starting build "b86b2249-a052-43f2-9419-3dfa2f62fba8" FETCHSOURCE BUILD Starting Step #0 Step #0: Already have image (with digest): gcr.io/cloud-builders/git Step #0: Cloning into 'oss-fuzz'... Finished Step #0 Starting Step #1 Step #1: Already have image (with digest): gcr.io/cloud-builders/docker Step #1: Sending build context to Docker daemon 5.12kB Step #1: Step 1/5 : FROM gcr.io/oss-fuzz-base/base-builder Step #1: latest: Pulling from oss-fuzz-base/base-builder Step #1: b549f31133a9: Pulling fs layer Step #1: 51df0d6876cd: Pulling fs layer Step #1: 38da3118a46e: Pulling fs layer Step #1: ec67c84a6d76: Pulling fs layer Step #1: 8bb7dd1116ca: Pulling fs layer Step #1: 1fb4fb3d2b01: Pulling fs layer Step #1: a7d3a0578149: Pulling fs layer Step #1: 23e3013e5b98: Pulling fs layer Step #1: 50e1ee57936a: Pulling fs layer Step #1: b46b6cdbb6f2: Pulling fs layer Step #1: c0d18e8fb1fa: Pulling fs layer Step #1: 29a663a40ba4: Pulling fs layer Step #1: d57e2535d3c0: Pulling fs layer Step #1: e530a9eecf2b: Pulling fs layer Step #1: 4f27abcdaf5d: Pulling fs layer Step #1: 81adce140048: Pulling fs layer Step #1: 1eaaa1542342: Pulling fs layer Step #1: 6becd2001539: Pulling fs layer 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c19b7fe83e8a: Pull complete Step #1: 3c6277aa8e2b: Pull complete Step #1: bcf869ca811e: Pull complete Step #1: 4a49dc7a9851: Pull complete Step #1: de9ad109123c: Pull complete Step #1: d74dccfeea37: Pull complete Step #1: 9650ce23f886: Pull complete Step #1: eaeb815cd75a: Pull complete Step #1: 3ccdc7b565ee: Pull complete Step #1: 11c03f65d6c1: Pull complete Step #1: Digest: sha256:718d1e1f9fed057967ab647b50af41708389951cff904f6fdaac999ad1b3973e Step #1: Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-builder:latest Step #1: ---> 01958c5bb573 Step #1: Step 2/5 : RUN apt-get update && apt install -y cmake Step #1: ---> Running in 56ce4501213b Step #1: Hit:1 http://security.ubuntu.com/ubuntu focal-security InRelease Step #1: Hit:2 http://archive.ubuntu.com/ubuntu focal InRelease Step #1: Get:3 http://archive.ubuntu.com/ubuntu focal-updates InRelease [128 kB] Step #1: Hit:4 http://archive.ubuntu.com/ubuntu focal-backports InRelease Step #1: Fetched 128 kB in 1s (136 kB/s) Step #1: Reading package lists... Step #1:  Step #1: WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Step #1: Step #1: Reading package lists... Step #1: Building dependency tree... Step #1: Reading state information... Step #1: The following additional packages will be installed: Step #1: cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1: Suggested packages: Step #1: cmake-doc ninja-build lrzip Step #1: The following NEW packages will be installed: Step #1: cmake cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1: 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Step #1: Need to get 15.0 MB of archives. Step #1: After this operation, 65.0 MB of additional disk space will be used. Step #1: Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libicu66 amd64 66.1-2ubuntu2.1 [8515 kB] Step #1: Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2 amd64 2.9.10+dfsg-5ubuntu0.20.04.7 [640 kB] Step #1: Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1 amd64 1.34.2-1ubuntu1.5 [80.9 kB] Step #1: Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake-data all 3.16.3-1ubuntu1.20.04.1 [1613 kB] Step #1: Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libarchive13 amd64 3.4.0-2ubuntu1.4 [327 kB] Step #1: Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] Step #1: Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] Step #1: Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake amd64 3.16.3-1ubuntu1.20.04.1 [3668 kB] Step #1: debconf: delaying package configuration, since apt-utils is not installed Step #1: Fetched 15.0 MB in 2s (8807 kB/s) Step #1: Selecting previously unselected package libicu66:amd64. Step #1: (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17393 files and directories currently installed.) Step #1: Preparing to unpack .../0-libicu66_66.1-2ubuntu2.1_amd64.deb ... Step #1: Unpacking libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1: Selecting previously unselected package libxml2:amd64. Step #1: Preparing to unpack .../1-libxml2_2.9.10+dfsg-5ubuntu0.20.04.7_amd64.deb ... Step #1: Unpacking libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.7) ... Step #1: Selecting previously unselected package libuv1:amd64. Step #1: Preparing to unpack .../2-libuv1_1.34.2-1ubuntu1.5_amd64.deb ... Step #1: Unpacking libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1: Selecting previously unselected package cmake-data. Step #1: Preparing to unpack .../3-cmake-data_3.16.3-1ubuntu1.20.04.1_all.deb ... Step #1: Unpacking cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1: Selecting previously unselected package libarchive13:amd64. Step #1: Preparing to unpack .../4-libarchive13_3.4.0-2ubuntu1.4_amd64.deb ... Step #1: Unpacking libarchive13:amd64 (3.4.0-2ubuntu1.4) ... Step #1: Selecting previously unselected package libjsoncpp1:amd64. Step #1: Preparing to unpack .../5-libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... Step #1: Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1: Selecting previously unselected package librhash0:amd64. Step #1: Preparing to unpack .../6-librhash0_1.3.9-1_amd64.deb ... Step #1: Unpacking librhash0:amd64 (1.3.9-1) ... Step #1: Selecting previously unselected package cmake. Step #1: Preparing to unpack .../7-cmake_3.16.3-1ubuntu1.20.04.1_amd64.deb ... Step #1: Unpacking cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1: Setting up libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1: Setting up libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1: Setting up librhash0:amd64 (1.3.9-1) ... Step #1: Setting up cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1: Setting up libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.7) ... Step #1: Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1: Setting up libarchive13:amd64 (3.4.0-2ubuntu1.4) ... Step #1: Setting up cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1: Processing triggers for libc-bin (2.31-0ubuntu9.16) ... Step #1: Removing intermediate container 56ce4501213b Step #1: ---> 6ee707d0cff5 Step #1: Step 3/5 : RUN git clone --depth 1 https://github.com/openbabel/openbabel.git Step #1: ---> Running in 4f6d5cc29122 Step #1: Cloning into 'openbabel'... 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Step #1: Removing intermediate container 4f6d5cc29122 Step #1: ---> 479c2e9d1c2f Step #1: Step 4/5 : COPY build.sh $SRC Step #1: ---> 3c544670a84c Step #1: Step 5/5 : WORKDIR $SRC/openbabel Step #1: ---> Running in 0042c608b821 Step #1: Removing intermediate container 0042c608b821 Step #1: ---> 4efd22634210 Step #1: Successfully built 4efd22634210 Step #1: Successfully tagged gcr.io/oss-fuzz/openbabel:latest Finished Step #1 Starting Step #2 - "srcmap" Step #2 - "srcmap": Already have image: gcr.io/oss-fuzz/openbabel Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + SRCMAP=/tmp/filelaDT4N Step #2 - "srcmap": + echo '{}' Step #2 - "srcmap": + PATHS_TO_SCAN=/src Step #2 - "srcmap": + [[ c++ == \g\o ]] Step #2 - "srcmap": ++ find /src -name .git -type d Step #2 - "srcmap": + for DOT_GIT_DIR in $(find $PATHS_TO_SCAN -name ".git" -type d) Step #2 - "srcmap": ++ dirname /src/openbabel/.git Step #2 - "srcmap": + GIT_DIR=/src/openbabel Step #2 - "srcmap": + cd /src/openbabel Step #2 - "srcmap": ++ git config --get remote.origin.url Step #2 - "srcmap": + GIT_URL=https://github.com/openbabel/openbabel.git Step #2 - "srcmap": ++ git rev-parse HEAD Step #2 - "srcmap": + GIT_REV=7acf50c9d73f8016e15eb2a45ce74c8909152883 Step #2 - "srcmap": + jq_inplace /tmp/filelaDT4N '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "7acf50c9d73f8016e15eb2a45ce74c8909152883" }' Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + F=/tmp/filejv2zBd Step #2 - "srcmap": + cat /tmp/filelaDT4N Step #2 - "srcmap": + jq '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "7acf50c9d73f8016e15eb2a45ce74c8909152883" }' Step #2 - "srcmap": + mv /tmp/filejv2zBd /tmp/filelaDT4N Step #2 - "srcmap": ++ find /src -name .svn -type d Step #2 - "srcmap": ++ find /src -name .hg -type d Step #2 - "srcmap": + '[' '' '!