - "compile-honggfuzz-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp -stdlib=libc++ Step #12 - "compile-honggfuzz-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": + export 'CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp -stdlib=libc++ -std=c++17' Step #12 - "compile-honggfuzz-address-x86_64": + CXXFLAGS='-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp -stdlib=libc++ -std=c++17' Step #12 - "compile-honggfuzz-address-x86_64": + sed -i 's/CMAKE_CXX_STANDARD 11/CMAKE_CXX_STANDARD 17/g' CMakeLists.txt Step #12 - "compile-honggfuzz-address-x86_64": + sed -i 's/std::random/\/\/std::random/g' test/addhtest.cpp test/aliastest.cpp test/aligntest.cpp test/aromatest.cpp test/atom.cpp test/automorphismtest.cpp test/bond.cpp test/buildertest.cpp test/canonconsistenttest.cpp test/canonfragmenttest.cpp test/canonstabletest.cpp test/cansmi.cpp test/carspacegrouptest.cpp test/charge_gasteiger.cpp test/charge_mmff94.cpp test/cifspacegrouptest.cpp test/cistranstest.cpp test/cmlreadfile.cpp test/conversion.cpp test/conversiontest.cpp test/datatest.cpp test/ffgaff.cpp test/ffghemical.cpp test/ffmmff94.cpp test/ffuff.cpp test/formalcharge.cpp test/format.cpp test/formula.cpp test/graphsymtest.cpp test/gziptest.cpp test/implicitHtest.cpp test/inchiwrite.cpp test/internalcoord.cpp test/invalidsmarts.cpp test/invalidsmiles.cpp test/isomorphismtest.cpp test/iterators.cpp test/logp_psa.cpp test/lssrtest.cpp test/maereadertest.cpp test/math.cpp test/mmff94validate.cpp test/mol.cpp test/multicmltest.cpp test/obmolbenchmark.cpp test/obtest.cpp test/pdbreadfile.cpp test/periodictest.cpp test/phmodel.cpp test/regressionstest.cpp test/residue.cpp test/ringtest.cpp test/rotortest.cpp test/roundtrip.cpp test/shuffletest.cpp test/smartsparse.cpp test/smartstest.cpp test/smilesmatch.cpp test/smilestest.cpp test/smileytest.cpp test/spectrophoretest.cpp test/squareplanartest.cpp test/stereoperceptiontest.cpp test/stereotest.cpp test/strip.cpp test/tautomertest.cpp test/tetrahedraltest.cpp test/tetranonplanartest.cpp test/tetraplanartest.cpp test/uniqueidtest.cpp test/unitcell.cpp test/zipstream.cpp Step #12 - "compile-honggfuzz-address-x86_64": + mkdir build Step #12 - "compile-honggfuzz-address-x86_64": + cd build Step #12 - "compile-honggfuzz-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #12 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #12 - "compile-honggfuzz-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #12 - "compile-honggfuzz-address-x86_64": CMake. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #12 - "compile-honggfuzz-address-x86_64": CMake that the project does not need compatibility with older versions. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- The C compiler identification is Clang 22.0.0 Step #12 - "compile-honggfuzz-address-x86_64": -- The CXX compiler identification is Clang 22.0.0 Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compiler ABI info Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compiler ABI info - done Step #12 - "compile-honggfuzz-address-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compile features Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compile features - done Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compiler ABI info Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compiler ABI info - done Step #12 - "compile-honggfuzz-address-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compile features Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compile features - done Step #12 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #12 - "compile-honggfuzz-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #12 - "compile-honggfuzz-address-x86_64": of CMake. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #12 - "compile-honggfuzz-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #12 - "compile-honggfuzz-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #12 - "compile-honggfuzz-address-x86_64": behavior and not rely on setting a policy to OLD. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Using included inchi library. Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #12 - "compile-honggfuzz-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #12 - "compile-honggfuzz-address-x86_64": libxml2 not found - disabling CML support! Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for conio.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for conio.h - not found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/time.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/time.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for time.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for time.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strings.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strings.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for regex.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for regex.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for C++ include sstream Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for C++ include sstream - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for rint Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for rint - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for snprintf Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for snprintf - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sranddev Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sranddev - not found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strcasecmp Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strcasecmp - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strncasecmp Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strncasecmp - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for xdrstdio_create Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for xdrstdio_create - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for dlopen in dl Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for dlopen in dl - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/types.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/types.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stdint.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stdint.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stddef.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stddef.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Check size of clock_t Step #12 - "compile-honggfuzz-address-x86_64": -- Check size of clock_t - done Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #12 - "compile-honggfuzz-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #12 - "compile-honggfuzz-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #12 - "compile-honggfuzz-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #12 - "compile-honggfuzz-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #12 - "compile-honggfuzz-address-x86_64": -- Found Threads: TRUE Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for getopt Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for getopt - found Step #12 - "compile-honggfuzz-address-x86_64": -- GUI will not be built Step #12 - "compile-honggfuzz-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #12 - "compile-honggfuzz-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #12 - "compile-honggfuzz-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #12 - "compile-honggfuzz-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": Call Stack (most recent call first): Step #12 - "compile-honggfuzz-address-x86_64": test/CMakeLists.txt:233 (include) Step #12 - "compile-honggfuzz-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.11.13") Step #12 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #12 - "compile-honggfuzz-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #12 - "compile-honggfuzz-address-x86_64": CMake. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #12 - "compile-honggfuzz-address-x86_64": CMake that the project does not need compatibility with older versions. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Configuring done (6.1s) Step #12 - "compile-honggfuzz-address-x86_64": -- Generating done (0.1s) Step #12 - "compile-honggfuzz-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #12 - "compile-honggfuzz-address-x86_64": ++ nproc Step #12 - "compile-honggfuzz-address-x86_64": + make -j 32 Step #12 - "compile-honggfuzz-address-x86_64": [ 0%] Generating atomtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 0%] Generating bondtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating resdata.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating phmodeldata.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating torlib.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating types.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating atomizationenergies.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Generating ringtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Generating spacegroups.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Built target data_headers Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 82 | _ival=nullptr; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast<int>((*i)->PathSize()) == size) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MIn file included from SG(ms/src/openbabel/src/forcefield.cpp:34: Step #12 - "compile-honggfuzz-address-x86_64": g) /src/openbabel/include/openbabel/grid.h:[[d118:11:eprecated(ms g)warning: ]] Step #12 - "compile-honggfuzz-address-x86_64": | '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_i ^ Step #12 - "compile-honggfuzz-address-x86_64": val) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #12 - "compile-honggfuzz-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1523 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1539 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1572 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()/src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]" Step #12 - "compile-honggfuzz-address-x86_64":  359 | ) if ( Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": bond/src/openbabel/build/include/openbabel/babelconfig.h1: =38:38: = VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273 Step #12 - "compile-honggfuzz-address-x86_64": :5:  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": | /src/openbabel/src/forcefield.cpp: ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 38:38:  note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 1193 | 38 | #defi ne combinatioOBns *= rotor->_DGEPRECATED_MetResoluSG(msg) [[deprecatetd(imon()sg.si)]ze(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^] Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_M/src/openbabel/src/builder.cpp:361S:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 361 | else if (bond2 == VZeroG() Step #12 - "compile-honggfuzz-address-x86_64": |  ^"S Step #12 - "compile-honggfuzz-address-x86_64": e/src/openbabel/include/openbabel/math/vector3.he Get:T273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": o273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG'rs Step #12 - "compile-honggfuzz-address-x86_64": ionValues()")38 |  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  #define OB_DEPRECATED_MSG(msg) [[depr/src/openbabel/build/include/openbabel/babelconfig.hecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": :38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1213 | rotorKeys.AddRotor(rotor/src/openbabel/src/builder.cpp:430:->GetResolu23: tionwarning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 430 | ( if) (bond1 == V.Zero) Step #12 - "compile-honggfuzz-address-x86_64": s |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: inote: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2788:29z:e ()warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2788 | 273 if (atom->)G;etVector() != Step #12 - "compile-honggfuzz-address-x86_64": VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": | /src/openbabel/include/openbabel/math/vector3.h:278:5:  ^ Step #12 - "compile-honggfuzz-address-x86_64": note: 'operator!