starting build "d0698094-a949-4392-96fd-756d8c782ab6" FETCHSOURCE BUILD Starting Step #0 Step #0: Already have image (with digest): gcr.io/cloud-builders/git Step #0: Cloning into 'oss-fuzz'... Finished Step #0 Starting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d" Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Already have image (with digest): gcr.io/cloud-builders/docker Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Sending build context to Docker daemon 7.168kB Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Step 1/5 : FROM gcr.io/oss-fuzz-base/base-builder Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": latest: Pulling from oss-fuzz-base/base-builder Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": b549f31133a9: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": b880dc731500: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 82041dc1a4fa: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 04b76f7cd96d: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fa579f83bc7d: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fe5bdcfddebe: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 71c80bdeaec9: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 0754d8a56012: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 723e414dadd7: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 53113f4ad526: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fc6bda1704aa: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 349fc320bd50: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": c24213376e70: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": a52c4b712ad4: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": e54e961114cf: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": eec8cabe327b: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 561e2e49f924: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 0d535df7fe34: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": a2cff97ef91a: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": cc9147cf8d09: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": a6c1b0cb7a93: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 2cb6b8fa74c4: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 2637bf5d1a33: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 693d62192859: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 28a3979027aa: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": dbcaf5522a5e: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": d9f90f19b915: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": afa9e32e6d33: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 42d2ef0af396: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 349fc320bd50: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 21ef0f851d8c: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fd2a862ad38c: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 0754d8a56012: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": c24213376e70: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 3cc37bc8d6fe: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": eec8cabe327b: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 7677dd7601c9: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 723e414dadd7: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 292e28b8283e: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 12423f642b7b: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 53113f4ad526: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fc6bda1704aa: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 561e2e49f924: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": a52c4b712ad4: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": e54e961114cf: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": dc372bc84b0d: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 0d535df7fe34: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fd2a862ad38c: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": c4d0e60f59d1: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 13cd037adbd1: Pulling fs layer Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": a2cff97ef91a: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": dbcaf5522a5e: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 3cc37bc8d6fe: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": cc9147cf8d09: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 7677dd7601c9: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 2cb6b8fa74c4: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": a6c1b0cb7a93: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 12423f642b7b: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 2637bf5d1a33: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 292e28b8283e: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": dc372bc84b0d: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": c4d0e60f59d1: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 13cd037adbd1: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 21ef0f851d8c: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 28a3979027aa: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 42d2ef0af396: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": afa9e32e6d33: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 693d62192859: Waiting Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 82041dc1a4fa: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 82041dc1a4fa: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fa579f83bc7d: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 71c80bdeaec9: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 71c80bdeaec9: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 0754d8a56012: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": b549f31133a9: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": b549f31133a9: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 04b76f7cd96d: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 04b76f7cd96d: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fc6bda1704aa: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fc6bda1704aa: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 349fc320bd50: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 349fc320bd50: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": c24213376e70: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": c24213376e70: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": a52c4b712ad4: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": eec8cabe327b: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": e54e961114cf: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": e54e961114cf: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": b880dc731500: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": b880dc731500: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 0d535df7fe34: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 0d535df7fe34: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 53113f4ad526: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 53113f4ad526: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 561e2e49f924: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 561e2e49f924: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": a2cff97ef91a: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": a2cff97ef91a: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": cc9147cf8d09: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": cc9147cf8d09: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": a6c1b0cb7a93: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": a6c1b0cb7a93: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 2cb6b8fa74c4: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 693d62192859: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 693d62192859: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 28a3979027aa: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 28a3979027aa: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 2637bf5d1a33: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 2637bf5d1a33: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": dbcaf5522a5e: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": d9f90f19b915: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": afa9e32e6d33: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": afa9e32e6d33: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 42d2ef0af396: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 42d2ef0af396: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 21ef0f851d8c: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 21ef0f851d8c: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fd2a862ad38c: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fd2a862ad38c: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 3cc37bc8d6fe: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 3cc37bc8d6fe: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": b549f31133a9: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 292e28b8283e: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 7677dd7601c9: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 7677dd7601c9: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 12423f642b7b: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 12423f642b7b: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": dc372bc84b0d: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 723e414dadd7: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 723e414dadd7: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 13cd037adbd1: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 13cd037adbd1: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": c4d0e60f59d1: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": c4d0e60f59d1: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fe5bdcfddebe: Verifying Checksum Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fe5bdcfddebe: Download complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": b880dc731500: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 82041dc1a4fa: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 04b76f7cd96d: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fa579f83bc7d: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fe5bdcfddebe: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 71c80bdeaec9: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 0754d8a56012: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 723e414dadd7: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 53113f4ad526: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fc6bda1704aa: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 349fc320bd50: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": c24213376e70: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": a52c4b712ad4: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": e54e961114cf: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": eec8cabe327b: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 561e2e49f924: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 