=' '' ']' Step #2 - "srcmap": + cat /tmp/filelaDT4N Step #2 - "srcmap": + rm /tmp/filelaDT4N Step #2 - "srcmap": { Step #2 - "srcmap": "/src/openbabel": { Step #2 - "srcmap": "type": "git", Step #2 - "srcmap": "url": "https://github.com/openbabel/openbabel.git", Step #2 - "srcmap": "rev": "7acf50c9d73f8016e15eb2a45ce74c8909152883" Step #2 - "srcmap": } Step #2 - "srcmap": } Finished Step #2 - "srcmap" Starting Step #3 - "compile-libfuzzer-coverage-x86_64" Step #3 - "compile-libfuzzer-coverage-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #3 - "compile-libfuzzer-coverage-x86_64": --------------------------------------------------------------- Step #3 - "compile-libfuzzer-coverage-x86_64": vm.mmap_rnd_bits = 28 Step #3 - "compile-libfuzzer-coverage-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #3 - "compile-libfuzzer-coverage-x86_64": --------------------------------------------------------------- Step #3 - "compile-libfuzzer-coverage-x86_64": CC=clang Step #3 - "compile-libfuzzer-coverage-x86_64": CXX=clang++ Step #3 - "compile-libfuzzer-coverage-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fprofile-instr-generate -fcoverage-mapping -pthread -Wl,--no-as-needed -Wl,-ldl -Wl,-lm -Wno-unused-command-line-argument Step #3 - "compile-libfuzzer-coverage-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fprofile-instr-generate -fcoverage-mapping -pthread -Wl,--no-as-needed -Wl,-ldl -Wl,-lm -Wno-unused-command-line-argument -stdlib=libc++ Step #3 - "compile-libfuzzer-coverage-x86_64": RUSTFLAGS=--cfg fuzzing -Cdebuginfo=1 -Cforce-frame-pointers -Cinstrument-coverage -C link-arg=-lc++ Step #3 - "compile-libfuzzer-coverage-x86_64": --------------------------------------------------------------- Step #3 - "compile-libfuzzer-coverage-x86_64": + mkdir build Step #3 - "compile-libfuzzer-coverage-x86_64": + cd build Step #3 - "compile-libfuzzer-coverage-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #3 - "compile-libfuzzer-coverage-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #3 - "compile-libfuzzer-coverage-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #3 - "compile-libfuzzer-coverage-x86_64": CMake. Step #3 - "compile-libfuzzer-coverage-x86_64": Step #3 - "compile-libfuzzer-coverage-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #3 - "compile-libfuzzer-coverage-x86_64": CMake that the project does not need compatibility with older versions. Step #3 - "compile-libfuzzer-coverage-x86_64": Step #3 - "compile-libfuzzer-coverage-x86_64":  Step #3 - "compile-libfuzzer-coverage-x86_64": -- The C compiler identification is Clang 18.1.8 Step #3 - "compile-libfuzzer-coverage-x86_64": -- The CXX compiler identification is Clang 18.1.8 Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting C compiler ABI info Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting C compiler ABI info - done Step #3 - "compile-libfuzzer-coverage-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting C compile features Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting C compile features - done Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting CXX compiler ABI info Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting CXX compiler ABI info - done Step #3 - "compile-libfuzzer-coverage-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting CXX compile features Step #3 - "compile-libfuzzer-coverage-x86_64": -- Detecting CXX compile features - done Step #3 - "compile-libfuzzer-coverage-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #3 - "compile-libfuzzer-coverage-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #3 - "compile-libfuzzer-coverage-x86_64": of CMake. Step #3 - "compile-libfuzzer-coverage-x86_64": Step #3 - "compile-libfuzzer-coverage-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #3 - "compile-libfuzzer-coverage-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #3 - "compile-libfuzzer-coverage-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #3 - "compile-libfuzzer-coverage-x86_64": behavior and not rely on setting a policy to OLD. Step #3 - "compile-libfuzzer-coverage-x86_64": Step #3 - "compile-libfuzzer-coverage-x86_64":  Step #3 - "compile-libfuzzer-coverage-x86_64": -- Using included inchi library. Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #3 - "compile-libfuzzer-coverage-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #3 - "compile-libfuzzer-coverage-x86_64": libxml2 not found - disabling CML support! Step #3 - "compile-libfuzzer-coverage-x86_64": Step #3 - "compile-libfuzzer-coverage-x86_64":  Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for conio.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for conio.h - not found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for sys/time.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for sys/time.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for time.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for time.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for strings.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for strings.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for rpc/xdr.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for rpc/xdr.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for regex.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for regex.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for C++ include sstream Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for C++ include sstream - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for rint Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for rint - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for snprintf Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for snprintf - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for sranddev Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for sranddev - not found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for strcasecmp Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for strcasecmp - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for strncasecmp Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for strncasecmp - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for dlopen in dl Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for dlopen in dl - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for sys/types.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for sys/types.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for stdint.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for stdint.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for stddef.h Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for stddef.h - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- Check size of clock_t Step #3 - "compile-libfuzzer-coverage-x86_64": -- Check size of clock_t - done Step #3 - "compile-libfuzzer-coverage-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #3 - "compile-libfuzzer-coverage-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #3 - "compile-libfuzzer-coverage-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #3 - "compile-libfuzzer-coverage-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-1.1.0. Step #3 - "compile-libfuzzer-coverage-x86_64": -- JSON formats will be supported. Using RapidJSON 1.1.0 at /src/openbabel/external/rapidjson-1.1.0/include Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #3 - "compile-libfuzzer-coverage-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #3 - "compile-libfuzzer-coverage-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #3 - "compile-libfuzzer-coverage-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #3 - "compile-libfuzzer-coverage-x86_64": -- Found Threads: TRUE Step #3 - "compile-libfuzzer-coverage-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for getopt Step #3 - "compile-libfuzzer-coverage-x86_64": -- Looking for getopt - found Step #3 - "compile-libfuzzer-coverage-x86_64": -- GUI