=' has been explicitly marked deprecated here | OB_/src/openbabel/include/openbabel/rotor.h:449:5: note: D'GetResolution' has been explicitly marked deprecated hereEP Step #12 - "compile-honggfuzz-address-x86_64": RE Step #12 - "compile-honggfuzz-address-x86_64": C 449 278 | OB_DEPRECATED_MSG("Use v | e c t o r3::IsApprox()AOTED_MSG("Use vector3::IsApprox() instead.B"_D)EP Step #12 - "compile-honggfuzz-address-x86_64": R |  ^ Step #12 - "compile-honggfuzz-address-x86_64": E/src/openbabel/build/include/openbabel/babelconfig.hC:A38T:E38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": D 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": _MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 38 432 | else if |  (bo n d#2d e=f= VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": in/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": e 273 | OB_DEPRECATED Oinstead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2805 | if (!hasY && !IsNearZero(atom->y())) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2826 | if (!hasX && !IsNearZero(atom->x())) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": _MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": B/src/openbabel/build/include/openbabel/babelconfig.h:38_:D38E:P REnote: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": C A38T | E D_MSG(#mdsegf)i n[e[ dOeB_DEPRECATED_MSG(msg) [[depprerceated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": c| at ^e Step #12 - "compile-honggfuzz-address-x86_64": d(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 434 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 450 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | /src/openbabel/src/forcefield.cpp:1301 OB_DEPRECATED_MSG("Use vecto:8: warning: r3::IsApprox() instea'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": d.") 1301 |  Step #12 - "compile-honggfuzz-address-x86_64": rl.SetF |  ^ Step #12 - "compile-honggfuzz-address-x86_64": ixAtoms(fixed)/src/openbabel/build/include/openbabel/babelconfig.h:38:38: ; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 633 38 | #d:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": e 633 | fine OB OB_DEPR_DEPRECATED_MSG("ECSee SeATED_MSG(msg) [[deptFixedBonds(recated)") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": (/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG'msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 452 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 454 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG( Step #12 - "compile-honggfuzz-address-x86_64": "Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 469 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 471 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 473 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3252 | if ((/src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 494 | *r if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #defingit)->PathSize() == 5) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ine OB_DEPREC/src/openbabel/src/forcefield.cppA:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]T Step #12 - "compile-honggfuzz-address-x86_64": E D1372_ | M S G ( m s g ) [f[odreprecated( Step #12 - "compile-honggfuzz-address-x86_64": (msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": j = /src/openbabel/include/openbabel/ring.h:65:5: 0; j < rnote: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": otor->GetResolution().size(); j++) { // For each rotor position Step #12 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp: |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 496 38 | : #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 496 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:3274:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64":  3274 | else if ((*ringit)->PathSize() == 6) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 498 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsA/src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": pprox( 3343 | loopSize = (*ringit)->PathSize(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5:) instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 65 | OB 38 | #define O_B_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 514 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 516 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 518 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 520 | else if (bond4 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | /src/openbabel/src/forcefield.cpp:1444:8:  OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValu/src/openbabel/src/builder.cpp:533:es23(: warning: )"'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": ) Step #12 - "compile-honggfuzz-address-x86_64": 533 | |  ^if (bo Step #12 - "compile-honggfuzz-address-x86_64": nd1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": | /src/openbabel/build/include/openbabel/babelconfig.h:38:38: ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:note: 273:expanded from macro 'OB_DEPRECATED_MSG'5 Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": : 1482 | rotorKey[i] = genernote: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[depreactaotre.dN(exmstgI)n]t]() Step #12 - "compile-honggfuzz-address-x86_64": % ro t| or ^- Step #12 - "compile-honggfuzz-address-x86_64": >GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | /src/openbabel/src/builder.cpp : 535 #:d28e:f inewarning: OB'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]_DE Step #12 - "compile-honggfuzz-address-x86_64": P RECATED_MSG535( | m s g ) [ [ d e p r e caetl[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": se if (bond2 == Ved(msgZ)e]r]o) Step #12 - "compile-honggfuzz-address-x86_64":  | Step #12 - "compile-honggfuzz-address-x86_64":  ^| Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 537 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h/src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 633 | O:38:38: B_note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": DEP 38RECATED_M | #define OB_DEPRECATED_SG("See SetFixedBonds()")MSG(msg) Step #12 - "compile-honggfuzz-address-x86_64": [| [d ^e Step #12 - "compile-honggfuzz-address-x86_64": precat/src/openbabel/build/include/openbabel/babelconfig.he:38:38d:( msgnote: )]]expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 539 | else if (bond4 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:/src/openbabel/src/forcefield.cpp5::1635 :32:note: 'operator==' has been explicitly marked deprecated herewarning: Step #12 - "compile-honggfuzz-address-x86_64":  'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_D1635E | P R E C A TED_M SG ( c"oUmsbein avteicotnosr 3*:=: IrsoAtpopr->GetRrox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: esolution().sinote: zeexpanded from macro 'OB_DEPRECATED_MSG'() Step #12 - "compile-honggfuzz-address-x86_64": ;  Step #12 - "compile-honggfuzz-address-x86_64": | 38 ^ | Step #12 - "compile-honggfuzz-address-x86_64":   #de/src/openbabel/include/openbabel/rotor.hf:i449n:e5 :O B_Dnote: EP'GetResolution' has been explicitly marked deprecated hereRE Step #12 - "compile-honggfuzz-address-x86_64": C ATED_MSG(msg) 449[[ | d e p r OeBc_aDtEePdR(EmCsAgT)E]D]_M Step #12 - "compile-honggfuzz-address-x86_64": S G| ( ^" Step #12 - "compile-honggfuzz-address-x86_64": See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1685 | for (unsigned int j = 0; j :G23e:t Reswarning: olu'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]ti Step #12 - "compile-honggfuzz-address-x86_64": o n().size(); j564+ | + ) {  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  i/src/openbabel/include/openbabel/rotor.hf: 449(:b5o:n dnote: 1'GetResolution' has been explicitly marked deprecated here = Step #12 - "compile-honggfuzz-address-x86_64": = VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 449 | /src/openbabel/include/openbabel/math/vector3.h :OB273_:D5E:P RECnote: AT'operator==' has been explicitly marked deprecated hereED Step #12 - "compile-honggfuzz-address-x86_64": _ MSG(273 | " S e e OGBe_tDTEoPrRsEiCoAnVTaElDu_eMsS(G)("")Us Step #12 - "compile-honggfuzz-address-x86_64": e | ve ^c Step #12 - "compile-honggfuzz-address-x86_64": tor3:/src/openbabel/build/include/openbabel/babelconfig.h::I38s:A38p:p roxnote: ()expanded from macro 'OB_DEPRECATED_MSG' i Step #12 - "compile-honggfuzz-address-x86_64": n stead.38" |  )  Step #12 - "compile-honggfuzz-address-x86_64": #| de ^f Step #12 - "compile-honggfuzz-address-x86_64": ine /src/openbabel/build/include/openbabel/babelconfig.hO:B38_:D38E:P RECnote: ATexpanded from macro 'OB_DEPRECATED_MSG'ED Step #12 - "compile-honggfuzz-address-x86_64": _ MSG(m38s | g ) [ [#ddeepfriencea tOeBd_(DmEsPgR)]E]CA Step #12 - "compile-honggfuzz-address-x86_64": T E| D_ ^M Step #12 - "compile-honggfuzz-address-x86_64": SG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp/src/openbabel/src/builder.cpp::1712566::4328::  warning: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": 566 | 1712 |  f o re l(seun siigfne d(bo nidn2t == jV =Z ero0); Step #12 - "compile-honggfuzz-address-x86_64": | j ^ Step #12 - "compile-honggfuzz-address-x86_64": < rot/src/openbabel/include/openbabel/math/vector3.ho:r273-:>5G:e tRenote: so'operator==' has been explicitly marked deprecated herelu Step #12 - "compile-honggfuzz-address-x86_64": t ion()273. | s i z e (O)B_;D EjP+R+)E C{ATE Step #12 - "compile-honggfuzz-address-x86_64": D _| M ^S Step #12 - "compile-honggfuzz-address-x86_64": G("Use/src/openbabel/include/openbabel/rotor.h :v449e:c5t:o r3:note: :I'GetResolution' has been explicitly marked deprecated heresA Step #12 - "compile-honggfuzz-address-x86_64": p prox() instead.449") |  Step #12 - "compile-honggfuzz-address-x86_64": | O ^B Step #12 - "compile-honggfuzz-address-x86_64": _DEPR/src/openbabel/build/include/openbabel/babelconfig.hE:C38A:T38E:D _MSnote: G(expanded from macro 'OB_DEPRECATED_MSG'" Step #12 - "compile-honggfuzz-address-x86_64": S ee GetT38o | r s i o#ndVaelfuinees( )O"B_)DEP Step #12 - "compile-honggfuzz-address-x86_64": R E| CA ^T Step #12 - "compile-honggfuzz-address-x86_64": ED_MS/src/openbabel/build/include/openbabel/babelconfig.hG:(38m:s38g:) [[note: deexpanded from macro 'OB_DEPRECATED_MSG'pr Step #12 - "compile-honggfuzz-address-x86_64": e cated(38m | s g) ] ] #d Step #12 - "compile-honggfuzz-address-x86_64": e | fi ^n Step #12 - "compile-honggfuzz-address-x86_64": e OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43 568 | else if (bond3 : warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1719 | for (== VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^unsign Step #12 - "compile-honggfuzz-address-x86_64": ed int j = 0; j < rotor->GetResolution().size(); j++) /src/openbabel/include/openbabel/math/vector3.h:273:5{ Step #12 - "compile-honggfuzz-address-x86_64": | : note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: 273 | OB_DEPRECATED_MSG("Use vnote: ector3'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": ::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | # define OB_DEP449 | RECAT OB_DEPRECATED_ED_MSG(msgMSG("Se) e [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:/src/openbabel/src/builder.cpp1720::13:570 :warning: 28:'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 570 | 1720 | if (IsN ear(ewolrsstEe, be stE,i f1 .0e-3))( Step #12 - "compile-honggfuzz-address-x86_64": bo| n ^ Step #12 - "compile-honggfuzz-address-x86_64": d4 == VZero)/src/openbabel/include/openbabel/obutil.h:189:3: note:  Step #12 - "compile-honggfuzz-address-x86_64": 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5:  