0d535df7fe34: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": a2cff97ef91a: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": cc9147cf8d09: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": a6c1b0cb7a93: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 2cb6b8fa74c4: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 2637bf5d1a33: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 693d62192859: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 28a3979027aa: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": dbcaf5522a5e: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": d9f90f19b915: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": afa9e32e6d33: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 42d2ef0af396: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 21ef0f851d8c: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": fd2a862ad38c: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 3cc37bc8d6fe: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 7677dd7601c9: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 292e28b8283e: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 12423f642b7b: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": dc372bc84b0d: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": c4d0e60f59d1: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 13cd037adbd1: Pull complete Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Digest: sha256:17577aa2fe7890132ccb9b77d973994084757f6609989df1da9380a5afcb2875 Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-builder:latest Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": ---> b1f32f5878be Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Step 2/5 : RUN apt-get update && apt install -y cmake Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": ---> Running in 4f01b2e65539 Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Get:1 http://security.ubuntu.com/ubuntu focal-security InRelease [128 kB] Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Hit:2 http://archive.ubuntu.com/ubuntu focal InRelease Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Get:3 http://archive.ubuntu.com/ubuntu focal-updates InRelease [128 kB] Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Get:4 http://archive.ubuntu.com/ubuntu focal-backports InRelease [128 kB] Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Fetched 383 kB in 1s (330 kB/s) Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Reading package lists... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d":  Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Reading package lists... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Building dependency tree... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Reading state information... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": The following packages were automatically installed and are no longer required: Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": autotools-dev libsigsegv2 m4 Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Use 'apt autoremove' to remove them. Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": The following additional packages will be installed: Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Suggested packages: Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": cmake-doc ninja-build lrzip Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": The following NEW packages will be installed: Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": cmake cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Need to get 15.0 MB of archives. Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": After this operation, 65.0 MB of additional disk space will be used. Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libicu66 amd64 66.1-2ubuntu2.1 [8515 kB] Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2 amd64 2.9.10+dfsg-5ubuntu0.20.04.10 [640 kB] Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1 amd64 1.34.2-1ubuntu1.5 [80.9 kB] Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake-data all 3.16.3-1ubuntu1.20.04.1 [1613 kB] Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libarchive13 amd64 3.4.0-2ubuntu1.5 [327 kB] Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake amd64 3.16.3-1ubuntu1.20.04.1 [3668 kB] Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": debconf: delaying package configuration, since apt-utils is not installed Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Fetched 15.0 MB in 1s (29.8 MB/s) Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Selecting previously unselected package libicu66:amd64. Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17483 files and directories currently installed.) Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Preparing to unpack .../0-libicu66_66.1-2ubuntu2.1_amd64.deb ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Unpacking libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Selecting previously unselected package libxml2:amd64. Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Preparing to unpack .../1-libxml2_2.9.10+dfsg-5ubuntu0.20.04.10_amd64.deb ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Unpacking libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.10) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Selecting previously unselected package libuv1:amd64. Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Preparing to unpack .../2-libuv1_1.34.2-1ubuntu1.5_amd64.deb ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Unpacking libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Selecting previously unselected package cmake-data. Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Preparing to unpack .../3-cmake-data_3.16.3-1ubuntu1.20.04.1_all.deb ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Unpacking cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Selecting previously unselected package libarchive13:amd64. Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Preparing to unpack .../4-libarchive13_3.4.0-2ubuntu1.5_amd64.deb ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Unpacking libarchive13:amd64 (3.4.0-2ubuntu1.5) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Selecting previously unselected package libjsoncpp1:amd64. Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Preparing to unpack .../5-libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Selecting previously unselected package librhash0:amd64. Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Preparing to unpack .../6-librhash0_1.3.9-1_amd64.deb ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Unpacking librhash0:amd64 (1.3.9-1) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Selecting previously unselected package cmake. Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Preparing to unpack .../7-cmake_3.16.3-1ubuntu1.20.04.1_amd64.deb ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Unpacking cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Setting up libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Setting up libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Setting up librhash0:amd64 (1.3.9-1) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Setting up cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Setting up libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.10) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Setting up libarchive13:amd64 (3.4.0-2ubuntu1.5) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Setting up cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Processing triggers for libc-bin (2.31-0ubuntu9.18) ... Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Removing intermediate container 4f01b2e65539 Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": ---> 5fce86d0dbdb Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Step 3/5 : RUN git clone --depth 1 https://github.com/openbabel/openbabel.git Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": ---> Running in 8a48586d1f0c Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Cloning into 'openbabel'... 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Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Removing intermediate container 8a48586d1f0c Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": ---> e413ab6ef6b5 Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Step 4/5 : COPY *.sh $SRC/ Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": ---> 9d3534373cdb Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Step 5/5 : WORKDIR $SRC/openbabel Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": ---> Running in 420705e3e814 Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Removing intermediate container 420705e3e814 Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": ---> f34fb1370605 Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Successfully built f34fb1370605 Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Successfully tagged gcr.io/oss-fuzz/openbabel:latest Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d": Successfully tagged us-central1-docker.pkg.dev/oss-fuzz/unsafe/openbabel:latest Finished Step #1 - "build-715df20c-c295-4e14-88dc-b4996c26565d" Starting Step #2 - "srcmap" Step #2 - "srcmap": Already have image: gcr.io/oss-fuzz/openbabel Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + SRCMAP=/tmp/filetXkBkN Step #2 - "srcmap": + echo '{}' Step #2 - "srcmap": + PATHS_TO_SCAN=/src Step #2 - "srcmap": + [[ c++ == \g\o ]] Step #2 - "srcmap": ++ find /src -name .git -type d Step #2 - "srcmap": + for DOT_GIT_DIR in $(find $PATHS_TO_SCAN -name ".git" -type d) Step #2 - "srcmap": ++ dirname /src/openbabel/.git Step #2 - "srcmap": + GIT_DIR=/src/openbabel Step #2 - "srcmap": + cd /src/openbabel Step #2 - "srcmap": ++ git config --get remote.origin.url Step #2 - "srcmap": + GIT_URL=https://github.com/openbabel/openbabel.git Step #2 - "srcmap": ++ git rev-parse HEAD Step #2 - "srcmap": + GIT_REV=889c350feb179b43aa43985799910149d4eaa2bc Step #2 - "srcmap": + jq_inplace /tmp/filetXkBkN '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "889c350feb179b43aa43985799910149d4eaa2bc" }' Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + F=/tmp/filexX5fDc Step #2 - "srcmap": + cat /tmp/filetXkBkN Step #2 - "srcmap": + jq '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "889c350feb179b43aa43985799910149d4eaa2bc" }' Step #2 - "srcmap": + mv /tmp/filexX5fDc /tmp/filetXkBkN Step #2 - "srcmap": ++ find /src -name .svn -type d Step #2 - "srcmap": ++ find /src -name .hg -type d Step #2 - "srcmap": + '[' '' '!=' '' ']' Step #2 - "srcmap": + cat /tmp/filetXkBkN Step #2 - "srcmap": + rm /tmp/filetXkBkN Step #2 - "srcmap": { Step #2 - "srcmap": "/src/openbabel": { Step #2 - "srcmap": "type": "git", Step #2 - "srcmap": "url": "https://github.com/openbabel/openbabel.git", Step #2 - "srcmap": "rev": "889c350feb179b43aa43985799910149d4eaa2bc" Step #2 - "srcmap": } Step #2 - "srcmap": } Finished Step #2 - "srcmap" Starting Step #3 - "compile-afl-address-x86_64" Step #3 - "compile-afl-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": vm.mmap_rnd_bits = 28 Step #3 - "compile-afl-address-x86_64": Copying precompiled AFL++ Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": AFL++ target compilation setup: Step #3 - "compile-afl-address-x86_64": AFL_IGNORE_UNKNOWN_ENVS=1 Step #3 - "compile-afl-address-x86_64": AFL_QUIET=1 Step #3 - "compile-afl-address-x86_64": AFL_IGNORE_PROBLEMS=1 Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": done. Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": CC=/src/aflplusplus/afl-clang-fast Step #3 - "compile-afl-address-x86_64": CXX=/src/aflplusplus/afl-clang-fast++ Step #3 - "compile-afl-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope Step #3 - "compile-afl-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -stdlib=libc++ Step #3 - "compile-afl-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #3 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #3 - "compile-afl-address-x86_64": + export 'CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -stdlib=libc++ -std=c++17' Step #3 - "compile-afl-address-x86_64": + CXXFLAGS='-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -stdlib=libc++ -std=c++17' Step #3 - "compile-afl-address-x86_64": + sed -i 's/CMAKE_CXX_STANDARD 11/CMAKE_CXX_STANDARD 17/g' CMakeLists.txt Step #3 - "compile-afl-address-x86_64": + sed -i 's/std::random/\/\/std::random/g' test/addhtest.cpp test/aliastest.cpp test/aligntest.cpp test/aromatest.cpp test/atom.cpp test/automorphismtest.cpp test/bond.cpp test/buildertest.cpp test/canonconsistenttest.cpp test/canonfragmenttest.cpp test/canonstabletest.cpp test/cansmi.cpp test/carspacegrouptest.cpp test/charge_gasteiger.cpp test/charge_mmff94.cpp test/cifspacegrouptest.cpp test/cistranstest.cpp test/cmlreadfile.cpp test/conversion.cpp test/conversiontest.cpp test/datatest.cpp test/ffgaff.cpp test/ffghemical.cpp test/ffmmff94.cpp test/ffuff.cpp test/formalcharge.cpp test/format.cpp test/formula.cpp test/graphsymtest.cpp test/gziptest.cpp test/implicitHtest.cpp test/inchiwrite.cpp test/internalcoord.cpp test/invalidsmarts.cpp test/invalidsmiles.cpp test/isomorphismtest.cpp test/iterators.cpp test/logp_psa.cpp test/lssrtest.cpp test/maereadertest.cpp test/math.cpp test/mmff94validate.cpp test/mol.cpp test/multicmltest.cpp test/obmolbenchmark.cpp test/obtest.cpp test/pdbreadfile.cpp test/periodictest.cpp test/phmodel.cpp test/regressionstest.cpp test/residue.cpp test/ringtest.cpp test/rotortest.cpp test/roundtrip.cpp test/shuffletest.cpp test/smartsparse.cpp test/smartstest.cpp test/smilesmatch.cpp test/smilestest.cpp test/smileytest.cpp test/spectrophoretest.cpp test/squareplanartest.cpp test/stereoperceptiontest.cpp test/stereotest.cpp test/strip.cpp test/tautomertest.cpp test/tetrahedraltest.cpp test/tetranonplanartest.cpp test/tetraplanartest.cpp test/uniqueidtest.cpp test/unitcell.cpp test/zipstream.cpp Step #3 - "compile-afl-address-x86_64": + mkdir build Step #3 - "compile-afl-address-x86_64": + cd build Step #3 - "compile-afl-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #3 - "compile-afl-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #3 - "compile-afl-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #3 - "compile-afl-address-x86_64": CMake. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #3 - "compile-afl-address-x86_64": CMake that the project does not need compatibility with older versions. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- The C compiler identification is Clang 22.0.0 Step #3 - "compile-afl-address-x86_64": -- The CXX compiler identification is Clang 22.0.0 Step #3 - "compile-afl-address-x86_64": -- Detecting C compiler ABI info Step #3 - "compile-afl-address-x86_64": -- Detecting C compiler ABI info - done Step #3 - "compile-afl-address-x86_64": -- Check for working C compiler: /src/aflplusplus/afl-clang-fast - skipped Step #3 - "compile-afl-address-x86_64": -- Detecting C compile features Step #3 - "compile-afl-address-x86_64": -- Detecting C compile features - done Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compiler ABI info Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compiler ABI info - done Step #3 - "compile-afl-address-x86_64": -- Check for working CXX compiler: /src/aflplusplus/afl-clang-fast++ - skipped Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compile features Step #3 - "compile-afl-address-x86_64": -- Detecting CXX compile features - done Step #3 - "compile-afl-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #3 - "compile-afl-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #3 - "compile-afl-address-x86_64": of CMake. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #3 - "compile-afl-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #3 - "compile-afl-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #3 - "compile-afl-address-x86_64": behavior and not rely on setting a policy to OLD. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Using included inchi library. Step #3 - "compile-afl-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #3 - "compile-afl-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #3 - "compile-afl-address-x86_64": libxml2 not found - disabling CML support! Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #3 - "compile-afl-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #3 - "compile-afl-address-x86_64": -- Looking for conio.h Step #3 - "compile-afl-address-x86_64": -- Looking for conio.h - not found Step #3 - "compile-afl-address-x86_64": -- Looking for sys/time.h Step #3 - "compile-afl-address-x86_64": -- Looking for sys/time.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for time.h Step #3 - "compile-afl-address-x86_64": -- Looking for time.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for strings.h Step #3 - "compile-afl-address-x86_64": -- Looking for strings.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for regex.h Step #3 - "compile-afl-address-x86_64": -- Looking for regex.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for C++ include sstream Step #3 - "compile-afl-address-x86_64": -- Looking for C++ include sstream - found Step #3 - "compile-afl-address-x86_64": -- Looking for rint Step #3 - "compile-afl-address-x86_64": -- Looking for rint - found Step #3 - "compile-afl-address-x86_64": -- Looking for snprintf Step #3 - "compile-afl-address-x86_64": -- Looking for snprintf - found Step #3 - "compile-afl-address-x86_64": -- Looking for sranddev Step #3 - "compile-afl-address-x86_64": -- Looking for sranddev - not found Step #3 - "compile-afl-address-x86_64": -- Looking for strcasecmp Step #3 - "compile-afl-address-x86_64": -- Looking for strcasecmp - found Step #3 - "compile-afl-address-x86_64": -- Looking for strncasecmp Step #3 - "compile-afl-address-x86_64": -- Looking for strncasecmp - found Step #3 - "compile-afl-address-x86_64": -- Looking for xdrstdio_create Step #3 - "compile-afl-address-x86_64": -- Looking for xdrstdio_create - found Step #3 - "compile-afl-address-x86_64": -- Looking for dlopen in dl Step #3 - "compile-afl-address-x86_64": -- Looking for dlopen in dl - found Step #3 - "compile-afl-address-x86_64": -- Looking for sys/types.h Step #3 - "compile-afl-address-x86_64": -- Looking for sys/types.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for stdint.h Step #3 - "compile-afl-address-x86_64": -- Looking for stdint.h - found Step #3 - "compile-afl-address-x86_64": -- Looking for stddef.h Step #3 - "compile-afl-address-x86_64": -- Looking for stddef.h - found Step #3 - "compile-afl-address-x86_64": -- Check size of clock_t Step #3 - "compile-afl-address-x86_64": -- Check size of clock_t - done Step #3 - "compile-afl-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #3 - "compile-afl-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #3 - "compile-afl-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #3 - "compile-afl-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #3 - "compile-afl-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #3 - "compile-afl-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #3 - "compile-afl-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #3 - "compile-afl-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #3 - "compile-afl-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #3 - "compile-afl-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #3 - "compile-afl-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #3 - "compile-afl-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #3 - "compile-afl-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #3 - "compile-afl-address-x86_64": -- Found Threads: TRUE Step #3 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #3 - "compile-afl-address-x86_64": -- Looking for getopt Step #3 - "compile-afl-address-x86_64": -- Looking for getopt - found Step #3 - "compile-afl-address-x86_64": -- GUI will not be built Step #3 - "compile-afl-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #3 - "compile-afl-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #3 - "compile-afl-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #3 - "compile-afl-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": Call Stack (most recent call first): Step #3 - "compile-afl-address-x86_64": test/CMakeLists.txt:233 (include) Step #3 - "compile-afl-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.11.13") Step #3 - "compile-afl-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #3 - "compile-afl-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #3 - "compile-afl-address-x86_64": CMake. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #3 - "compile-afl-address-x86_64": CMake that the project does not need compatibility with older versions. Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": -- Configuring done (7.8s) Step #3 - "compile-afl-address-x86_64": -- Generating done (0.1s) Step #3 - "compile-afl-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #3 - "compile-afl-address-x86_64": ++ nproc Step #3 - "compile-afl-address-x86_64": + make -j 32 Step #3 - "compile-afl-address-x86_64": [ 0%] Generating atomtyp.h Step #3 - "compile-afl-address-x86_64": [ 0%] Generating bondtyp.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating phmodeldata.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating resdata.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating torlib.