will not be built Step #3 - "compile-libfuzzer-coverage-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #3 - "compile-libfuzzer-coverage-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #3 - "compile-libfuzzer-coverage-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #3 - "compile-libfuzzer-coverage-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #3 - "compile-libfuzzer-coverage-x86_64": Step #3 - "compile-libfuzzer-coverage-x86_64": Call Stack (most recent call first): Step #3 - "compile-libfuzzer-coverage-x86_64": test/CMakeLists.txt:233 (include) Step #3 - "compile-libfuzzer-coverage-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #3 - "compile-libfuzzer-coverage-x86_64":  Step #3 - "compile-libfuzzer-coverage-x86_64": -- Found PythonInterp: /usr/local/bin/python3.8 (found version "3.8.3") Step #3 - "compile-libfuzzer-coverage-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #3 - "compile-libfuzzer-coverage-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #3 - "compile-libfuzzer-coverage-x86_64": CMake. Step #3 - "compile-libfuzzer-coverage-x86_64": Step #3 - "compile-libfuzzer-coverage-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #3 - "compile-libfuzzer-coverage-x86_64": CMake that the project does not need compatibility with older versions. Step #3 - "compile-libfuzzer-coverage-x86_64": Step #3 - "compile-libfuzzer-coverage-x86_64":  Step #3 - "compile-libfuzzer-coverage-x86_64": -- Configuring done (3.4s) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Generating done (0.1s) Step #3 - "compile-libfuzzer-coverage-x86_64": -- Build files have been written to: /src/openbabel/build Step #3 - "compile-libfuzzer-coverage-x86_64": ++ nproc Step #3 - "compile-libfuzzer-coverage-x86_64": + make -j 32 Step #3 - "compile-libfuzzer-coverage-x86_64": [ 0%] Generating atomtyp.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 0%] Generating bondtyp.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 1%] Generating resdata.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 1%] Generating phmodeldata.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 1%] Generating torlib.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 1%] Generating types.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 1%] Generating atomizationenergies.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 2%] Generating spacegroups.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 2%] Generating ringtyp.h Step #3 - "compile-libfuzzer-coverage-x86_64": [ 2%] Built target data_headers Step #3 - "compile-libfuzzer-coverage-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 82 | _ival=nullptr; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 297 | if (!IsNearZero(val[2])) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #3 - "compile-libfuzzer-coverage-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 1523 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 1539 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 1572 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 359 | if (bond1 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 361 | else if (bond2 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 430 | if (bond1 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 432 | else if (bond2 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 434 | else if (bond3 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 450 | if (bond1 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 452 | else if (bond2 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 454 | else if (bond3 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 469 | if (bond1 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 471 | else if (bond2 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 473 | else if (bond3 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 494 | if (bond1 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 496 | else if (bond2 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG/src/openbabel/src/forcefield.cpp(:msg) [[de1180:8: precated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1180 | /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 498 | else if (bo nd3 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64":  /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": rl. S38etF | i x A t o#mdse(ffiinxe OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": ed); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues(/src/openbabel/src/builder.cpp):"514):23 Step #3 - "compile-libfuzzer-coverage-x86_64": : |  ^warning: Step #3 - "compile-libfuzzer-coverage-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]/src/openbabel/build/include/openbabel/babelconfig.h Step #3 - "compile-libfuzzer-coverage-x86_64": :38:38 :514 |   note:  expanded from macro 'OB_DEPRECATED_MSG'  Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | i f #(dbeofnidn1e =O=B _VDZEePrRoE)CA Step #3 - "compile-libfuzzer-coverage-x86_64": T E| D_ ^M Step #3 - "compile-libfuzzer-coverage-x86_64": SG(ms/src/openbabel/include/openbabel/math/vector3.hg:)273 :[5[:d eprnote: ec'operator==' has been explicitly marked deprecated hereat Step #3 - "compile-libfuzzer-coverage-x86_64": ed(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": 273| |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64":  OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38/src/openbabel/src/builder.cpp:: 516:28note: : expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": warning:  38'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] |  Step #3 - "compile-libfuzzer-coverage-x86_64": 516# | d e f i n e O B _ D E PeRlEsCeA TiEfD _(MbSoGn(dm2s g=)= [[depre cVaZteerdo()ms Step #3 - "compile-libfuzzer-coverage-x86_64": g )| ]] ^ Step #3 - "compile-libfuzzer-coverage-x86_64":  Step #3 - "compile-libfuzzer-coverage-x86_64":  /src/openbabel/include/openbabel/math/vector3.h| :273 ^: Step #3 - "compile-libfuzzer-coverage-x86_64": 5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 518 | else if (bond3 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 520 | else if (bond4 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DE/src/openbabel/src/forcefield.cppP:R1301E:C8A:T ED_warning: MSG'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations](m Step #3 - "compile-libfuzzer-coverage-x86_64": s g1301) | [ [ d erplr.eSceattFeidx(Amtsogm)s](]fi Step #3 - "compile-libfuzzer-coverage-x86_64": x e| d) ^; Step #3 - "compile-libfuzzer-coverage-x86_64":  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 533 | if (bond1 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 535 | else if (bond2 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 537 | else if (bond3 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 539 | else if (bond4 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 564 | if (bond1 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 566 | else if (bond2 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 568 | else if (bond3 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 570 | else if (bond4 == /src/openbabel/src/forcefield.cppV:Zero1372):32 Step #3 - "compile-libfuzzer-coverage-x86_64": : |  ^warning: Step #3 - "compile-libfuzzer-coverage-x86_64": 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]/src/openbabel/include/openbabel/math/vector3.h: Step #3 - "compile-libfuzzer-coverage-x86_64": 273:5: 1372 |  note:  'operator==' has been explicitly marked deprecated here  Step #3 - "compile-libfuzzer-coverage-x86_64": f273o | r ( j O=B _0D;E PjR EGG(e"tURsees ovleucttioorn3(:):.IssiAzpep(r)o;x (j)+ +i)n s{t e/a/d .F"o)r Step #3 - "compile-libfuzzer-coverage-x86_64": e a| ch ^ Step #3 - "compile-libfuzzer-coverage-x86_64": rot/src/openbabel/build/include/openbabel/babelconfig.ho:r38 :p38o:s itinote: onexpanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": Step #3 - "compile-libfuzzer-coverage-x86_64": | 38 | ^ Step #3 - "compile-libfuzzer-coverage-x86_64":  #de/src/openbabel/include/openbabel/rotor.hf:i449n:e5 :O B_Dnote: EP'GetResolution' has been explicitly marked deprecated hereR Step #3 - "compile-libfuzzer-coverage-x86_64": E449C | A T E D _OMBS_GD(EmPsRgE)C A[T[EdDe_pMrSeGc(a"tSeede( mGsegt)T]o]rs Step #3 - "compile-libfuzzer-coverage-x86_64": i o| nV ^a Step #3 - "compile-libfuzzer-coverage-x86_64": lues()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 572 | else if (bond5 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 660 | if (bond1 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 718 | if (bond1 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("U/src/openbabel/src/forcefield.cpps:e1444 :v8e:c torwarning: 3::'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations]Is Step #3 - "compile-libfuzzer-coverage-x86_64": Ap p1444r | o x ( ) riln.sSteetaFdi.x"A)to Step #3 - "compile-libfuzzer-coverage-x86_64": m s| (f ^i Step #3 - "compile-libfuzzer-coverage-x86_64": xed);/src/openbabel/build/include/openbabel/babelconfig.h: Step #3 - "compile-libfuzzer-coverage-x86_64": 38 :| 38: ^ Step #3 - "compile-libfuzzer-coverage-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG'/src/openbabel/include/openbabel/rotor.h Step #3 - "compile-libfuzzer-coverage-x86_64": : 63338: | 5 :  #note: de'SetFixAtoms' has been explicitly marked deprecated herefi Step #3 - "compile-libfuzzer-coverage-x86_64": ne O B633_ | D E P R EOCBA_TDEEDP_RMESCGA(TmEsDg_)M S[G[(d"eSperee cSaetteFdi(xmesdgB)o]n]ds Step #3 - "compile-libfuzzer-coverage-x86_64": ( )| ") ^ Step #3 - "compile-libfuzzer-coverage-x86_64": Step #3 - "compile-libfuzzer-coverage-x86_64":  |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 720 | else if (bond2 == VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38/src/openbabel/src/forcefield.cpp:: 1457:32note: : expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": warning:  'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]38 | Step #3 - "compile-libfuzzer-coverage-x86_64": #1457d | e f i n e O B _cDoEmPbRiEnCaAtTiEoDn_sM S*G=( mrsogt)o r[-[>dGeeptrReecsaotleudt(imosng())].]si Step #3 - "compile-libfuzzer-coverage-x86_64": z e| () ^; Step #3 - "compile-libfuzzer-coverage-x86_64":  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/mol.cpp:2786:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 2786 | if (atom->GetVector() != VZero) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/mol.cpp:2801:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 2801 | if (!hasX && !IsNearZero(atom->x())) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 2803 | if (!hasY && !IsNearZero(atom->y())) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/mol.cpp:2824:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 2824 | if (!hasX && !IsNearZero(atom->x())) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 2826 | if (!hasY && !IsNearZero(atom->y())) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 2828 | if (!hasZ && !IsNearZero(atom->z())) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 287 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1635 | combinations *= rotor->GetResolution().size(); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1685 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38/src/openbabel/src/mol.cpp:3250:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": | #d3250 | if ((*ringitefine OB_DEPR)-ECAT>ED_MSG(msg) [[deprePacated(msg)]t]hSize() == 5) Step #3 - "compile-libfuzzer-coverage-x86_64": Step #3 - "compile-libfuzzer-coverage-x86_64": | |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64":  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().s/src/openbabel/src/mol.cpp:ize()3272:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": ; 3272 | else i j++) { Step #3 - "compile-libfuzzer-coverage-x86_64": f ((*ringit)->PathSize() == 6) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 65 | OB_D E|  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": PRECAT/src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": ED_M 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": SG("Use Size() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: /src/openbabel/build/include/openbabel/babelconfig.hnote: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) :38:38[[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": : note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1427 | if (bond1 == VZero) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^/src/openbabel/src/mol.cpp:3341:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64":  Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h :334138 | : 38 : loopSize = (note: *riexpanded from macro 'OB_DEPRECATED_MSG'ng Step #3 - "compile-libfuzzer-coverage-x86_64": it) -38> | P a t h Si#defiznee( )O;B_ Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": D/src/openbabel/include/openbabel/ring.h:65:5: Enote: PR'PathSize' has been explicitly marked deprecated hereE Step #3 - "compile-libfuzzer-coverage-x86_64": CATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64":  65 | OB_DEPRECATED_MSG("Use Size() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 2420 | if (IsNearZero(scale)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 3735 | if (IsNearZero(length)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 3802 | if (IsNearZero(length)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 3949 | [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": if (IsNearZero(length_ji)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 2 warnings[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 3 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 452 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 443 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 355 | roto/src/openbabel/src/rotamer.cpp:232:32: r->SetDelta(delta)warning: ; Step #3 - "compile-libfuzzer-coverage-x86_64": 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]|  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: Step #3 - "compile-libfuzzer-coverage-x86_64": note: 'SetDelta' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 428 | 232 | _vres.push_back(rotor->G etR esolution()); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64":  /src/openbabel/include/openbabel/rotor.h OB_DEPRE:CA449TED_MSG("Has no effect:5.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": :/src/openbabel/build/include/openbabel/babelconfig.h :38:38: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64":  449 | OB_DEnote: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": P38 | #defiRne OB_DEPRECATED_MSG(msg) E[[depCreAcTated(msgE)]]D_ Step #3 - "compile-libfuzzer-coverage-x86_64": MS |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": G("See GetTorsionValues()") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 3 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 371 | if (!IsNearZero(pcharge)) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 34 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 5 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 589 | gd->GetOriginVector(origin); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 51 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #3 - "compile-libfuzzer-coverage-x86_64": 310 | else if (vs[0][0] == '2') Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 9 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #3 - "compile-libfuzzer-coverage-x86_64": 911 | switch(pRD->ReactionType) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #3 - "compile-libfuzzer-coverage-x86_64": 990 | switch(pRD->ReactionType) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 3 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #3 - "compile-libfuzzer-coverage-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~ ^~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 275 | gd->GetOriginVector(origin); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 287 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 287 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 2 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #3 - "compile-libfuzzer-coverage-x86_64": 158 | switch (chirality) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^~~~~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #3 - "compile-libfuzzer-coverage-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-libfuzzer-coverage-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~ ^~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-libfuzzer-coverage-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~~~~^~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-libfuzzer-coverage-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~ ^~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-libfuzzer-coverage-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~~~~^~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-libfuzzer-coverage-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~ ^~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-libfuzzer-coverage-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~~~~^~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-libfuzzer-coverage-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-libfuzzer-coverage-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~~~~^~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-libfuzzer-coverage-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-libfuzzer-coverage-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~~~~^~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-libfuzzer-coverage-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-libfuzzer-coverage-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~~~~^~ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #3 - "compile-libfuzzer-coverage-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #3 - "compile-libfuzzer-coverage-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #3 - "compile-libfuzzer-coverage-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 2 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": 6 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 1523 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 2 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #3 - "compile-libfuzzer-coverage-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ~~~~~~~~~~~ ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #3 - "compile-libfuzzer-coverage-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #3 - "compile-libfuzzer-coverage-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": 9 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-libfuzzer-coverage-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": 4 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": 1 warning generated. Step #3 - "compile-libfuzzer-coverage-x86_64": 2 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 76%] Linking CXX static library libopenbabel.a Step #3 - "compile-libfuzzer-coverage-x86_64": [ 76%] Built target openbabel Step #3 - "compile-libfuzzer-coverage-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-libfuzzer-coverage-x86_64": 255 | // / \  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-libfuzzer-coverage-x86_64": 270 | // / \  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-libfuzzer-coverage-x86_64": 285 | // \  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-libfuzzer-coverage-x86_64": 287 | // \  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-libfuzzer-coverage-x86_64": 310 | // \  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-libfuzzer-coverage-x86_64": 432 | // \  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #3 - "compile-libfuzzer-coverage-x86_64": 102 | switch (units.at(i).type) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^~~~~~~~~~~~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #3 - "compile-libfuzzer-coverage-x86_64": 132 | switch (units.at(i).type) { Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^~~~~~~~~~~~~~~~ Step #3 - "compile-libfuzzer-coverage-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #3 - "compile-libfuzzer-coverage-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #3 - "compile-libfuzzer-coverage-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #3 - "compile-libfuzzer-coverage-x86_64": [ 89%] Linking CXX executable ../bin/obabel Step #3 - "compile-libfuzzer-coverage-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 3 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 6 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": 2 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 190 | x = m2.Get( i, j ); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[/src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value frodm JOELepib2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.hr:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | ecated(msg)]] OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64":  Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 327 | Diagonal.Set(1, 1/src/openbabel/test/logp_psa.cpp:85:7,: Diwarning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 85 | if (IsNear(psa ,a 29.46)) { // value from JgOoEnLal.ib2Ge Step #3 - "compile-libfuzzer-coverage-x86_64": t|  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": (0,0)+fabs(ra/src/openbabel/include/openbabel/obutil.h:189:3: ndomizer.Nenote: 'IsNear' has been explicitly marked deprecated herextFloat())) Step #3 - "compile-libfuzzer-coverage-x86_64": ; 189 | Step #3 - "compile-libfuzzer-coverage-x86_64": | OB_DEP ^RECATED Step #3 - "compile-libfuzzer-coverage-x86_64": _MSG("Use /src/openbabel/include/openbabel/math/matrix3x3.h:171Is:App7rox() ins:tea d"note: 'Get' has been explicitly marked deprecated here) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64":  Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRE171 | CA TE D_ MS G( msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": O| B ^ Step #3 - "compile-libfuzzer-coverage-x86_64": _DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diwarning: ago'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]n Step #3 - "compile-libfuzzer-coverage-x86_64": 95 | if (IsNeaalr.(logP, 2.58G1et5)) { // Value from JOELib2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(m(sg)2,2) ) ); [[d Step #3 - "compile-libfuzzer-coverage-x86_64": e p| re ^ Step #3 - "compile-libfuzzer-coverage-x86_64": cated(ms/src/openbabel/include/openbabel/math/matrix3x3.h:171:7g)]] Step #3 - "compile-libfuzzer-coverage-x86_64": | : ^ Step #3 - "compile-libfuzzer-coverage-x86_64":  note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h/src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 360 | rnd.Set:(0,1, rnd.Get(1,0)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here38 Step #3 - "compile-libfuzzer-coverage-x86_64": :38: 188 | OB_DEPRE note: CATED_expanded from macro 'OB_DEPRECATED_MSG'MSG("use the non-constant operator() inste Step #3 - "compile-libfuzzer-coverage-x86_64": 38ad") | Step #3 - "compile-libfuzzer-coverage-x86_64": | # ^d Step #3 - "compile-libfuzzer-coverage-x86_64": efine /src/openbabel/build/include/openbabel/babelconfig.hO:B38_:D38EP:R ECATEnote: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38D_MS | G ( m s#gd)e f[i[dneepr eOcBa_tDeEdP(RmEsCgA)T]]E Step #3 - "compile-libfuzzer-coverage-x86_64": D _| MS ^G Step #3 - "compile-libfuzzer-coverage-x86_64": (msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^/src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": Step #3 - "compile-libfuzzer-coverage-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 188 | OB_DEPRECATED_MSG("use the non-con #define OB_DEPRECATED_MSG(mssg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": tant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": | /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 119 | if ^ (IsNear(p Step #3 - "compile-libfuzzer-coverage-x86_64": sa, 29.1)) { // Value from JOELib2 Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("/src/openbabel/test/math.cpp:362U:s20e: IsAwarning: ppr'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations]ox Step #3 - "compile-libfuzzer-coverage-x86_64": () i362n | s t erandd".)Se Step #3 - "compile-libfuzzer-coverage-x86_64": t (| 1, ^2 Step #3 - "compile-libfuzzer-coverage-x86_64": , rn/src/openbabel/build/include/openbabel/babelconfig.hd:.38G:e38t:( 