189 | OB_note: DEPR'operator==' has been explicitly marked deprecated hereECAT Step #12 - "compile-honggfuzz-address-x86_64": ED_M 273 | OSG("UsB_e DIsEApprox() PinRstEeaCd"A) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": TED_M/src/openbabel/build/include/openbabel/babelconfig.h:S38:G38:( note: "Use vector3::Iexpanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": s 38 | #dApefpinre oOBx_D(EP)RE CATED_MSG(msg)i [n[deprecastteed(amsdg)]]. Step #12 - "compile-honggfuzz-address-x86_64": "|  ^ Step #12 - "compile-honggfuzz-address-x86_64": ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: /src/openbabel/src/forcefield.cpp:1721:31: warning: note: expanded from macro 'OB_DEPRECATED_MSG''GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": 1721 | weight =38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  1 / rotor->GetResolution().size();/src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": 572 | |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB _DEPRECATED_M S G ("See GetTorsionValues()") el Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38:se if note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": (bond 38 | #define 5 OB== V_DZero)EP Step #12 - "compile-honggfuzz-address-x86_64": | RE ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: CAnote: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG(TED_MSG("Use vector3:msg:Is) Approx() inste[[dad."eprecated() Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 660 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 718 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 720 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2420 | if (IsNearZero(scale)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2539 | /src/openbabel/src/builder.cpp:if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1089 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": : 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3039 | [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": if (IsNear(e_n2, _e_n1, _econv) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1427 | if (bond1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3735 | if (IsNearZero(length)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3802 | if (IsNearZero(length)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 452 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 232 | _vres.push_back( rotor->GetResolution()); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 37449 | OB_DEPR | E C A T E#Dd_eMfSiGn(e "See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 443 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 355 | rotor->SetDelta(delta); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 34 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 5 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 589 | gd->GetOriginVector(origin); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 51 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #12 - "compile-honggfuzz-address-x86_64": 310 | else if (vs[0][0] == '2') Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 9 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 911 | switch(pRD->ReactionType) Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 990 | switch(pRD->ReactionType) Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #12 - "compile-honggfuzz-address-x86_64": 135 | stri[ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": ng path = (found == string::npos) ? "" : path.substr(0, found); Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~ ^~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | gd->GetOriginVector(origin); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 158 | switch (chirality) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #12 - "compile-honggfuzz-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #12 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #12 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #12 - "compile-honggfuzz-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #12 - "compile-honggfuzz-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1523 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/charges/fromfile.cpp:114:30: warning: object backing the pointer 'name' will be destroyed at the end of the full-expression [-Wdangling-assignment-gsl] Step #12 - "compile-honggfuzz-address-x86_64": 114 | char *f = name = (char*)res->GetAtomID( a ).c_str(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #12 - "compile-honggfuzz-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~~~~~ ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #12 - "compile-honggfuzz-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 9 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 4 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #12 - "compile-honggfuzz-address-x86_64": [ 75%] Built target openbabel Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:111:12: warning: null passed to a callee that requires a non-null argument [-Wnonnull] Step #12 - "compile-honggfuzz-address-x86_64": 111 | return nullptr; Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 255 | // / \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 270 | // / \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 285 | // \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 287 | // \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 310 | // \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 432 | // \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 102 | switch (units.at(i).type) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 132 | switch (units.at(i).type) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Linking CXX executable ../bin/obabel Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 7 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Built target fuzz_obconversion_sdf Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Built target fuzz_obconversion_smiles Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Built target roundtrip Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Built target obabel Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Built target fuzz_convert Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 190 | x = m2.Get( i, j ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 17 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 24 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #12 - "compile-honggfuzz-address-x86_64": [100%] Built target test_runner Step #12 - "compile-honggfuzz-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/honggfuzz-address-x86_64/ Finished Step #12 - "compile-honggfuzz-address-x86_64" Starting Step #13 - "build-check-honggfuzz-address-x86_64" Step #13 - "build-check-honggfuzz-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #13 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpf0t1sa0l/fuzz_obconversion_sdf Step #13 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpf0t1sa0l/fuzz_obconversion_smiles Step #13 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpf0t1sa0l/fuzz_convert Finished Step #13 - "build-check-honggfuzz-address-x86_64" Starting Step #14 Step #14: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #14 Starting Step #15 Step #15: Already have image: gcr.io/oss-fuzz/openbabel Step #15: adding: fuzz_convert (deflated 65%) Step #15: adding: fuzz_obconversion_sdf (deflated 65%) Step #15: adding: fuzz_obconversion_smiles (deflated 65%) Step #15: adding: honggfuzz (deflated 66%) Step #15: adding: llvm-symbolizer (deflated 65%) Finished Step #15 Starting Step #16 Step #16: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #16: % Total % Received % Xferd Average Speed Time Time Time Current Step #16: Dload Upload Total Spent Left Speed Step #16: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 849 --:--:-- --:--:-- --:--:-- 851 Finished Step #16 Starting Step #17 Step #17: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #17: % Total % Received % Xferd Average Speed Time Time Time Current Step #17: Dload Upload Total Spent Left Speed Step #17: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 40.1M 0 0 100 40.1M 0 62.6M --:--:-- --:--:-- --:--:-- 62.6M 100 40.1M 0 0 100 40.1M 0 62.6M --:--:-- --:--:-- --:--:-- 62.6M Finished Step #17 Starting Step #18 Step #18: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #18: % Total % Received % Xferd Average Speed Time Time Time Current Step #18: Dload Upload Total Spent Left Speed Step #18: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 267 --:--:-- --:--:-- --:--:-- 267 Finished Step #18 Starting Step #19 Step #19: Already have image (with digest): gcr.io/cloud-builders/curl Step #19: % Total % Received % Xferd Average Speed Time Time Time Current Step #19: Dload Upload Total Spent Left Speed Step #19: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 179 --:--:-- --:--:-- --:--:-- 179 Finished Step #19 Starting Step #20 Step #20: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #20 Starting Step #21 - "compile-libfuzzer-address-x86_64" Step #21 - "compile-libfuzzer-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": vm.mmap_rnd_bits = 28 Step #21 - "compile-libfuzzer-address-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": CC=clang Step #21 - "compile-libfuzzer-address-x86_64": CXX=clang++ Step #21 - "compile-libfuzzer-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link Step #21 - "compile-libfuzzer-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link -stdlib=libc++ Step #21 - "compile-libfuzzer-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": + export 'CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link -stdlib=libc++ -std=c++17' Step #21 - "compile-libfuzzer-address-x86_64": + CXXFLAGS='-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link -stdlib=libc++ -std=c++17' Step #21 - "compile-libfuzzer-address-x86_64": + sed -i 's/CMAKE_CXX_STANDARD 11/CMAKE_CXX_STANDARD 17/g' CMakeLists.txt Step #21 - "compile-libfuzzer-address-x86_64": + sed -i 's/std::random/\/\/std::random/g' test/addhtest.cpp test/aliastest.cpp test/aligntest.cpp test/aromatest.cpp test/atom.cpp test/automorphismtest.cpp test/bond.cpp test/buildertest.cpp test/canonconsistenttest.cpp test/canonfragmenttest.cpp test/canonstabletest.cpp test/cansmi.cpp test/carspacegrouptest.cpp test/charge_gasteiger.cpp test/charge_mmff94.cpp test/cifspacegrouptest.cpp test/cistranstest.cpp test/cmlreadfile.cpp test/conversion.cpp test/conversiontest.cpp test/datatest.cpp test/ffgaff.cpp test/ffghemical.cpp test/ffmmff94.cpp test/ffuff.cpp test/formalcharge.cpp test/format.cpp test/formula.cpp test/graphsymtest.cpp test/gziptest.cpp test/implicitHtest.cpp test/inchiwrite.cpp test/internalcoord.cpp test/invalidsmarts.cpp test/invalidsmiles.cpp test/isomorphismtest.cpp test/iterators.cpp test/logp_psa.cpp test/lssrtest.cpp test/maereadertest.cpp test/math.cpp test/mmff94validate.cpp test/mol.cpp test/multicmltest.cpp test/obmolbenchmark.cpp test/obtest.cpp test/pdbreadfile.cpp test/periodictest.cpp test/phmodel.cpp test/regressionstest.cpp test/residue.cpp test/ringtest.cpp test/rotortest.cpp test/roundtrip.cpp test/shuffletest.cpp test/smartsparse.cpp test/smartstest.cpp test/smilesmatch.cpp test/smilestest.cpp test/smileytest.cpp test/spectrophoretest.cpp test/squareplanartest.cpp test/stereoperceptiontest.cpp test/stereotest.cpp test/strip.cpp test/tautomertest.cpp test/tetrahedraltest.cpp test/tetranonplanartest.cpp test/tetraplanartest.cpp test/uniqueidtest.cpp test/unitcell.cpp test/zipstream.cpp Step #21 - "compile-libfuzzer-address-x86_64": + mkdir build Step #21 - "compile-libfuzzer-address-x86_64": + cd build Step #21 - "compile-libfuzzer-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #21 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #21 - "compile-libfuzzer-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #21 - "compile-libfuzzer-address-x86_64": CMake. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #21 - "compile-libfuzzer-address-x86_64": CMake that the project does not need compatibility with older versions. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- The C compiler identification is Clang 22.0.0 Step #21 - "compile-libfuzzer-address-x86_64": -- The CXX compiler identification is Clang 22.0.0 Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compiler ABI info Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compiler ABI info - done Step #21 - "compile-libfuzzer-address-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compile features Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compile features - done Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compiler ABI info Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compiler ABI info - done Step #21 - "compile-libfuzzer-address-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compile features Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compile features - done Step #21 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #21 - "compile-libfuzzer-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #21 - "compile-libfuzzer-address-x86_64": of CMake. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #21 - "compile-libfuzzer-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #21 - "compile-libfuzzer-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #21 - "compile-libfuzzer-address-x86_64": behavior and not rely on setting a policy to OLD. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Using included inchi library. Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #21 - "compile-libfuzzer-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #21 - "compile-libfuzzer-address-x86_64": libxml2 not found - disabling CML support! Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for conio.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for conio.h - not found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/time.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/time.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for time.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for time.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strings.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strings.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for regex.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for regex.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for C++ include sstream Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for C++ include sstream - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for rint Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for rint - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for snprintf Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for snprintf - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sranddev Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sranddev - not found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strcasecmp Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strcasecmp - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strncasecmp Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strncasecmp - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for xdrstdio_create Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for xdrstdio_create - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for dlopen in dl Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for dlopen in dl - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/types.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/types.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stdint.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stdint.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stddef.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stddef.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Check size of clock_t Step #21 - "compile-libfuzzer-address-x86_64": -- Check size of clock_t - done Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #21 - "compile-libfuzzer-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #21 - "compile-libfuzzer-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #21 - "compile-libfuzzer-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #21 - "compile-libfuzzer-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #21 - "compile-libfuzzer-address-x86_64": -- Found Threads: TRUE Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for getopt Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for getopt - found Step #21 - "compile-libfuzzer-address-x86_64": -- GUI will not be built Step #21 - "compile-libfuzzer-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #21 - "compile-libfuzzer-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #21 - "compile-libfuzzer-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #21 - "compile-libfuzzer-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": Call Stack (most recent call first): Step #21 - "compile-libfuzzer-address-x86_64": test/CMakeLists.txt:233 (include) Step #21 - "compile-libfuzzer-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.11.13") Step #21 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #21 - "compile-libfuzzer-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #21 - "compile-libfuzzer-address-x86_64": CMake. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #21 - "compile-libfuzzer-address-x86_64": CMake that the project does not need compatibility with older versions. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Configuring done (6.1s) Step #21 - "compile-libfuzzer-address-x86_64": -- Generating done (0.1s) Step #21 - "compile-libfuzzer-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #21 - "compile-libfuzzer-address-x86_64": ++ nproc Step #21 - "compile-libfuzzer-address-x86_64": + make -j 32 Step #21 - "compile-libfuzzer-address-x86_64": [ 0%] Generating atomtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 0%] Generating bondtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating phmodeldata.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating resdata.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating torlib.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating types.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating atomizationenergies.h Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Generating spacegroups.h Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Generating ringtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Built target data_headers Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 82 | _ival=nullptr; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast<int>((*i)->PathSize()) == size) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #21 - "compile-libfuzzer-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msIn file included from /src/openbabel/src/forcefield.cpp:34: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: g) [[d'_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": eprecated 118 | if (_i(mval) deletesg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | O/src/openbabel/src/builder.cpp:B_DEPRECA310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]T Step #21 - "compile-libfuzzer-address-x86_64": ED int *_ival 310 | ; if (bon //d2 == VZer!o || < for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": v/src/openbabel/build/include/openbabel/babelconfig.h1: 37=:=29 :V Znote: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": ero) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h: 27337 | :5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use ve ctor3:#:dIesfAipne Oprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": B_DEPR |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPERCATECATED_MSG(msgED [[depr)e [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": cated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integ/src/openbabel/src/builder.cpp:359:21: warning: er values \de'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]pr Step #21 - "compile-libfuzzer-address-x86_64": 359 | e catedif (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64":  |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": | 37 | #define OB_DE ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5P: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | RECATED [[de pOB_DreEPRECATED_MScated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": G("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 361 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 430 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 432 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 434 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 450 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 452 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 454 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 469 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 471 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 473 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() i[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": nstead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 494 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 496 | else if (bond2 == VZ/src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": e 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 1523 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | ro #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 1539 | OB_DEPOB_DEPRECATED_MSG("Use vectRECATEoDr3 Step #21 - "compile-libfuzzer-address-x86_64": :| :Is ^A Step #21 - "compile-libfuzzer-address-x86_64": ppr/src/openbabel/build/include/openbabel/babelconfig.ho:37x:(29:) i nstnote: eaexpanded from macro 'OB_DEPRECATED'd Step #21 - "compile-libfuzzer-address-x86_64": . "37 |  )  Step #21 - "compile-libfuzzer-address-x86_64": #| def ^i Step #21 - "compile-libfuzzer-address-x86_64": ne/src/openbabel/build/include/openbabel/babelconfig.h :O38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | B_DEPRECATED [[ dep r#edceaftiened ]O]B_DEPRECATE Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 518 | tD_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 498 | else if (bond3 =h=e tVaZer o=) OBF Step #21 - "compile-libfuzzer-address-x86_64": | orceFiel ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG(d::VectorTorsionDe"rUsei vvectaotri3v:e:(IdsaA,p pdbr,o xd(c), dd); instea Step #21 - "compile-libfuzzer-address-x86_64": | d ^ Step #21 - "compile-libfuzzer-address-x86_64": ."