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating types.h Step #3 - "compile-afl-address-x86_64": [ 1%] Generating atomizationenergies.h Step #3 - "compile-afl-address-x86_64": [ 2%] Generating spacegroups.h Step #3 - "compile-afl-address-x86_64": [ 2%] Generating ringtyp.h Step #3 - "compile-afl-address-x86_64": [ 2%] Built target data_headers Step #3 - "compile-afl-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #3 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #3 - "compile-afl-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #3 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #3 - 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"compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #3 - "compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #3 - "compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #3 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #3 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #3 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #3 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #3 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #3 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 82 | _ival=nullptr; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #3 - "compile-afl-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=In file included from 1/src/openbabel/src/forcefield.cpp:34: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _i; vael; Step #3 - "compile-afl-address-x86_64": |  ^lse (*bondL Step #3 - "compile-afl-address-x86_64": abel)[j]=0; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1523 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1539 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 518 | theta = OBForceField::Vecto/src/openbabel/src/atom.cpp:826:62rT: orwarning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations]sion Step #3 - "compile-afl-address-x86_64": Derivative(da, db, dc, dd); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5:  826note:  | 'VectorTorsionDerivative' has been explicitly marked deprecated here  Step #3 - "compile-afl-address-x86_64": if ((*i)->IsInRing(GetIdx()) && static_ca st<int>((*i)->P1572 | athSiz e()) == size) Step #3 - "compile-afl-address-x86_64": OB|  ^_DEPRECATED Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64":  /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 65 | |  ^ Step #3 - "compile-afl-address-x86_64": OB_DEPRECATED_MS/src/openbabel/build/include/openbabel/babelconfig.hG("Use S:i37ze() instead") Step #3 - "compile-afl-address-x86_64": |  ^: Step #3 - "compile-afl-address-x86_64": 29/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | : #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->Ge/src/openbabel/src/builder.cpp:310:tRe19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]s Step #3 - "compile-afl-address-x86_64": olution( 310). | size(); Step #3 - "compile-afl-address-x86_64": | if (bond ^2 == Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h: VZero || v1 ==449:5: note: 'GetResolution' has been explicitly marked deprecated here V Step #3 - "compile-afl-address-x86_64": Z 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | ero) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  /src/openbabel/build/include/openbabel/babelconfig.h : 38 :#38d:ef innote: e expanded from macro 'OB_DEPRECATED_MSG'OB Step #3 - "compile-afl-address-x86_64": _ DEPRECAT38E | D_ M S G (#mdsegf)i n[e[ dOBe_pDrEecPREaCtAeTdE(Dm_sMgS)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": G(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEP[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #3 - "compile-afl-address-x86_64": RECATED_MSG("Use vector3::IsApprox() in/src/openbabel/src/forcefield.cpp:s1622t:8e:a d."warning: )'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1622 | Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38:  note:  expanded from macro 'OB_DEPRECATED_MSG'  Step #3 - "compile-afl-address-x86_64": 38 | rl.SetFixAtoms(fi x ed) #;defi Step #3 - "compile-afl-address-x86_64": | ne ^ Step #3 - "compile-afl-address-x86_64":  OB_DEPRECATED_MSG(msg) [[de/src/openbabel/include/openbabel/rotor.h:633:5: note: pr'SetFixAtoms' has been explicitly marked deprecated hereeca Step #3 - "compile-afl-address-x86_64": t 633ed(msg)]] Step #3 - "compile-afl-address-x86_64": |  | ^ Step #3 - "compile-afl-address-x86_64":  /src/openbabel/src/builder.cpp: OB_DEPRECATED_MSG("See SetFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1635 | combinations *= rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1685359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 359 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 361 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEP430 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": R/src/openbabel/include/openbabel/math/vector3.hE:273:CATE5: D_Mnote: S'operator==' has been explicitly marked deprecated hereG( Step #3 - "compile-afl-address-x86_64": "S 273ee GetTor | s i o n VOaBl_uDeEsP(R)E"CA)TE Step #3 - "compile-afl-address-x86_64": D _| MS ^G Step #3 - "compile-afl-address-x86_64": ("Use /src/openbabel/build/include/openbabel/babelconfig.hv:e38c:t38:o r3::note: Iexpanded from macro 'OB_DEPRECATED_MSG'sA Step #3 - "compile-afl-address-x86_64": p prox() i38n | s t e#defiande.")  Step #3 - "compile-afl-address-x86_64": O |  ^ Step #3 - "compile-afl-address-x86_64": B_DEPRE/src/openbabel/build/include/openbabel/babelconfig.h:38CATE:D_M38:S Gnote: (mexpanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": sg) [[depre38c | at ed(m s#dge)fi]n]e Step #3 - "compile-afl-address-x86_64": O B| _ ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 432 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 434 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 450 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 452 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 454 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 469 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: /src/openbabel/include/openbabel/math/vector3.h:'IsNearZero' is deprecated [-Wdeprecated-declarations]273 Step #3 - "compile-afl-address-x86_64": :5: note: 'operator==' has been explicitly marked deprecated here 2420 |  Step #3 - "compile-afl-address-x86_64": if273 | OB_DEPRECATED_MSG("Use vector3: :(IsNIearZero(scale)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | sOBApprox() instea_DEPRECATED Step #3 - "compile-afl-address-x86_64": | d. ^ Step #3 - "compile-afl-address-x86_64": "/src/openbabel/build/include/openbabel/babelconfig.h:37:29:) note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": Step #3 - "compile-afl-address-x86_64": |  ^ 37 Step #3 - "compile-afl-address-x86_64": |  #define OB_DEP/src/openbabel/build/include/openbabel/babelconfig.hRECATED [[d:epreca38ted]]: Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 471 | else if (bond2 == V/src/openbabel/src/forcefield.cpp:Z2539er:o)11: Step #3 - "compile-afl-address-x86_64": | warning: ^ Step #3 - "compile-afl-address-x86_64": 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h :273:5: 2539note: | 'operator==' has been explicitly marked deprecated here  Step #3 - "compile-afl-address-x86_64": if (I sN273 | e a r(OeB__nD2E,P eR_EnC1AT,E D1_.M0SGe(-3")U)s {e Step #3 - "compile-afl-address-x86_64": | ve ^c Step #3 - "compile-afl-address-x86_64": tor3::I/src/openbabel/include/openbabel/obutil.hs:189A:p3p:r ox(note: ) 'IsNear' has been explicitly marked deprecated herein Step #3 - "compile-afl-address-x86_64": s te189a | dO.B"_DE)PRE Step #3 - "compile-afl-address-x86_64": C A| TE ^D Step #3 - "compile-afl-address-x86_64": _MSG(/src/openbabel/build/include/openbabel/babelconfig.h:"38U:s38e: IsAnote: pexpanded from macro 'OB_DEPRECATED_MSG'pr Step #3 - "compile-afl-address-x86_64": o x() inst38ead | "  )  Step #3 - "compile-afl-address-x86_64": # d| efine ^O Step #3 - "compile-afl-address-x86_64": B_DEPRE/src/openbabel/build/include/openbabel/babelconfig.hC:A38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPTED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 473 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": RECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB/src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 494 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 496 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | _ DEP #define ORECATEDB_D_MSG(EP"RUEsCeA TIEDs_AMppSrGo(xmsg) () in[[stead") Step #3 - "compile-afl-address-x86_64": deprecate |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #dd(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": efine OB_DEPRECATED_MSG(msg) [[deprecated(msg)]/src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": 498 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 514 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 516 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 518 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 520 | else if (bond4 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 533 | if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 535 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: /src/openbabel/include/openbabel/math/vector3.hwarning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]:273 Step #3 - "compile-afl-address-x86_64": :5 2838 | :if (IsNear(e_n2, _e_n1, _econv) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note:  'IsNear' has been explicitly marked deprecated herenote: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3039 |  Step #3 - "compile-afl-address-x86_64": if (I 273 | sN OB_DEPRECATED_MSGea("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": r( 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": e_n2, _e_n1, _econv) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DE/src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": PRECA 537 | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": T/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": ED_ 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": M/src/openbabel/build/include/openbabel/babelconfig.hS:G(38:"38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 539 | else if (bond4 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_/src/openbabel/src/mol.cpp:2788:29: warning: DEPR'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2788 | if (atom->GetVECATecED_MSG(tor() != VZero)"U Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": se vect/src/openbabel/include/openbabel/math/vector3.ho:r2783::5::I sApnote: pr'operator!