2,1note: ))expanded from macro 'OB_DEPRECATED_MSG'; Step #3 - "compile-libfuzzer-coverage-x86_64": Step #3 - "compile-libfuzzer-coverage-x86_64": | 38 ^ | Step #3 - "compile-libfuzzer-coverage-x86_64":   /src/openbabel/include/openbabel/math/matrix3x3.h#:d171e:f7i:n e Onote: B_'Get' has been explicitly marked deprecated hereDE Step #3 - "compile-libfuzzer-coverage-x86_64": P R171E | C A T E D _ MOSBG_(DmEsPgR)E C[A[TdEeDp_rMeScGa(t"eud(smes gt)h]e] c Step #3 - "compile-libfuzzer-coverage-x86_64": o n| st ^a Step #3 - "compile-libfuzzer-coverage-x86_64": nt operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": 6 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": 17 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-libfuzzer-coverage-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-libfuzzer-coverage-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-libfuzzer-coverage-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-libfuzzer-coverage-x86_64": |  ^ Step #3 - "compile-libfuzzer-coverage-x86_64": 24 warnings generated. Step #3 - "compile-libfuzzer-coverage-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #3 - "compile-libfuzzer-coverage-x86_64": [100%] Built target fuzz_obconversion_smiles Step #3 - "compile-libfuzzer-coverage-x86_64": [100%] Built target fuzz_obconversion_sdf Step #3 - "compile-libfuzzer-coverage-x86_64": [100%] Built target roundtrip Step #3 - "compile-libfuzzer-coverage-x86_64": [100%] Built target obabel Step #3 - "compile-libfuzzer-coverage-x86_64": [100%] Built target test_runner Step #3 - "compile-libfuzzer-coverage-x86_64": + cp bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-coverage-x86_64/ Finished Step #3 - "compile-libfuzzer-coverage-x86_64" Starting Step #4 Step #4: Pulling image: gcr.io/oss-fuzz-base/base-runner Step #4: Using default tag: latest Step #4: latest: Pulling from oss-fuzz-base/base-runner Step #4: b549f31133a9: Already exists Step #4: 51df0d6876cd: Already exists Step #4: 38da3118a46e: Already exists Step #4: 76485c50adab: Pulling fs layer Step #4: 6e454ec0415e: Pulling fs layer Step #4: fcc56198b7b3: Pulling fs layer Step #4: 839d42049c75: Pulling fs layer Step #4: 9b7f47b799be: Pulling fs layer Step #4: 885b716fb19d: Pulling fs layer Step #4: 1f82e1e2eaac: Pulling fs layer Step #4: 3582fe5817de: Pulling fs layer Step #4: a221f9a44ef5: Pulling fs layer Step #4: e9f45d43ad23: Pulling fs layer Step #4: db56863ee7be: Pulling fs layer Step #4: 84816e0f3769: Pulling fs layer Step #4: a6399624745a: Pulling fs layer Step #4: 0715e4009fac: Pulling fs layer Step #4: 4e5763569d03: Pulling fs layer Step #4: 7f4c947f7af3: Pulling fs layer Step #4: 30d1cf1bf2b4: Pulling fs layer Step #4: 3582fe5817de: Waiting Step #4: a221f9a44ef5: Waiting Step #4: e9f45d43ad23: Waiting Step #4: db56863ee7be: Waiting Step #4: 84816e0f3769: Waiting Step #4: a6399624745a: Waiting Step #4: 0715e4009fac: Waiting Step #4: 4e5763569d03: Waiting Step #4: 7f4c947f7af3: Waiting Step #4: 839d42049c75: Waiting Step #4: 30d1cf1bf2b4: Waiting Step #4: 9b7f47b799be: Waiting Step #4: 885b716fb19d: Waiting Step #4: 1f82e1e2eaac: Waiting Step #4: fcc56198b7b3: Download complete Step #4: 76485c50adab: Verifying Checksum Step #4: 76485c50adab: Download complete Step #4: 6e454ec0415e: Verifying Checksum Step #4: 6e454ec0415e: Download complete Step #4: 76485c50adab: Pull complete Step #4: 885b716fb19d: Verifying Checksum Step #4: 885b716fb19d: Download complete Step #4: 9b7f47b799be: Verifying Checksum Step #4: 9b7f47b799be: Download complete Step #4: 1f82e1e2eaac: Verifying Checksum Step #4: 1f82e1e2eaac: Download complete Step #4: 6e454ec0415e: Pull complete Step #4: fcc56198b7b3: Pull complete Step #4: a221f9a44ef5: Download complete Step #4: 3582fe5817de: Verifying Checksum Step #4: 3582fe5817de: Download complete Step #4: db56863ee7be: Verifying Checksum Step #4: db56863ee7be: Download complete Step #4: 839d42049c75: Verifying Checksum Step #4: 839d42049c75: Download complete Step #4: 84816e0f3769: Verifying Checksum Step #4: 84816e0f3769: Download complete Step #4: a6399624745a: Verifying Checksum Step #4: a6399624745a: Download complete Step #4: 0715e4009fac: Verifying Checksum Step #4: 0715e4009fac: Download complete Step #4: 4e5763569d03: Verifying Checksum Step #4: 4e5763569d03: Download complete Step #4: e9f45d43ad23: Verifying Checksum Step #4: e9f45d43ad23: Download complete Step #4: 7f4c947f7af3: Verifying Checksum Step #4: 7f4c947f7af3: Download complete Step #4: 30d1cf1bf2b4: Verifying Checksum Step #4: 30d1cf1bf2b4: Download complete Step #4: 839d42049c75: Pull complete Step #4: 9b7f47b799be: Pull complete Step #4: 885b716fb19d: Pull complete Step #4: 1f82e1e2eaac: Pull complete Step #4: 3582fe5817de: Pull complete Step #4: a221f9a44ef5: Pull complete Step #4: e9f45d43ad23: Pull complete Step #4: db56863ee7be: Pull complete Step #4: 84816e0f3769: Pull complete Step #4: a6399624745a: Pull complete Step #4: 0715e4009fac: Pull complete Step #4: 4e5763569d03: Pull complete Step #4: 7f4c947f7af3: Pull complete Step #4: 30d1cf1bf2b4: Pull complete Step #4: Digest: sha256:cb894d78b81942499e77d79f91f562ce74c084f3ca1001f2c72a30e5404d1f69 Step #4: Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-runner:latest Step #4: gcr.io/oss-fuzz-base/base-runner:latest Finished Step #4 Starting Step #5 Step #5: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Step #5: Running fuzz_obconversion_smiles Step #5: Running fuzz_obconversion_sdf Step #5: [2024-11-20 06:17:57,152 INFO] Finding shared libraries for targets (if any). Step #5: [2024-11-20 06:17:57,162 INFO] Finished finding shared libraries for targets. Step #5: [2024-11-20 06:21:29,196 INFO] Finding shared libraries for targets (if any). Step #5: [2024-11-20 06:21:29,206 INFO] Finished finding shared libraries for targets. Step #5: [2024-11-20 06:21:29,569 INFO] Finding shared libraries for targets (if any). Step #5: [2024-11-20 06:21:29,584 INFO] Finished finding shared libraries for targets. Step #5: [2024-11-20 06:21:30,128 DEBUG] Finished generating per-file code coverage summary. Step #5: [2024-11-20 06:21:30,128 DEBUG] Generating file view html index file as: "/workspace/out/libfuzzer-coverage-x86_64/report/linux/file_view_index.html". Step #5: [2024-11-20 06:21:30,147 DEBUG] Finished generating file view html index file. Step #5: [2024-11-20 06:21:30,147 DEBUG] Calculating per-directory coverage summary. Step #5: [2024-11-20 06:21:30,152 DEBUG] Finished calculating per-directory coverage summary. Step #5: [2024-11-20 06:21:30,152 DEBUG] Writing per-directory coverage html reports. Step #5: [2024-11-20 06:21:30,307 DEBUG] Finished writing per-directory coverage html reports. Step #5: [2024-11-20 06:21:30,307 DEBUG] Generating directory view html index file as: "/workspace/out/libfuzzer-coverage-x86_64/report/linux/directory_view_index.html". Step #5: [2024-11-20 06:21:30,307 DEBUG] Finished generating directory view html index file. Step #5: [2024-11-20 06:21:30,307 INFO] Index file for html report is generated as: "file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/index.html". Step #5: [2024-11-20 06:21:30,682 DEBUG] Finished generating per-file code coverage summary. Step #5: [2024-11-20 06:21:30,682 DEBUG] Generating file view html index file as: "/workspace/out/libfuzzer-coverage-x86_64/report_target/fuzz_obconversion_smiles/linux/file_view_index.html". Step #5: [2024-11-20 06:21:30,702 DEBUG] Finished generating file view html index file. Step #5: [2024-11-20 06:21:30,702 DEBUG] Calculating per-directory coverage summary. Step #5: [2024-11-20 06:21:30,707 DEBUG] Finished calculating per-directory coverage summary. Step #5: [2024-11-20 06:21:30,707 DEBUG] Writing per-directory coverage html reports. Step #5: [2024-11-20 06:21:30,865 DEBUG] Finished writing per-directory coverage html reports. Step #5: [2024-11-20 06:21:30,865 DEBUG] Generating directory view html index file as: "/workspace/out/libfuzzer-coverage-x86_64/report_target/fuzz_obconversion_smiles/linux/directory_view_index.html". Step #5: [2024-11-20 06:21:30,865 DEBUG] Finished generating directory