/src/openbabel/include/openbabel/forcefield.h):1572 Step #21 - "compile-libfuzzer-address-x86_64": | :5:  ^ Step #21 - "compile-libfuzzer-address-x86_64": note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h :38:38: note: expanded from macro 'OB_DEPRECATED_MSG'1572 |  Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPR38E | CA T E D # Step #21 - "compile-libfuzzer-address-x86_64": def i| ne ^ Step #21 - "compile-libfuzzer-address-x86_64": OB_DEP/src/openbabel/build/include/openbabel/babelconfig.hR:ECA37T:E29D:_ Mnote: SGexpanded from macro 'OB_DEPRECATED'(m Step #21 - "compile-libfuzzer-address-x86_64": s g) [[dep37re | c a t e#dd(msegf)i]n]e Step #21 - "compile-libfuzzer-address-x86_64": | OB ^_ Step #21 - "compile-libfuzzer-address-x86_64": DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 514 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 516 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 518 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 520 | else if (bond4 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 533 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 535 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 537 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 539 | else if (bond4 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 564 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:566:28: 1180 | warning:   'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] r Step #21 - "compile-libfuzzer-address-x86_64": l.SetFixAtoms(fixed); Step #21 - "compile-libfuzzer-address-x86_64": 566 | | else if (bo ^n Step #21 - "compile-libfuzzer-address-x86_64": d2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5/src/openbabel/include/openbabel/rotor.h:: 633:5note: : 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 |  note: OB'SetFixAtoms' has been explicitly marked deprecated here_D Step #21 - "compile-libfuzzer-address-x86_64": EPRECATED_MSG("Use vecto r6333 | : : I s AOpBp_rDoExP(R)E CiAnTstead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38E: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": D _38M | S G (  "#Sdeeef iSneet FOiBx_eDdEBPoRnEdCsA(T)ED_MSG(msg) [[de"precated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": | ) ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 568 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #def/src/openbabel/src/forcefield.cppi:n1193e: 32O:B _DEPRECATED_MSG(msg) [warning: [de'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]pr Step #21 - "compile-libfuzzer-address-x86_64": ecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  1193 | combinations *= rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("Se/src/openbabel/src/builder.cppe: 570G:etTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": 28 |  ^ Step #21 - "compile-libfuzzer-address-x86_64": : warning: /src/openbabel/build/include/openbabel/babelconfig.h:38:'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]38: Step #21 - "compile-libfuzzer-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | 570 | #define OB_D E P R E CAeTlEsDe_M SGi(fms g()b o[n[dd4e p=r=e cVaZteerdo()ms Step #21 - "compile-libfuzzer-address-x86_64": g )| ]] ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg/src/openbabel/src/forcefield.cpp):]1213]:33 Step #21 - "compile-libfuzzer-address-x86_64": : |  ^warning: Step #21 - "compile-libfuzzer-address-x86_64": 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64":  /src/openbabel/src/builder.cpp38: | 572 : 28 : #dewarning: fin'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]e Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG(msg) [ [572d | e p r e c a t e d ( m s g)e]l]se Step #21 - "compile-libfuzzer-address-x86_64":  | i ^f Step #21 - "compile-libfuzzer-address-x86_64":  (bond5 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 660 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 718 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 720 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1635 | combinations *= rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1685 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1427 | if (bond1 == VZero) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::/src/openbabel/src/forcefield.cpp:1761:45: warning: IsAp'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": prox() 1761 | foinr (unsigned int j = 0; j < rotosr->GetResolution().size(); tead.") Step #21 - "compile-libfuzzer-address-x86_64": j++) { | Step #21 - "compile-libfuzzer-address-x86_64":  ^| Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:/src/openbabel/include/openbabel/rotor.h38:: 449:5note: : note: 'GetResolution' has been explicitly marked deprecated hereexpanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #d Step #21 - "compile-libfuzzer-address-x86_64": 449 | efine OB _ D EPORBE_CDAETPERDE_CMASTGE(Dm_MsSg)G ([["dSeeper eGceattTeodr(smisongV)a]l]ue Step #21 - "compile-libfuzzer-address-x86_64": s (| )" ^ Step #21 - "compile-libfuzzer-address-x86_64": ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2420 | if (IsNearZero(scale)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2788 | if (atom->GetVector() != VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2805 | if (!hasY && !IsNearZero(atom->y())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2826 | if (!hasX && !IsNearZero(atom->x())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3735 | if (IsNearZero(length)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3802 | if (IsNearZero(length)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3252 | if ((*ringit)->PathSize() == 5) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #defin/src/openbabel/src/forcefield.cpp:3949:9: ewarning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG(m 3949 | s gif) (Is [[dNeaeprZero(recated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": length_ji)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3274:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": 3274 | else i|  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: f ((*ringit)->PathSiznote: e(expanded from macro 'OB_DEPRECATED') Step #21 - "compile-libfuzzer-address-x86_64": == 6) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define O/src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": B65_ | D E P R EOCBA_DEPRECATED_MSGT(ED" U[s[ed eSpirzee() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": cated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 452 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 443 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 355 | rotor->SetDelta(delta); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 34 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 5 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 51 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 589 | gd->GetOriginVector(origin); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #21 - "compile-libfuzzer-address-x86_64": 310 | else if (vs[0][0] == '2') Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 9 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 911 | switch(pRD->ReactionType) Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 990 | switch(pRD->ReactionType) Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #21 - "compile-libfuzzer-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~ ^~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | gd->GetOriginVector(origin); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 158 | switch (chirality) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #21 - "compile-libfuzzer-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #21 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #21 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #21 - "compile-libfuzzer-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #21 - "compile-libfuzzer-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #defi/src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9ne OB_DEPREC: warning: A'IsNearZero' is deprecated [-Wdeprecated-declarations]TE Step #21 - "compile-libfuzzer-address-x86_64": D [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  344 | if (IsNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 1523 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/charges/fromfile.cpp:114:30: warning: object backing the pointer 'name' will be destroyed at the end of the full-expression [-Wdangling-assignment-gsl] Step #21 - "compile-libfuzzer-address-x86_64": 114 | char *f = name = (char*)res->GetAtomID( a ).c_str(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": 9 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #21 - "compile-libfuzzer-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~~~~~ ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #21 - "compile-libfuzzer-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 4 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #21 - "compile-libfuzzer-address-x86_64": [ 75%] Built target openbabel Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:111:12: warning: null passed to a callee that requires a non-null argument [-Wnonnull] Step #21 - "compile-libfuzzer-address-x86_64": 111 | return nullptr; Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 255 | // / \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 270 | // / \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 285 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 287 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 310 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 432 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 102 | switch (units.at(i).type) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 132 | switch (units.at(i).type) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Linking CXX executable ../bin/obabel Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #21 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 7 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Built target fuzz_obconversion_sdf Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Built target fuzz_obconversion_smiles Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Built target roundtrip Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Built target obabel Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Built target fuzz_convert Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 190 | x = m2.Get( i, j ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": 17 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 24 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #21 - "compile-libfuzzer-address-x86_64": [100%] Built target test_runner Step #21 - "compile-libfuzzer-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-address-x86_64/ Finished Step #21 - "compile-libfuzzer-address-x86_64" Starting Step #22 - "build-check-libfuzzer-address-x86_64" Step #22 - "build-check-libfuzzer-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #22 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp84kr3s6l/fuzz_obconversion_sdf Step #22 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp84kr3s6l/fuzz_obconversion_smiles Step #22 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp84kr3s6l/fuzz_convert Finished Step #22 - "build-check-libfuzzer-address-x86_64" Starting Step #23 Step #23: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #23 Starting Step #24 Step #24: Already have image: gcr.io/oss-fuzz/openbabel Step #24: adding: fuzz_convert (deflated 67%) Step #24: adding: fuzz_obconversion_sdf (deflated 67%) Step #24: adding: fuzz_obconversion_smiles (deflated 67%) Step #24: adding: llvm-symbolizer (deflated 65%) Finished Step #24 Starting Step #25 Step #25: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #25: % Total % Received % Xferd Average Speed Time Time Time Current Step #25: Dload Upload Total Spent Left Speed Step #25: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 862 --:--:-- --:--:-- --:--:-- 864 Finished Step #25 Starting Step #26 Step #26: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #26: % Total % Received % Xferd Average Speed Time Time Time Current Step #26: Dload Upload Total Spent Left Speed Step #26: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 42.8M 0 0 100 42.8M 0 88.5M --:--:-- --:--:-- --:--:-- 88.6M Finished Step #26 Starting Step #27 Step #27: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #27: % Total % Received % Xferd Average Speed Time Time Time Current Step #27: Dload Upload Total Spent Left Speed Step #27: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 253 --:--:-- --:--:-- --:--:-- 254 Finished Step #27 Starting Step #28 Step #28: Already have image (with digest): gcr.io/cloud-builders/curl Step #28: % Total % Received % Xferd Average Speed Time Time Time Current Step #28: Dload Upload Total Spent Left Speed Step #28: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 191 --:--:-- --:--:-- --:--:-- 191 Finished Step #28 Starting Step #29 Step #29: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #29 Starting Step #30 - "compile-libfuzzer-undefined-x86_64" Step #30 - "compile-libfuzzer-undefined-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": vm.mmap_rnd_bits = 28 Step #30 - "compile-libfuzzer-undefined-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": CC=clang Step #30 - "compile-libfuzzer-undefined-x86_64": CXX=clang++ Step #30 - "compile-libfuzzer-undefined-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -fno-sanitize=function Step #30 - "compile-libfuzzer-undefined-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -stdlib=libc++ Step #30 - "compile-libfuzzer-undefined-x86_64": RUSTFLAGS=--cfg fuzzing -Cdebuginfo=1 -Cforce-frame-pointers Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": + export 'CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -stdlib=libc++ -std=c++17' Step #30 - "compile-libfuzzer-undefined-x86_64": + CXXFLAGS='-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -stdlib=libc++ -std=c++17' Step #30 - "compile-libfuzzer-undefined-x86_64": + sed -i 's/CMAKE_CXX_STANDARD 11/CMAKE_CXX_STANDARD 17/g' CMakeLists.txt Step #30 - "compile-libfuzzer-undefined-x86_64": + sed -i 's/std::random/\/\/std::random/g' test/addhtest.cpp test/aliastest.cpp test/aligntest.cpp test/aromatest.cpp test/atom.cpp test/automorphismtest.cpp test/bond.cpp test/buildertest.cpp test/canonconsistenttest.cpp test/canonfragmenttest.cpp test/canonstabletest.cpp test/cansmi.cpp test/carspacegrouptest.cpp test/charge_gasteiger.cpp test/charge_mmff94.cpp test/cifspacegrouptest.cpp test/cistranstest.cpp test/cmlreadfile.cpp test/conversion.cpp test/conversiontest.cpp test/datatest.cpp test/ffgaff.cpp test/ffghemical.cpp test/ffmmff94.cpp test/ffuff.cpp test/formalcharge.cpp test/format.cpp test/formula.cpp test/graphsymtest.cpp test/gziptest.cpp test/implicitHtest.cpp test/inchiwrite.cpp test/internalcoord.cpp test/invalidsmarts.cpp test/invalidsmiles.cpp test/isomorphismtest.cpp test/iterators.cpp test/logp_psa.cpp test/lssrtest.cpp test/maereadertest.cpp test/math.cpp test/mmff94validate.cpp test/mol.cpp test/multicmltest.cpp test/obmolbenchmark.cpp test/obtest.cpp test/pdbreadfile.cpp test/periodictest.cpp test/phmodel.cpp test/regressionstest.cpp test/residue.cpp test/ringtest.cpp test/rotortest.cpp test/roundtrip.cpp test/shuffletest.cpp test/smartsparse.cpp test/smartstest.cpp test/smilesmatch.cpp test/smilestest.cpp test/smileytest.cpp test/spectrophoretest.cpp test/squareplanartest.cpp test/stereoperceptiontest.cpp test/stereotest.cpp test/strip.cpp test/tautomertest.cpp test/tetrahedraltest.cpp test/tetranonplanartest.cpp test/tetraplanartest.cpp test/uniqueidtest.cpp test/unitcell.cpp test/zipstream.cpp Step #30 - "compile-libfuzzer-undefined-x86_64": + mkdir build Step #30 - "compile-libfuzzer-undefined-x86_64": + cd build Step #30 - "compile-libfuzzer-undefined-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #30 - "compile-libfuzzer-undefined-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #30 - "compile-libfuzzer-undefined-x86_64": CMake. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #30 - "compile-libfuzzer-undefined-x86_64": CMake that the project does not need compatibility with older versions. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- The C compiler identification is Clang 22.0.0 Step #30 - "compile-libfuzzer-undefined-x86_64": -- The CXX compiler identification is Clang 22.0.0 Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compiler ABI info Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compiler ABI info - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compile features Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compile features - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compiler ABI info Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compiler ABI info - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compile features Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compile features - done Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #30 - "compile-libfuzzer-undefined-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #30 - "compile-libfuzzer-undefined-x86_64": of CMake. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #30 - "compile-libfuzzer-undefined-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #30 - "compile-libfuzzer-undefined-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #30 - "compile-libfuzzer-undefined-x86_64": behavior and not rely on setting a policy to OLD. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Using included inchi library. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #30 - "compile-libfuzzer-undefined-x86_64": libxml2 not found - disabling CML support! Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for conio.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for conio.h - not found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/time.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/time.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for time.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for time.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strings.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strings.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for regex.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for regex.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for C++ include sstream Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for C++ include sstream - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for rint Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for rint - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for snprintf Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for snprintf - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sranddev Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sranddev - not found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strcasecmp Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strcasecmp - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strncasecmp Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strncasecmp - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for xdrstdio_create Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for xdrstdio_create - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for dlopen in dl Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for dlopen in dl - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/types.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/types.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stdint.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stdint.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stddef.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stddef.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check size of clock_t Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check size of clock_t - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #30 - "compile-libfuzzer-undefined-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found Threads: TRUE Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for getopt Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for getopt - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- GUI will not be built Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #30 - "compile-libfuzzer-undefined-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #30 - "compile-libfuzzer-undefined-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #30 - "compile-libfuzzer-undefined-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": Call Stack (most recent call first): Step #30 - "compile-libfuzzer-undefined-x86_64": test/CMakeLists.txt:233 (include) Step #30 - "compile-libfuzzer-undefined-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.11.13") Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #30 - "compile-libfuzzer-undefined-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #30 - "compile-libfuzzer-undefined-x86_64": CMake. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #30 - "compile-libfuzzer-undefined-x86_64": CMake that the project does not need compatibility with older versions. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Configuring done (4.4s) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Generating done (0.1s) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Build files have been written to: /src/openbabel/build Step #30 - "compile-libfuzzer-undefined-x86_64": ++ nproc Step #30 - "compile-libfuzzer-undefined-x86_64": + make -j 32 Step #30 - "compile-libfuzzer-undefined-x86_64": [ 0%] Generating atomtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 0%] Generating bondtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating phmodeldata.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating resdata.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating torlib.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating atomizationenergies.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating types.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Generating spacegroups.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Generating ringtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Built target data_headers Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^In file included from Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/griddata.cpp:27: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11:/src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/grid.cpp:warning: 24: Step #30 - "compile-libfuzzer-undefined-x86_64": '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28 118 | i: f warning: (_ival) del'_ival' is deprecated [-Wdeprecated-declarations]et Step #30 - "compile-libfuzzer-undefined-x86_64": e [118 | ] if ( __ival)i delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": val; Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5:  | note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 105 |  OB_DEPRECATED /src/openbabel/include/openbabel/grid.h:int 105:5: note: '_ival' has been explicitly marked deprecated here*_ival; Step #30 - "compile-libfuzzer-undefined-x86_64": //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) del/src/openbabel/src/grid.cppete :82:[5]:  warning: _'_ival' is deprecated [-Wdeprecated-declarations]iv Step #30 - "compile-libfuzzer-undefined-x86_64": al; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  82 | _ival=nullptr; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRE/src/openbabel/include/openbabel/grid.hCATED int :105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": *_ 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #definei OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": val; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 297 | if (!IsNearZero(val[2])) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast<int>((*i)->PathIn file included from /src/openbabel/src/forcefield.cpp:34: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.hSi:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations]ze() Step #30 - "compile-libfuzzer-undefined-x86_64": ) == size) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRE CATED_MSG("Use Size() 118ins | tead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  if (_i ^v Step #30 - "compile-libfuzzer-undefined-x86_64": al/src/openbabel/build/include/openbabel/babelconfig.h:38:38) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": : /src/openbabel/include/openbabel/grid.h:105:5:note: expanded from macro 'OB_DEPRECATED_MSG'  Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #note: de'_ival' has been explicitly marked deprecated herefine OB_D Step #30 - "compile-libfuzzer-undefined-x86_64": EPRECATE 105 | D_ OMSG(msgB_)DEPRECA [[deTED precated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": | i ^ Step #30 - "compile-libfuzzer-undefined-x86_64": nt *_ival; //!