view html index file. Step #5: [2024-11-20 06:21:30,865 INFO] Index file for html report is generated as: "file:///workspace/out/libfuzzer-coverage-x86_64/report_target/fuzz_obconversion_smiles/linux/index.html". Step #5: [2024-11-20 06:21:31,241 DEBUG] Finished generating per-file code coverage summary. Step #5: [2024-11-20 06:21:31,242 DEBUG] Generating file view html index file as: "/workspace/out/libfuzzer-coverage-x86_64/report_target/fuzz_obconversion_sdf/linux/file_view_index.html". Step #5: [2024-11-20 06:21:31,261 DEBUG] Finished generating file view html index file. Step #5: [2024-11-20 06:21:31,261 DEBUG] Calculating per-directory coverage summary. Step #5: [2024-11-20 06:21:31,265 DEBUG] Finished calculating per-directory coverage summary. Step #5: [2024-11-20 06:21:31,265 DEBUG] Writing per-directory coverage html reports. Step #5: [2024-11-20 06:21:31,421 DEBUG] Finished writing per-directory coverage html reports. Step #5: [2024-11-20 06:21:31,421 DEBUG] Generating directory view html index file as: "/workspace/out/libfuzzer-coverage-x86_64/report_target/fuzz_obconversion_sdf/linux/directory_view_index.html". Step #5: [2024-11-20 06:21:31,421 DEBUG] Finished generating directory view html index file. Step #5: [2024-11-20 06:21:31,421 INFO] Index file for html report is generated as: "file:///workspace/out/libfuzzer-coverage-x86_64/report_target/fuzz_obconversion_sdf/linux/index.html". Finished Step #5 Starting Step #6 Step #6: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #6: CommandException: 1 files/objects could not be removed. Finished Step #6 Starting Step #7 Step #7: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #7: Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/style.css [Content-Type=text/css]... Step #7: Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/directory_view_index.html [Content-Type=text/html]... Step #7: / [0/280 files][ 0.0 B/ 31.3 MiB] 0% Done / [0/280 files][ 0.0 B/ 31.3 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/summary.json [Content-Type=application/json]... Step #7: / [0/280 files][ 0.0 B/ 31.3 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/file_view_index.html [Content-Type=text/html]... Step #7: / [0/280 files][ 0.0 B/ 31.3 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/report.html [Content-Type=text/html]... Step #7: / [0/280 files][ 2.9 KiB/ 31.3 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/index.html [Content-Type=text/html]... Step #7: / [0/280 files][ 2.9 KiB/ 31.3 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/report.html [Content-Type=text/html]... Step #7: / [0/280 files][ 2.9 KiB/ 31.3 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/report.html [Content-Type=text/html]... Step #7: / [0/280 files][ 3.1 KiB/ 31.3 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/build/include/openbabel/babelconfig.h.html [Content-Type=text/html]... Step #7: / [0/280 files][ 3.1 KiB/ 31.3 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/bond.cpp.html [Content-Type=text/html]... Step #7: / [0/280 files][232.8 KiB/ 31.3 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/obfunctions.cpp.html [Content-Type=text/html]... Step #7: / [0/280 files][237.3 KiB/ 31.3 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/mol.cpp.html [Content-Type=text/html]... Step #7: / [0/280 files][237.3 KiB/ 31.3 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/isomorphism.cpp.html [Content-Type=text/html]... Step #7: / [0/280 files][237.3 KiB/ 31.3 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/residue.cpp.html [Content-Type=text/html]... Step #7: / [0/280 files][241.6 KiB/ 31.3 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/obutil.cpp.html [Content-Type=text/html]... Step #7: / [0/280 files][428.5 KiB/ 31.3 MiB] 1% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/atom.cpp.html [Content-Type=text/html]... Step #7: / [0/280 files][428.5 KiB/ 31.3 MiB] 1% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/obmolecformat.cpp.html [Content-Type=text/html]... Step #7: / [0/280 files][428.5 KiB/ 31.3 MiB] 1% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/generic.cpp.html [Content-Type=text/html]... Step #7: / [0/280 files][659.0 KiB/ 31.3 MiB] 2% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/base.cpp.html [Content-Type=text/html]... Step #7: / [0/280 files][659.0 KiB/ 31.3 MiB] 2% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/obiter.cpp.html [Content-Type=text/html]... Step #7: / [0/280 files][659.0 KiB/ 31.3 MiB] 2% Done / [1/280 files][ 1.2 MiB/ 31.3 MiB] 3% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/graphsym.cpp.html [Content-Type=text/html]... Step #7: / [1/280 files][ 1.6 MiB/ 31.3 MiB] 5% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/rotor.cpp.html [Content-Type=text/html]... Step #7: / [1/280 files][ 1.7 MiB/ 31.3 MiB] 5% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/canon.cpp.html [Content-Type=text/html]... Step #7: / [2/280 files][ 1.7 MiB/ 31.3 MiB] 5% Done / [2/280 files][ 1.7 MiB/ 31.3 MiB] 5% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/transform.cpp.html [Content-Type=text/html]... Step #7: / [2/280 files][ 1.7 MiB/ 31.3 MiB] 5% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/tokenst.cpp.html [Content-Type=text/html]... Step #7: / [2/280 files][ 1.7 MiB/ 31.3 MiB] 5% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/descriptor.cpp.html [Content-Type=text/html]... Step #7: Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/mcdlutil.cpp.html [Content-Type=text/html]... Step #7: / [2/280 files][ 2.0 MiB/ 31.3 MiB] 6% Done / [2/280 files][ 2.0 MiB/ 31.3 MiB] 6% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/format.cpp.html [Content-Type=text/html]... Step #7: / [2/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/rand.h.html [Content-Type=text/html]... Step #7: / [2/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/elements.cpp.html [Content-Type=text/html]... Step #7: / [3/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/chains.cpp.html [Content-Type=text/html]... Step #7: / [3/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done / [3/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done / [4/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/bondtyper.cpp.html [Content-Type=text/html]... Step #7: / [4/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/molchrg.cpp.html [Content-Type=text/html]... Step #7: Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/griddata.cpp.html [Content-Type=text/html]... Step #7: / [4/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done / [5/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done / [5/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/builder.cpp.html [Content-Type=text/html]... Step #7: / [5/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/chargemodel.cpp.html [Content-Type=text/html]... Step #7: / [5/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/plugin.cpp.html [Content-Type=text/html]... Step #7: / [5/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/bitvec.cpp.html [Content-Type=text/html]... Step #7: / [5/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/forcefield.cpp.html [Content-Type=text/html]... Step #7: / [5/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/alias.cpp.html [Content-Type=text/html]... Step #7: / [5/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/parsmart.cpp.html [Content-Type=text/html]... Step #7: / [5/280 files][ 2.7 MiB/ 31.3 MiB] 8% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report/linux/src/openbabel/src/fingerprint.cpp.html [Content-Type=text/html]... 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Finished Step #7 Starting Step #8 Step #8: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #8: CommandException: 1 files/objects could not be removed. Finished Step #8 Starting Step #9 Step #9: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #9: Copying file:///workspace/out/libfuzzer-coverage-x86_64/report_target/fuzz_obconversion_smiles/style.css [Content-Type=text/css]... Step #9: / [0/560 files][ 0.0 B/ 62.9 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report_target/fuzz_obconversion_smiles/linux/directory_view_index.html [Content-Type=text/html]... Step #9: / [0/560 files][ 0.0 B/ 62.9 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/report_target/fuzz_obconversion_smiles/linux/file_view_index.html [Content-Type=text/html]... 