< for integer values \depre/src/openbabel/src/mcdlutil.cppcat:5032:95: ewarning: add explicit braces to avoid dangling else [-Wdangling-else] Step #30 - "compile-libfuzzer-undefined-x86_64": d Step #30 - "compile-libfuzzer-undefined-x86_64": 5032|  ^ | Step #30 - "compile-libfuzzer-undefined-x86_64":  /src/openbabel/build/include/openbabel/babelconfig.h :i37:29:f  note: (test2) for (j=0; jnexpanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": Bo nds()37 | ; j+ +)  #dife (bSTestfed[ij]>=0) n(*bone dLabel)[j]=1; elOse B_(*bondLabel)[j]=D0; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": EPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1523 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1539 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1572 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:310:19/src/openbabel/include/openbabel/rotor.h:: warning: 449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | if449 | ( b ond2 == VZero || v1 == VZero) {  Step #30 - "compile-libfuzzer-undefined-x86_64": OB | _ ^ Step #30 - "compile-libfuzzer-undefined-x86_64": D/src/openbabel/include/openbabel/math/vector3.h:273:5: Enote: 'operator==' has been explicitly marked deprecated herePRECAT Step #30 - "compile-libfuzzer-undefined-x86_64": ED_MSG 273( | O"See B_DEPRECATED_MSG("UGse veector3:tTorsio:nValues()"IsApprox() Step #30 - "compile-libfuzzer-undefined-x86_64": | ) ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ins/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38t | #definee OBad."_DEP) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: RECATED_MSnote: expanded from macro 'OB_DEPRECATED_MSG'G(msg) Step #30 - "compile-libfuzzer-undefined-x86_64": [38[de | precat #define OeBd_(msg)]]D Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": EPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h/src/openbabel/src/forcefield.cpp:1301:8: :warning: 273:5'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1301 | rl.SetFixAtoms(fixe: d); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPREC 633 | ATED_ OB_DEMSG("Use vePRECATED_MSctor3::IsApproG("See Setx(F) instead."ixedBo) Step #30 - "compile-libfuzzer-undefined-x86_64": nds()"| ) ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 3838 | | #defi#nde OB_eDEPRECAfiTEDn_e OMB_SDEPG(RECATED_MSG(msg)m [[deprecsg) [[ated(mdeprsg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 359 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 361 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 430 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 432 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 434 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 633 | OB_/src/openbabel/src/builder.cpp:450:23: DEwarning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": PR ECATED_MSG("See SetFixedBonds450 | ()") Step #30 - "compile-libfuzzer-undefined-x86_64": | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": 38 |  #d/src/openbabel/include/openbabel/math/vector3.he:fi273:5: ne note: O'operator==' has been explicitly marked deprecated hereB_ Step #30 - "compile-libfuzzer-undefined-x86_64": DE PRECATED_MS273G | ( m s g )O B[_[DdEePpRrEeCcAaTtEeDd_(MmSsGg()]"]Us Step #30 - "compile-libfuzzer-undefined-x86_64": e | ve ^c Step #30 - "compile-libfuzzer-undefined-x86_64": tor3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("/src/openbabel/src/builder.cppS:e452e: 28G:e tTowarning: rsi'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]on Step #30 - "compile-libfuzzer-undefined-x86_64": V alues()") Step #30 - "compile-libfuzzer-undefined-x86_64": | 452 | ^ Step #30 - "compile-libfuzzer-undefined-x86_64":   /src/openbabel/build/include/openbabel/babelconfig.h : 38 : 38 : enote: lsexpanded from macro 'OB_DEPRECATED_MSG'e Step #30 - "compile-libfuzzer-undefined-x86_64": if38 | # d(ebfoinnde2 O=B=_ DVEZPeRrEoC)AT Step #30 - "compile-libfuzzer-undefined-x86_64": E D| _M ^S Step #30 - "compile-libfuzzer-undefined-x86_64": G(msg)/src/openbabel/include/openbabel/math/vector3.h :[273[:d5e:p recnote: at'operator==' has been explicitly marked deprecated hereed Step #30 - "compile-libfuzzer-undefined-x86_64": ( msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1482 | /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rot 454 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": orKey 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": i] = generator.NextInt() % rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[depreca/src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": ted(m 469 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": s/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": g)]] Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: | [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": ^ Step #30 - "compile-libfuzzer-undefined-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64":  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 471 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 473 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:/src/openbabel/src/builder.cpp633::4945::23 : warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": note: 494 | if'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 633 |  OB_D (bonEPRECAd1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: TED_MSG("See SetFnote: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": ixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: OB_DEPRECATED_Mnote: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #definSGe OB_DEP(RE"Use vector3::IsApprCATED_MSG(msg) [[deprecox() inated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": stead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECAT/src/openbabel/src/forcefield.cpp:1635:32:E D_warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": M 1635 | combinations *= rotor-SG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": >GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("Se/src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]e Step #30 - "compile-libfuzzer-undefined-x86_64": 496 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 498 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 514 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 516 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_/src/openbabel/src/forcefield.cpp:1685:43: warning: MSG(m'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]sg Step #30 - "compile-libfuzzer-undefined-x86_64": ) 1685 | [[deprecated(msg ) ]]fo Step #30 - "compile-libfuzzer-undefined-x86_64": r | ( ^ Step #30 - "compile-libfuzzer-undefined-x86_64": un/src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 518 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": | signed int  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": j = 0; j < rot/src/openbabel/include/openbabel/math/vector3.h:273:5or->GetRe: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": solution().si 273 | OB_DEPRECATED_ze(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^MSG("U Step #30 - "compile-libfuzzer-undefined-x86_64": se vect/src/openbabel/include/openbabel/rotor.h:449:5:or3::I note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": sAppr 449 | OB_DEPRECATEox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": D_MSG(|  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": "See Ge/src/openbabel/build/include/openbabel/babelconfig.h:38:38tTorsionValu: note: es()"expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB/src/openbabel/build/include/openbabel/babelconfig.h:38:_DEPRECATED_38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": MSG(msg 38 | ) [[deprecated(msg) #defi]] Step #30 - "compile-libfuzzer-undefined-x86_64": | ne OB_ ^ Step #30 - "compile-libfuzzer-undefined-x86_64": DEPRECATED_MSG(msg) [[d/src/openbabel/src/builder.cppeprecate:d(msg)]]520 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": :28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 520 | else if (bo/src/openbabel/src/forcefield.cpp:1712:43: warning: n'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": d4 1712 | ==  for (Vunsigned Zint j e= 0; jr < rotoro->GetRe)solution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": j++) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": | /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: 449 | OB_DEP RECATED_MSG("Seenote: GetTorsio'operator==' has been explicitly marked deprecated herenValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": | Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 273 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define_MSG("Use vec OB_DEtor3::IPRECAsApprox(TED_MSG) instead."(msg) [[deprec) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ated(msg/src/openbabel/build/include/openbabel/babelconfig.h:38:38: )]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_D Step #30 - "compile-libfuzzer-undefined-x86_64": 533 | EPRECATED_M SG("Use IsAp if (bprox() instead")ond1 == VZero Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h38::27338::5: note: 'operator==' has been explicitly marked deprecated here note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64":  273 | OB_D Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define EPRECATED_MSGOB_DEPRECATED_MSG(msg) [[("Use dveeprecated(msg)ctor3::IsA]p] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": prox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG'/src/openbabel/src/forcefield.cpp:1721:31:  Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEP1721 | RECAT ED_MSG(msg) [ [wdeprecated(meight = 1 /sg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 535 | rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1761 | forelse if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  (unsigned int j = 0; j < rotor->Ge/src/openbabel/src/builder.cpp:537:28: warning: tResol'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": uti 537 | else if (bond3 == VZon().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5ero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | :5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEP OB_DEPRECATED_MSG("See GetTorRECATED_MSsionVG("Usealues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: vector3::IsApprox() i note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | nstead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": #de/src/openbabel/build/include/openbabel/babelconfig.h:38:38:fine OB_DE note: PRECATEDexpanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | _MSG(msg) [[de #defprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ine OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 539 | else if (bond4 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 564 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 566 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 568 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 570 | else if (bond4 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 572 | else if (bond5 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 660 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 718 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: /src/openbabel/src/forcefield.cpp:2420:9: warning: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2420 | if (IsNearZero(scale)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() vector3::IsApprox(instead")) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #defiinstead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: ne OB_expanded from macro 'OB_DEPRECATED_MSG'DE Step #30 - "compile-libfuzzer-undefined-x86_64": P 38 | RECATED_MS#G(dmesfign)e [OB_DEPRE[deprecated(msgC)]] Step #30 - "compile-libfuzzer-undefined-x86_64": | ATED_MSG(ms ^ Step #30 - "compile-libfuzzer-undefined-x86_64": g) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 720 | /src/openbabel/src/forcefield.cpp:2657 else if (bond2 =:= VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h11:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": : 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": warning: /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] 38 | #defin Step #30 - "compile-libfuzzer-undefined-x86_64": e OB_DEPRECATED_MSG(msg) [ [deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2788 | if (atom->GetVector() != VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2805 | if (!hasY && !IsNearZero(atom->y())) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2826 | if (!hasX && !IsNearZero(atom->x())) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:/src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1089 | mol.GetFirstAtom()->197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": GetHyb( 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": ); Step #30 - "compile-libfuzzer-undefined-x86_64": | |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h: ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 37:29: /src/openbabel/include/openbabel/mol.h:note: 287:expanded from macro 'OB_DEPRECATED'5: Step #30 - "compile-libfuzzer-undefined-x86_64": note: 37 | 'GetFirstAtom' has been explicitly marked deprecated here  Step #30 - "compile-libfuzzer-undefined-x86_64": #/src/openbabel/src/forcefield.cpp:2838: 287 | OB_D11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2838 | if (IsNeEPRECATdefinear(e_n2, _e_n1, _ecED Step #30 - "compile-libfuzzer-undefined-x86_64": | OB_DE ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29PRECATED onv) Step #30 - "compile-libfuzzer-undefined-x86_64": [[deprecat: note:  |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_ed]] Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3 |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations]: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": M 2828 | SG( "Usif (!hasY && !IsNearZero(atom->y())) Step #30 - "compile-libfuzzer-undefined-x86_64": e IsAppr |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:ox() inst197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": ead 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h"):37 Step #30 - "compile-libfuzzer-undefined-x86_64": :29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": | 37 | #def ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": i 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ne OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3252 | if ((*ringit)->PathSize() == 5) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[dep/src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": rec 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": a/src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": ted(ms 197 | g)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3719 | 3274: if (IsNearZ29: warning: e'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": r 3274o( | l _ i elsej) if (( |*r|in Igit)->PasNtheSiaze() == rZ6) Step #30 - "compile-libfuzzer-undefined-x86_64": | er ^ Step #30 - "compile-libfuzzer-undefined-x86_64": o(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: /src/openbabel/src/builder.cpp:1427:17note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Si: warning: ze() i'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": nste 1427/src/openbabel/include/openbabel/obutil.h | :197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": a197 | d " O)B_DEP Step #30 - "compile-libfuzzer-undefined-x86_64": R E| CA ^T Step #30 - "compile-libfuzzer-undefined-x86_64": ED Step #30 - "compile-libfuzzer-undefined-x86_64": | /src/openbabel/build/include/openbabel/babelconfig.h ^: Step #30 - "compile-libfuzzer-undefined-x86_64": 38:38:/src/openbabel/build/include/openbabel/babelconfig.h :37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64":  37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":   ifnote: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64":  38 | #de(/src/openbabel/src/forcefield.cppfibond1 ne OB=_DEPR=:3735:E CATE9: VZwarning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": De_ MSGr3735 | if (IsN(meoarZero(length)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": s)/src/openbabel/include/openbabel/obutil.h:197:3: note:  {g Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 'IsNearZero' has been explicitly marked deprecated here/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here) Step #30 - "compile-libfuzzer-undefined-x86_64": [[deprec 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() insta Step #30 - "compile-libfuzzer-undefined-x86_64": teea d197. | "  )OB Step #30 - "compile-libfuzzer-undefined-x86_64": _ D| E ^P Step #30 - "compile-libfuzzer-undefined-x86_64": REC/src/openbabel/build/include/openbabel/babelconfig.hA:T38E:D38: note: d(mexpanded from macro 'OB_DEPRECATED_MSG's Step #30 - "compile-libfuzzer-undefined-x86_64": g)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 38 |  Step #30 - "compile-libfuzzer-undefined-x86_64": |  # ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": define OB 37 | #_DEPRdefine ECOAB_DEPRECATED [[deprecTEDated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": _MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": :3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here # Step #30 - "compile-libfuzzer-undefined-x86_64": define OB_DEPRECATED_MSG(msg) 197[[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3802 | if (IsNearZero(length)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 452 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 443 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 355 | rotor->SetDelta(delta); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 371 | if (!IsNearZero(pcharge)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 5 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 34 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 589 | gd->GetOriginVector(origin); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | else if (vs[0][0] == '2') Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 51 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 911 | switch(pRD->ReactionType) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 990 | switch(pRD->ReactionType) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 9 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #30 - "compile-libfuzzer-undefined-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~ ^~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | gd->GetOriginVector(origin); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 158 | switch (chirality) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #30 - "compile-libfuzzer-undefined-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #30 - "compile-libfuzzer-undefined-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #30 - "compile-libfuzzer-undefined-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 441 | [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1523 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/charges/fromfile.cpp:114:30: warning: object backing the pointer 'name' will be destroyed at the end of the full-expression [-Wdangling-assignment-gsl] Step #30 - "compile-libfuzzer-undefined-x86_64": 114 | char *f = name = (char*)res->GetAtomID( a ).c_str(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #30 - "compile-libfuzzer-undefined-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~~~~~ ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #30 - "compile-libfuzzer-undefined-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 9 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 4 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #30 - "compile-libfuzzer-undefined-x86_64": [ 75%] Built target openbabel Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 102 | switch (units.at(i).type) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 132 | switch (units.at(i).type) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:111:12: warning: null passed to a callee that requires a non-null argument [-Wnonnull] Step #30 - "compile-libfuzzer-undefined-x86_64": 111 | return nullptr; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 255 | // / \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 270 | // / \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 285 | // \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 287 | // \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | // \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 432 | // \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Linking CXX executable ../bin/obabel Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Linking CXX executable ../bin/roundtrip Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Built target fuzz_obconversion_smiles Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Built target fuzz_obconversion_sdf Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 7 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Built target obabel Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Built target roundtrip Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Built target fuzz_convert Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 190 | x = m2.Get( i, j ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 17 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 24 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #30 - "compile-libfuzzer-undefined-x86_64": [100%] Built target test_runner Step #30 - "compile-libfuzzer-undefined-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-undefined-x86_64/ Finished Step #30 - "compile-libfuzzer-undefined-x86_64" Starting Step #31 - "build-check-libfuzzer-undefined-x86_64" Step #31 - "build-check-libfuzzer-undefined-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #31 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmprx29dmtb/fuzz_obconversion_sdf Step #31 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmprx29dmtb/fuzz_obconversion_smiles Step #31 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmprx29dmtb/fuzz_convert Finished Step #31 - "build-check-libfuzzer-undefined-x86_64" Starting Step #32 Step #32: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #32 Starting Step #33 Step #33: Already have image: gcr.io/oss-fuzz/openbabel Step #33: adding: fuzz_convert (deflated 71%) Step #33: adding: fuzz_obconversion_sdf (deflated 71%) Step #33: adding: fuzz_obconversion_smiles (deflated 71%) Step #33: adding: llvm-symbolizer (deflated 65%) Finished Step #33 Starting Step #34 Step #34: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #34: % Total % Received % Xferd Average Speed Time Time Time Current Step #34: Dload Upload Total Spent Left Speed Step #34: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 785 --:--:-- --:--:-- --:--:-- 788 Finished Step #34 Starting Step #35 Step #35: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #35: % Total % Received % Xferd Average Speed Time Time Time Current Step #35: Dload Upload Total Spent Left Speed Step #35: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 41.1M 0 0 100 41.1M 0 86.1M --:--:-- --:--:-- --:--:-- 86.2M Finished Step #35 Starting Step #36 Step #36: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #36: % Total % Received % Xferd Average Speed Time Time Time Current Step #36: Dload Upload Total Spent Left Speed Step #36: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 239 --:--:-- --:--:-- --:--:-- 240 Finished Step #36 Starting Step #37 Step #37: Already have image (with digest): gcr.io/cloud-builders/curl Step #37: % Total % Received % Xferd Average Speed Time Time Time Current Step #37: Dload Upload Total Spent Left Speed Step #37: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 36 0 0 100 36 0 202 --:--:-- --:--:-- --:--:-- 202 Finished Step #37 Starting Step #38 Step #38: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #38 PUSH DONE