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Step #9: - [482/560 files][ 61.8 MiB/ 62.9 MiB] 98% Done - [483/560 files][ 62.0 MiB/ 62.9 MiB] 98% Done - [483/560 files][ 62.0 MiB/ 62.9 MiB] 98% Done - [483/560 files][ 62.0 MiB/ 62.9 MiB] 98% Done - [484/560 files][ 62.1 MiB/ 62.9 MiB] 98% Done - [485/560 files][ 62.1 MiB/ 62.9 MiB] 98% Done - [486/560 files][ 62.2 MiB/ 62.9 MiB] 98% Done - [487/560 files][ 62.3 MiB/ 62.9 MiB] 98% Done - [488/560 files][ 62.4 MiB/ 62.9 MiB] 99% Done - [489/560 files][ 62.6 MiB/ 62.9 MiB] 99% Done - [490/560 files][ 62.6 MiB/ 62.9 MiB] 99% Done - [491/560 files][ 62.6 MiB/ 62.9 MiB] 99% Done - [492/560 files][ 62.6 MiB/ 62.9 MiB] 99% Done - [493/560 files][ 62.6 MiB/ 62.9 MiB] 99% Done - [494/560 files][ 62.6 MiB/ 62.9 MiB] 99% Done - [495/560 files][ 62.6 MiB/ 62.9 MiB] 99% Done - [496/560 files][ 62.6 MiB/ 62.9 MiB] 99% Done - [497/560 files][ 62.6 MiB/ 62.9 MiB] 99% Done - [498/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [499/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [500/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [501/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [502/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [503/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [504/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [505/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [506/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [507/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [508/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [509/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [510/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [511/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [512/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [513/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [514/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [515/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [516/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [517/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [518/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [519/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [520/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [521/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [522/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [523/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [524/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [525/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [526/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [527/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [528/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [529/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [530/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [531/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [532/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [533/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [534/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [535/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [536/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [537/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [538/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [539/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [540/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [541/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [542/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [543/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [544/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [545/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [546/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [547/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [548/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [549/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [550/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [551/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [552/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [553/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [554/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [555/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [556/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [557/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [558/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [559/560 files][ 62.9 MiB/ 62.9 MiB] 99% Done - [560/560 files][ 62.9 MiB/ 62.9 MiB] 100% Done Step #9: Operation completed over 560 objects/62.9 MiB. Finished Step #9 Starting Step #10 Step #10: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #10: CommandException: 1 files/objects could not be removed. Finished Step #10 Starting Step #11 Step #11: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #11: Copying file:///workspace/out/libfuzzer-coverage-x86_64/fuzzer_stats/fuzz_obconversion_sdf.json [Content-Type=application/json]... Step #11: / [0/3 files][ 0.0 B/218.8 KiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/fuzzer_stats/coverage_targets.txt [Content-Type=text/plain]... Step #11: / [0/3 files][ 0.0 B/218.8 KiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/fuzzer_stats/fuzz_obconversion_smiles.json [Content-Type=application/json]... Step #11: / [0/3 files][ 0.0 B/218.8 KiB] 0% Done / [1/3 files][218.8 KiB/218.8 KiB] 99% Done / [2/3 files][218.8 KiB/218.8 KiB] 99% Done / [3/3 files][218.8 KiB/218.8 KiB] 100% Done Step #11: Operation completed over 3 objects/218.8 KiB. Finished Step #11 Starting Step #12 Step #12: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #12: CommandException: 1 files/objects could not be removed. Finished Step #12 Starting Step #13 Step #13: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #13: Copying file:///workspace/out/libfuzzer-coverage-x86_64/textcov_reports/fuzz_obconversion_smiles.covreport [Content-Type=application/octet-stream]... Step #13: / [0/2 files][ 0.0 B/ 1011 KiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/textcov_reports/fuzz_obconversion_sdf.covreport [Content-Type=application/octet-stream]... Step #13: / [0/2 files][456.1 KiB/ 1011 KiB] 45% Done / [1/2 files][ 1011 KiB/ 1011 KiB] 99% Done / [2/2 files][ 1011 KiB/ 1011 KiB] 100% Done Step #13: Operation completed over 2 objects/1011.1 KiB. Finished Step #13 Starting Step #14 Step #14: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #14: CommandException: 1 files/objects could not be removed. Finished Step #14 Starting Step #15 Step #15: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #15: Copying file:///workspace/out/libfuzzer-coverage-x86_64/logs/fuzz_obconversion_sdf.log [Content-Type=application/octet-stream]... Step #15: / [0/2 files][ 0.0 B/125.4 MiB] 0% Done Copying file:///workspace/out/libfuzzer-coverage-x86_64/logs/fuzz_obconversion_smiles.log [Content-Type=application/octet-stream]... Step #15: / [0/2 files][ 0.0 B/125.4 MiB] 0% Done - - [1/2 files][125.4 MiB/125.4 MiB] 99% Done - [2/2 files][125.4 MiB/125.4 MiB] 100% Done Step #15: Operation completed over 2 objects/125.4 MiB. Finished Step #15 Starting Step #16 Step #16: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #16: Copying file:///workspace/srcmap.json [Content-Type=application/json]... Step #16: / [0 files][ 0.0 B/ 160.0 B] / [1 files][ 160.0 B/ 160.0 B] Step #16: Operation completed over 1 objects/160.0 B. Finished Step #16 Starting Step #17 Step #17: Already have image (with digest): gcr.io/cloud-builders/curl Step #17: % Total % Received % Xferd Average Speed Time Time Time Current Step #17: Dload Upload Total Spent Left Speed Step #17: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 315 0 0 100 315 0 1640 --:--:-- --:--:-- --:--:-- 1649 Finished Step #17 PUSH DONE