=' has been explicitly marked deprecated hereox() ins Step #3 - "compile-afl-address-x86_64": 278 | tead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38:  Onote: B_expanded from macro 'OB_DEPRECATED_MSG'DE Step #3 - "compile-afl-address-x86_64": PRECA TED_M38SG | (  " U#sdefei vecnteo rO3B:_:DEPIRsEACpprAoTEDx_()M SiGn(stemasgd). [["d)ep Step #3 - "compile-afl-address-x86_64": r e| ca ^t Step #3 - "compile-afl-address-x86_64": ed(ms/src/openbabel/build/include/openbabel/babelconfig.hg)]:]38 Step #3 - "compile-afl-address-x86_64": : 38| : ^ Step #3 - "compile-afl-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]/src/openbabel/src/forcefield.cpp:3719] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": :9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3719 | /src/openbabel/src/mol.cpp:2803 if: (/src/openbabel/src/builder.cpp:23564::23 : warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 2803 Step #3 - "compile-afl-address-x86_64": | if 564 |  ( !hasX && !IsNearZero(atom->x())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2805 | if (!hasY && !IsNearZero(atom->y())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": I 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": sNearZe/src/openbabel/src/mol.cpp:2826:r23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": o(l_ij) 2826 | if (!hasX && !IsNearZero(atom->x())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #de fi|n e | O BI _s D EPRNiEfCeAaTrEZDe r[o[(dle_j (pbonkd))r1ec == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 566 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:568:/src/openbabel/build/include/openbabel/babelconfig.h28::37 :29:warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]note:  Step #3 - "compile-afl-address-x86_64": expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 56837 | | else if (bond3 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 570 | else if (bond4 == VZated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": ero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:572:28: warning:  #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 572 | else if (/src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": b o3735n | d 5 = = iVfZ er(o) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.hI:s273:N5e:a rZenote: ro'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": (length)) { 273 | Step #3 - "compile-afl-address-x86_64": |  ^O Step #3 - "compile-afl-address-x86_64": B_DEPRE/src/openbabel/include/openbabel/obutil.hC:A197T:E3D:_ MSGnote: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": ("U s|  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_De EvectorP3R:E:CIAsTAEpDp r[o[xd(e)p riencsatteeadd].]" Step #3 - "compile-afl-address-x86_64": ) | Step #3 - "compile-afl-address-x86_64":  ^| Step #3 - "compile-afl-address-x86_64":  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3802 | if (IsNearZero(length)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:660:21: /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64":  37warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": | #define OB_DEP 660 | RE if (bCAoTnEdD1 == VZer [[depo)recated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning:  718 | 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": if (bond1 == VZero) Step #3 - "compile-afl-address-x86_64": | 3949 ^ | Step #3 - "compile-afl-address-x86_64":  if (IsNearZero(le/src/openbabel/include/openbabel/math/vector3.hn:g273t:h5_:j i)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": note: /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 720 | else if (bond2 == VZero) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3991 | if (IsNearZero(theta) ||/src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": IsNearZe3252 | ro(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": if ((*rin/src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": git)->Pat 197 | hSize() == 5) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64":  OB_/src/openbabel/include/openbabel/ring.hDEPRE:CATED65 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": :5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37 :29: 65note: | expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | O#defBi_ne OBD_DEEPRECAPTERD [[depreEcCaAtTeEd]D_MSG(]"Use Size Step #3 - "compile-afl-address-x86_64": ( )|  ^ Step #3 - "compile-afl-address-x86_64":  instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | /src/openbabel/src/forcefield.cpp:4006:9:   warning: #de'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": fin 4006 | e if (Is NearZeOro(dl) || BIsN_DEPeRaECATEDrZ_eMSG(rmo(fsagb)s ([d[dleprecated(msg)]] - Step #3 - "compile-afl-address-x86_64": |  ^M Step #3 - "compile-afl-address-x86_64": _PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED /src/openbabel/src/mol.cpp:3274[:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3274 | else if ((*ringit)->PathSize()[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4006 | if (IsNear == 6) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 65 | OB_DEPZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | RECATED_MSG("Use Size() instead") Step #3 - "compile-afl-address-x86_64": | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECA ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64":  38/src/openbabel/src/builder.cpp | : 1089 : 9 :# defwarning: ine'GetFirstAtom' is deprecated [-Wdeprecated-declarations] O Step #3 - "compile-afl-address-x86_64": B_DEPRECATED_MSG(msg) [ [1089d | e p r e cmaotle.dG(emtsFgi)r]s]tA Step #3 - "compile-afl-address-x86_64": t o| m( ^) Step #3 - "compile-afl-address-x86_64": ->GetHyb(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": TED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_/src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9:[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #3 - "compile-afl-address-x86_64": warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1427 | if (bond1 == VZero) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #3 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #3 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #3 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 452 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 443 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 355 | rotor->SetDelta(delta); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 34 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #3 - "compile-afl-address-x86_64": 5 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 589 | gd->GetOriginVector(origin); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #3 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #3 - "compile-afl-address-x86_64": 310 | else if (vs[0][0] == '2') Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #3 - "compile-afl-address-x86_64": 51 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #3 - "compile-afl-address-x86_64": 911 | switch(pRD->ReactionType) Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #3 - "compile-afl-address-x86_64": 990 | switch(pRD->ReactionType) Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #3 - "compile-afl-address-x86_64": 9 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #3 - "compile-afl-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #3 - "compile-afl-address-x86_64": |  ~~~~ ^~~~ Step #3 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | gd->GetOriginVector(origin); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": 158 | switch (chirality) { Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~ Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #3 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #3 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #3 - "compile-afl-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #3 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #3 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #3 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #3 - "compile-afl-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #3 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #3 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #3 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #3 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #3 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #3 - "compile-afl-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #3 - "compile-afl-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #3 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #3 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 1523 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #3 - "compile-afl-address-x86_64": 6 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #3 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #3 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #3 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #3 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #3 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/charges/fromfile.cpp:114:30: warning: object backing the pointer 'name' will be destroyed at the end of the full-expression [-Wdangling-assignment-gsl] Step #3 - "compile-afl-address-x86_64": 114 | char *f = name = (char*)res->GetAtomID( a ).c_str(); Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": 9 warnings generated. Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #3 - "compile-afl-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #3 - "compile-afl-address-x86_64": |  ~~~~~~~~~~~ ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #3 - "compile-afl-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #3 - "compile-afl-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #3 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 4 warnings generated. Step #3 - "compile-afl-address-x86_64": 1 warning generated. Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #3 - "compile-afl-address-x86_64": [ 75%] Built target openbabel Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #3 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #3 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:111:12: warning: null passed to a callee that requires a non-null argument [-Wnonnull] Step #3 - "compile-afl-address-x86_64": 111 | return nullptr; Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 255 | // / \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 270 | // / \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 285 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 287 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 310 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #3 - "compile-afl-address-x86_64": 432 | // \  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": 102 | switch (units.at(i).type) { Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #3 - "compile-afl-address-x86_64": 132 | switch (units.at(i).type) { Step #3 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #3 - "compile-afl-address-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #3 - "compile-afl-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #3 - "compile-afl-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #3 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #3 - "compile-afl-address-x86_64": [ 91%] Linking CXX executable ../bin/obabel Step #3 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 92%] Linking CXX executable ../bin/fuzz_convert Step #3 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #3 - "compile-afl-address-x86_64": 3 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #3 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #3 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #3 - "compile-afl-address-x86_64": 7 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #3 - "compile-afl-address-x86_64": [ 96%] Built target fuzz_obconversion_sdf Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #3 - "compile-afl-address-x86_64": [ 96%] Built target fuzz_obconversion_smiles Step #3 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #3 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #3 - "compile-afl-address-x86_64": 2 warnings generated. Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #3 - "compile-afl-address-x86_64": [ 99%] Built target roundtrip Step #3 - "compile-afl-address-x86_64": [ 99%] Built target obabel Step #3 - "compile-afl-address-x86_64": [ 99%] Built target fuzz_convert Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 190 | x = m2.Get( i, j ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 6 warnings generated. Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #3 - "compile-afl-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #3 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #3 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #3 - "compile-afl-address-x86_64": |  ^ Step #3 - "compile-afl-address-x86_64": 24 warnings generated. Step #3 - "compile-afl-address-x86_64": 17 warnings generated. Step #3 - "compile-afl-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #3 - "compile-afl-address-x86_64": [100%] Built target test_runner Step #3 - "compile-afl-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/afl-address-x86_64/ Finished Step #3 - "compile-afl-address-x86_64" Starting Step #4 - "build-check-afl-address-x86_64" Step #4 - "build-check-afl-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #4 - "build-check-afl-address-x86_64": Unable to find image 'gcr.io/oss-fuzz-base/base-runner:latest' locally Step #4 - "build-check-afl-address-x86_64": latest: Pulling from oss-fuzz-base/base-runner Step #4 - "build-check-afl-address-x86_64": b549f31133a9: Already exists Step #4 - "build-check-afl-address-x86_64": b880dc731500: Already exists Step #4 - "build-check-afl-address-x86_64": 82041dc1a4fa: Already exists Step #4 - "build-check-afl-address-x86_64": f6f9908990c2: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": a01b4cc35442: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 14ecfc0ec653: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": d84b66083db9: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 61836e9deac7: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 1f3606abf545: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 0a296b7504af: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": a6da47b51e29: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 7aedb9e97bc5: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 34e73298de3c: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": c96cc9852dd0: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 5ef855770972: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 59d8edc5c5c1: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 7625284134c6: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 0e6ce95bed55: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 6dfe0c8bf399: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 96515525e0c0: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 01e047d299ca: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": d1548cd4b8ba: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 9667f69f6584: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": c474e10428ad: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 03b17cb6f2dd: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 042a6eb9cc1e: Pulling fs layer Step #4 - "build-check-afl-address-x86_64": 0a296b7504af: Waiting Step #4 - "build-check-afl-address-x86_64": a6da47b51e29: Waiting Step #4 - "build-check-afl-address-x86_64": 34e73298de3c: Waiting Step #4 - "build-check-afl-address-x86_64": 7aedb9e97bc5: Waiting Step #4 - "build-check-afl-address-x86_64": 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"build-check-afl-address-x86_64": 61836e9deac7: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 61836e9deac7: Download complete Step #4 - "build-check-afl-address-x86_64": f6f9908990c2: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": f6f9908990c2: Download complete Step #4 - "build-check-afl-address-x86_64": a6da47b51e29: Download complete Step #4 - "build-check-afl-address-x86_64": 0a296b7504af: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 0a296b7504af: Download complete Step #4 - "build-check-afl-address-x86_64": a01b4cc35442: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": d84b66083db9: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": d84b66083db9: Download complete Step #4 - "build-check-afl-address-x86_64": 7aedb9e97bc5: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 7aedb9e97bc5: Download complete Step #4 - "build-check-afl-address-x86_64": 5ef855770972: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 5ef855770972: Download complete Step #4 - "build-check-afl-address-x86_64": 59d8edc5c5c1: Download complete Step #4 - "build-check-afl-address-x86_64": f6f9908990c2: Pull complete Step #4 - "build-check-afl-address-x86_64": c96cc9852dd0: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": c96cc9852dd0: Download complete Step #4 - "build-check-afl-address-x86_64": 0e6ce95bed55: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 0e6ce95bed55: Download complete Step #4 - "build-check-afl-address-x86_64": 96515525e0c0: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 96515525e0c0: Download complete Step #4 - "build-check-afl-address-x86_64": 01e047d299ca: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 01e047d299ca: Download complete Step #4 - "build-check-afl-address-x86_64": 1f3606abf545: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 1f3606abf545: Download complete Step #4 - "build-check-afl-address-x86_64": a01b4cc35442: Pull complete Step #4 - "build-check-afl-address-x86_64": c474e10428ad: Download complete Step #4 - "build-check-afl-address-x86_64": 9667f69f6584: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 9667f69f6584: Download complete Step #4 - "build-check-afl-address-x86_64": 14ecfc0ec653: Pull complete Step #4 - "build-check-afl-address-x86_64": 34e73298de3c: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 34e73298de3c: Download complete Step #4 - "build-check-afl-address-x86_64": 042a6eb9cc1e: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 042a6eb9cc1e: Download complete Step #4 - "build-check-afl-address-x86_64": 4f467d64479a: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 4f467d64479a: Download complete Step #4 - "build-check-afl-address-x86_64": 03b17cb6f2dd: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 03b17cb6f2dd: Download complete Step #4 - "build-check-afl-address-x86_64": d84b66083db9: Pull complete Step #4 - "build-check-afl-address-x86_64": 61836e9deac7: Pull complete Step #4 - "build-check-afl-address-x86_64": d1548cd4b8ba: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": d1548cd4b8ba: Download complete Step #4 - "build-check-afl-address-x86_64": 7625284134c6: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 7625284134c6: Download complete Step #4 - "build-check-afl-address-x86_64": 6dfe0c8bf399: Verifying Checksum Step #4 - "build-check-afl-address-x86_64": 6dfe0c8bf399: Download complete Step #4 - "build-check-afl-address-x86_64": 1f3606abf545: Pull complete Step #4 - "build-check-afl-address-x86_64": 0a296b7504af: Pull complete Step #4 - "build-check-afl-address-x86_64": a6da47b51e29: Pull complete Step #4 - "build-check-afl-address-x86_64": 7aedb9e97bc5: Pull complete Step #4 - "build-check-afl-address-x86_64": 34e73298de3c: Pull complete Step #4 - "build-check-afl-address-x86_64": c96cc9852dd0: Pull complete Step #4 - "build-check-afl-address-x86_64": 5ef855770972: Pull complete Step #4 - "build-check-afl-address-x86_64": 59d8edc5c5c1: Pull complete Step #4 - "build-check-afl-address-x86_64": 7625284134c6: Pull complete Step #4 - "build-check-afl-address-x86_64": 0e6ce95bed55: Pull complete Step #4 - "build-check-afl-address-x86_64": 6dfe0c8bf399: Pull complete Step #4 - "build-check-afl-address-x86_64": 96515525e0c0: Pull complete Step #4 - "build-check-afl-address-x86_64": 01e047d299ca: Pull complete Step #4 - "build-check-afl-address-x86_64": d1548cd4b8ba: Pull complete Step #4 - "build-check-afl-address-x86_64": 9667f69f6584: Pull complete Step #4 - "build-check-afl-address-x86_64": c474e10428ad: Pull complete Step #4 - "build-check-afl-address-x86_64": 03b17cb6f2dd: Pull complete Step #4 - "build-check-afl-address-x86_64": 042a6eb9cc1e: Pull complete Step #4 - "build-check-afl-address-x86_64": 4f467d64479a: Pull complete Step #4 - "build-check-afl-address-x86_64": Digest: sha256:42559fdc03a2ac43e06298aaf24486fb7859f1efe1170f580064866f119fc0eb Step #4 - "build-check-afl-address-x86_64": Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-runner:latest Step #4 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpk2upq6q2/fuzz_obconversion_sdf Step #4 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpk2upq6q2/fuzz_obconversion_smiles Step #4 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpk2upq6q2/fuzz_convert Finished Step #4 - "build-check-afl-address-x86_64" Starting Step #5 Step #5: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #5 Starting Step #6 Step #6: Already have image: gcr.io/oss-fuzz/openbabel Step #6: adding: SanitizerCoverageLTO.so (deflated 69%) Step #6: adding: SanitizerCoveragePCGUARD.so (deflated 70%) Step #6: adding: afl-addseeds (deflated 57%) Step #6: adding: afl-analyze (deflated 55%) Step #6: adding: afl-c++ (deflated 57%) Step #6: adding: afl-c++.8 (deflated 55%) Step #6: adding: afl-cc (deflated 57%) Step #6: adding: afl-cc.8 (deflated 55%) Step #6: adding: afl-clang (deflated 57%) Step #6: adding: afl-clang++ (deflated 57%) Step #6: adding: afl-clang-fast (deflated 57%) Step #6: adding: afl-clang-fast++ (deflated 57%) Step #6: adding: afl-clang-fast++.8 (deflated 55%) Step #6: adding: afl-clang-fast.8 (deflated 55%) Step #6: adding: afl-clang-lto (deflated 57%) Step #6: adding: afl-clang-lto++ (deflated 57%) Step #6: adding: afl-clang-lto++.8 (deflated 55%) Step #6: adding: afl-clang-lto.8 (deflated 55%) Step #6: adding: afl-cmin (deflated 70%) Step #6: adding: afl-cmin.bash (deflated 65%) Step #6: adding: afl-cmin.py (deflated 71%) Step #6: adding: afl-compiler-rt-32.o (deflated 54%) Step #6: adding: afl-compiler-rt-64.o (deflated 67%) Step #6: adding: afl-compiler-rt.o (deflated 67%) Step #6: adding: afl-fuzz (deflated 55%) Step #6: adding: afl-g++ (deflated 57%) Step #6: adding: afl-gcc (deflated 57%) Step #6: adding: afl-gotcpu (deflated 62%) Step #6: adding: afl-ld-lto (deflated 62%) Step #6: adding: afl-llvm-dict2file.so (deflated 69%) Step #6: adding: afl-llvm-lto-instrumentlist.so (deflated 71%) Step #6: adding: afl-llvm-pass.so (deflated 69%) Step #6: adding: afl-llvm-rt-lto-32.o (deflated 20%) Step #6: adding: afl-llvm-rt-lto-64.o (deflated 20%) Step #6: adding: afl-llvm-rt-lto.o (deflated 20%) Step #6: adding: afl-lto (deflated 57%) Step #6: adding: afl-lto++ (deflated 57%) Step #6: adding: afl-lto++.8 (deflated 55%) Step #6: adding: afl-lto.8 (deflated 55%) Step #6: adding: afl-persistent-config (deflated 59%) Step #6: adding: afl-plot (deflated 65%) Step #6: adding: afl-showmap (deflated 55%) Step #6: adding: afl-system-config (deflated 63%) Step #6: adding: afl-tmin (deflated 55%) Step #6: adding: afl-whatsup (deflated 69%) Step #6: adding: afl-wine-trace (deflated 70%) Step #6: adding: afl_options.txt (deflated 20%) Step #6: adding: cmplog-instructions-pass.so (deflated 71%) Step #6: adding: cmplog-routines-pass.so (deflated 70%) Step #6: adding: cmplog-switches-pass.so (deflated 70%) Step #6: adding: compare-transform-pass.so (deflated 69%) Step #6: adding: dynamic_list.txt (deflated 76%) Step #6: adding: fuzz_convert (deflated 65%) Step #6: adding: fuzz_obconversion_sdf (deflated 65%) Step #6: adding: fuzz_obconversion_smiles (deflated 65%) Step #6: adding: injection-pass.so (deflated 70%) Step #6: adding: libAFLDriver.a (deflated 64%) Step #6: adding: libAFLQemuDriver.a (deflated 65%) Step #6: adding: llvm-symbolizer (deflated 65%) Step #6: adding: split-compares-pass.so (deflated 69%) Step #6: adding: split-switches-pass.so (deflated 70%) Finished Step #6 Starting Step #7 Step #7: Pulling image: gcr.io/oss-fuzz-base/uploader Step #7: Using default tag: latest Step #7: latest: Pulling from oss-fuzz-base/uploader Step #7: c62795f78da9: Pulling fs layer Step #7: d4fceeeb758e: Pulling fs layer Step #7: 5c9125a401ae: Pulling fs layer Step #7: 0062f774e994: Pulling fs layer Step #7: 6b33fd031fac: Pulling fs layer Step #7: 7eb39101e508: Pulling fs layer Step #7: 89257482f398: Pulling fs layer Step #7: 89257482f398: Waiting Step #7: d4fceeeb758e: Verifying Checksum Step #7: d4fceeeb758e: Download complete Step #7: 6b33fd031fac: Download complete Step #7: 5c9125a401ae: Download complete Step #7: 0062f774e994: Verifying Checksum Step #7: 89257482f398: Verifying Checksum Step #7: 89257482f398: Download complete Step #7: c62795f78da9: Verifying Checksum Step #7: c62795f78da9: Download complete Step #7: 7eb39101e508: Verifying Checksum Step #7: 7eb39101e508: Download complete Step #7: c62795f78da9: Pull complete Step #7: d4fceeeb758e: Pull complete Step #7: 5c9125a401ae: Pull complete Step #7: 0062f774e994: Pull complete Step #7: 6b33fd031fac: Pull complete Step #7: 7eb39101e508: Pull complete Step #7: 89257482f398: Pull complete Step #7: Digest: sha256:5717ba63d13b5515063e2a6ccad09fb5bf32a86c8e0798a363d81c2be522e411 Step #7: Status: Downloaded newer image for gcr.io/oss-fuzz-base/uploader:latest Step #7: gcr.io/oss-fuzz-base/uploader:latest Step #7: % Total % Received % Xferd Average Speed Time Time Time Current Step #7: Dload Upload Total Spent Left Speed Step #7: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 730 --:--:-- --:--:-- --:--:-- 733 Finished Step #7 Starting Step #8 Step #8: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #8: % Total % Received % Xferd Average Speed Time Time Time Current Step #8: Dload Upload Total Spent Left Speed Step #8: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 3 81.5M 0 0 3 3264k 0 33.6M 0:00:02 --:--:-- 0:00:02 33.5M 100 81.5M 0 0 100 81.5M 0 92.4M --:--:-- --:--:-- --:--:-- 92.4M Finished Step #8 Starting Step #9 Step #9: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #9: % Total % Received % Xferd Average Speed Time Time Time Current Step #9: Dload Upload Total Spent Left Speed Step #9: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 219 --:--:-- --:--:-- --:--:-- 219 Finished Step #9 Starting Step #10 Step #10: Already have image (with digest): gcr.io/cloud-builders/curl Step #10: % Total % Received % Xferd Average Speed Time Time Time Current Step #10: Dload Upload Total Spent Left Speed Step #10: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 162 --:--:-- --:--:-- --:--:-- 164 Finished Step #10 Starting Step #11 Step #11: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #11 Starting Step #12 - "compile-honggfuzz-address-x86_64" Step #12 - "compile-honggfuzz-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": vm.mmap_rnd_bits = 28 Step #12 - "compile-honggfuzz-address-x86_64": Skipping compilation; using precompiled honggfuzz Step #12 - "compile-honggfuzz-address-x86_64": done. Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": CC=clang Step #12 - "compile-honggfuzz-address-x86_64": CXX=clang++ Step #12 - "compile-honggfuzz-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp Step #12 - "compile-honggfuzz-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp -stdlib=libc++ Step #12 - "compile-honggfuzz-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #12 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #12 - "compile-honggfuzz-address-x86_64": + export 'CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp -stdlib=libc++ -std=c++17' Step #12 - "compile-honggfuzz-address-x86_64": + CXXFLAGS='-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp -stdlib=libc++ -std=c++17' Step #12 - "compile-honggfuzz-address-x86_64": + sed -i 's/CMAKE_CXX_STANDARD 11/CMAKE_CXX_STANDARD 17/g' CMakeLists.txt Step #12 - "compile-honggfuzz-address-x86_64": + sed -i 's/std::random/\/\/std::random/g' test/addhtest.cpp test/aliastest.cpp test/aligntest.cpp test/aromatest.cpp test/atom.cpp test/automorphismtest.cpp test/bond.cpp test/buildertest.cpp test/canonconsistenttest.cpp test/canonfragmenttest.cpp test/canonstabletest.cpp test/cansmi.cpp test/carspacegrouptest.cpp test/charge_gasteiger.cpp test/charge_mmff94.cpp test/cifspacegrouptest.cpp test/cistranstest.cpp test/cmlreadfile.cpp test/conversion.cpp test/conversiontest.cpp test/datatest.cpp test/ffgaff.cpp test/ffghemical.cpp test/ffmmff94.cpp test/ffuff.cpp test/formalcharge.cpp test/format.cpp test/formula.cpp test/graphsymtest.cpp test/gziptest.cpp test/implicitHtest.cpp test/inchiwrite.cpp test/internalcoord.cpp test/invalidsmarts.cpp test/invalidsmiles.cpp test/isomorphismtest.cpp test/iterators.cpp test/logp_psa.cpp test/lssrtest.cpp test/maereadertest.cpp test/math.cpp test/mmff94validate.cpp test/mol.cpp test/multicmltest.cpp test/obmolbenchmark.cpp test/obtest.cpp test/pdbreadfile.cpp test/periodictest.cpp test/phmodel.cpp test/regressionstest.cpp test/residue.cpp test/ringtest.cpp test/rotortest.cpp test/roundtrip.cpp test/shuffletest.cpp test/smartsparse.cpp test/smartstest.cpp test/smilesmatch.cpp test/smilestest.cpp test/smileytest.cpp test/spectrophoretest.cpp test/squareplanartest.cpp test/stereoperceptiontest.cpp test/stereotest.cpp test/strip.cpp test/tautomertest.cpp test/tetrahedraltest.cpp test/tetranonplanartest.cpp test/tetraplanartest.cpp test/uniqueidtest.cpp test/unitcell.cpp test/zipstream.cpp Step #12 - "compile-honggfuzz-address-x86_64": + mkdir build Step #12 - "compile-honggfuzz-address-x86_64": + cd build Step #12 - "compile-honggfuzz-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #12 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #12 - "compile-honggfuzz-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #12 - "compile-honggfuzz-address-x86_64": CMake. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #12 - "compile-honggfuzz-address-x86_64": CMake that the project does not need compatibility with older versions. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- The C compiler identification is Clang 22.0.0 Step #12 - "compile-honggfuzz-address-x86_64": -- The CXX compiler identification is Clang 22.0.0 Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compiler ABI info Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compiler ABI info - done Step #12 - "compile-honggfuzz-address-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compile features Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting C compile features - done Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compiler ABI info Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compiler ABI info - done Step #12 - "compile-honggfuzz-address-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compile features Step #12 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compile features - done Step #12 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #12 - "compile-honggfuzz-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #12 - "compile-honggfuzz-address-x86_64": of CMake. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #12 - "compile-honggfuzz-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #12 - "compile-honggfuzz-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #12 - "compile-honggfuzz-address-x86_64": behavior and not rely on setting a policy to OLD. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Using included inchi library. Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #12 - "compile-honggfuzz-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #12 - "compile-honggfuzz-address-x86_64": libxml2 not found - disabling CML support! Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for conio.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for conio.h - not found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/time.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/time.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for time.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for time.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strings.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strings.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for regex.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for regex.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for C++ include sstream Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for C++ include sstream - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for rint Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for rint - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for snprintf Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for snprintf - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sranddev Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sranddev - not found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strcasecmp Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strcasecmp - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strncasecmp Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for strncasecmp - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for xdrstdio_create Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for xdrstdio_create - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for dlopen in dl Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for dlopen in dl - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/types.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for sys/types.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stdint.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stdint.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stddef.h Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for stddef.h - found Step #12 - "compile-honggfuzz-address-x86_64": -- Check size of clock_t Step #12 - "compile-honggfuzz-address-x86_64": -- Check size of clock_t - done Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #12 - "compile-honggfuzz-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #12 - "compile-honggfuzz-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #12 - "compile-honggfuzz-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #12 - "compile-honggfuzz-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #12 - "compile-honggfuzz-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #12 - "compile-honggfuzz-address-x86_64": -- Found Threads: TRUE Step #12 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for getopt Step #12 - "compile-honggfuzz-address-x86_64": -- Looking for getopt - found Step #12 - "compile-honggfuzz-address-x86_64": -- GUI will not be built Step #12 - "compile-honggfuzz-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #12 - "compile-honggfuzz-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #12 - "compile-honggfuzz-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #12 - "compile-honggfuzz-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": Call Stack (most recent call first): Step #12 - "compile-honggfuzz-address-x86_64": test/CMakeLists.txt:233 (include) Step #12 - "compile-honggfuzz-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.11.13") Step #12 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #12 - "compile-honggfuzz-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #12 - "compile-honggfuzz-address-x86_64": CMake. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #12 - "compile-honggfuzz-address-x86_64": CMake that the project does not need compatibility with older versions. Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": -- Configuring done (8.2s) Step #12 - "compile-honggfuzz-address-x86_64": -- Generating done (0.1s) Step #12 - "compile-honggfuzz-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #12 - "compile-honggfuzz-address-x86_64": ++ nproc Step #12 - "compile-honggfuzz-address-x86_64": + make -j 32 Step #12 - "compile-honggfuzz-address-x86_64": [ 0%] Generating bondtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating phmodeldata.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating atomtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating resdata.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating types.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating torlib.h Step #12 - "compile-honggfuzz-address-x86_64": [ 1%] Generating atomizationenergies.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Generating spacegroups.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Generating ringtyp.h Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Built target data_headers Step #12 - "compile-honggfuzz-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 82 | _ival=nullptr; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #12 - "compile-honggfuzz-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast<int>((*i)->PathSize()) == size) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1523 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1539 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1572 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEP/src/openbabel/src/atom.cpp:RE1143:9: warning: CAT'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": ED [[ 1143de | pr ec atifed (Is]] Step #12 - "compile-honggfuzz-address-x86_64": | NearZero(v1.length(), 1.0e- ^3) Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 359 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 361 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 430 | /src/openbabel/src/forcefield.cpp i:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": f 1444 | ( rl.SetFixAtoms(bfixed); Step #12 - "compile-honggfuzz-address-x86_64": |  ^o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": nd1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64":  1457 | combinations *= rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.")/src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": | 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64":  ^ Step #12 - "compile-honggfuzz-address-x86_64":  449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h: 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 432 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38/src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": :38 1622 | rl.SetFixAtoms(fixed); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": : 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64":  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECAT/src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": ED_ 1635 | combinations *= rotor->GetResolution().size(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": MSG(m 449 | Osg) B[_[DdEPRECATED_MeSpG("rSeee GetcTaotrsioneVda(lmusegs()")) Step #12 - "compile-honggfuzz-address-x86_64": | ]] ^ Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  | /src/openbabel/build/include/openbabel/babelconfig.h: ^38:38:  Step #12 - "compile-honggfuzz-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64":  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 434 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead."/src/openbabel/src/forcefield.cpp:1685):43: warning: Step #12 - "compile-honggfuzz-address-x86_64":  'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h: 381685 | : 38 for: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64":  (38 | #undseifginneed O B_iDnEtPR EjC A=T ED_0MS;G (jm srGeectaRetseodl(umtsig)o]n]( Step #12 - "compile-honggfuzz-address-x86_64": )| . ^s Step #12 - "compile-honggfuzz-address-x86_64": ize(); j++) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 450 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | O[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": B_DEPRECATED_MSG/src/openbabel/src/forcefield.cpp:("Use v1712:43e: ctorwarning: 3:'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]: Step #12 - "compile-honggfuzz-address-x86_64": IsApprox() instead ."1712 | ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  /src/openbabel/build/include/openbabel/babelconfig.hfo:r (unsigned int j 38:= 038: ; j < rotnote: or->GetResoluexpanded from macro 'OB_DEPRECATED_MSG'tion( Step #12 - "compile-honggfuzz-address-x86_64": ).size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64": 38|  ^ Step #12 - "compile-honggfuzz-address-x86_64": |  /src/openbabel/include/openbabel/rotor.h:#de449:5f: innote: e 'GetResolution' has been explicitly marked deprecated hereO Step #12 - "compile-honggfuzz-address-x86_64": B_DEPRECATED_ 449 | MSG( OBms_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() insteg) [[adde"p)r Step #12 - "compile-honggfuzz-address-x86_64": e c| at ^e Step #12 - "compile-honggfuzz-address-x86_64": d(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning:  'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]1721 |  Step #12 - "compile-honggfuzz-address-x86_64": weight = 452 | 1  / eroltseor i-f>G (ebtoRned2 =s=o lVuZteiroo) Step #12 - "compile-honggfuzz-address-x86_64": n (| ) ^ Step #12 - "compile-honggfuzz-address-x86_64": .siz/src/openbabel/include/openbabel/math/vector3.he:(273):;5:  Step #12 - "compile-honggfuzz-address-x86_64": note: | 'operator==' has been explicitly marked deprecated here ^ Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64":  273 |  /src/openbabel/include/openbabel/rotor.h: 449 :O5B: _Dnote: EP'GetResolution' has been explicitly marked deprecated hereR Step #12 - "compile-honggfuzz-address-x86_64": ECATED_MSG("Use vector3:: I449s | A p pOrB_oDxEPRECATED(_)MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1761 | instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 454 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 469 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 471 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 473 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 494 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 496 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 498 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 514 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox([ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": ) instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 516 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 518 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 520 | else if (bond4 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 533 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp/src/openbabel/include/openbabel/math/vector3.h:273::52420:: 9: note: 'operator==' has been explicitly marked deprecated herewarning:  Step #12 - "compile-honggfuzz-address-x86_64": 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 273 | 2420O | B _ D E PRiEfCA T(EIDs_NMeSaGr(Ze"rUos(es cvaelcet)o)r 3{:: Step #12 - "compile-honggfuzz-address-x86_64": I s| Ap ^p Step #12 - "compile-honggfuzz-address-x86_64": rox(/src/openbabel/include/openbabel/obutil.h): 197i:n3s:t eadnote: ."'IsNearZero' has been explicitly marked deprecated here) Step #12 - "compile-honggfuzz-address-x86_64":  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 19738 | | O B _#DdEePfRiEnCeAT EODB_ Step #12 - "compile-honggfuzz-address-x86_64": D E|  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2657 | if (IsNePRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 535 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 537 | else if (bond3 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 539 | else if (bond4 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 564 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 566 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": ar(e_n2, e_n1, 1.0e-7)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use Is/src/openbabel/src/builder.cppAp:p568r:o28x:( ) iwarning: nst'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]ea Step #12 - "compile-honggfuzz-address-x86_64": d ") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: 568 |  note:  expanded from macro 'OB_DEPRECATED_MSG'  Step #12 - "compile-honggfuzz-address-x86_64": els38e |  i f  #(dbeofnidn3e =O=B _VDZEePrRECoA)TE Step #12 - "compile-honggfuzz-address-x86_64": D _| MS ^G Step #12 - "compile-honggfuzz-address-x86_64": (msg) /src/openbabel/include/openbabel/math/vector3.h[:[273d:e5p:r ecanote: te'operator==' has been explicitly marked deprecated hered( Step #12 - "compile-honggfuzz-address-x86_64": m sg)]]273 Step #12 - "compile-honggfuzz-address-x86_64": | |  ^O Step #12 - "compile-honggfuzz-address-x86_64": B_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp| :2725:13: ^ Step #12 - "compile-honggfuzz-address-x86_64": warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | /src/openbabel/src/builder.cpp :570 :O28B:_ DEPwarning: R'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]E Step #12 - "compile-honggfuzz-address-x86_64": CATED 570 | _MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": else if (b/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": ond4 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 572 | else if (bond5 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 660 | /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2788 | if (atom->GetVector() != VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2805 | if (!hasY && !IsNearZero(atom->y())) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2826 | if (!hasX && !Is NeariZerof(at (bond1 == VZeroo) Step #12 - "compile-honggfuzz-address-x86_64": | m- ^> Step #12 - "compile-honggfuzz-address-x86_64": x()/src/openbabel/include/openbabel/math/vector3.h:)273):5 Step #12 - "compile-honggfuzz-address-x86_64": : |  ^note: Step #12 - "compile-honggfuzz-address-x86_64": 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | O B197_ | D E PORBE_CDAETPED_MSG("UsRe vector3::EIsCAATpprEoDx( Step #12 - "compile-honggfuzz-address-x86_64": ) | in ^ Step #12 - "compile-honggfuzz-address-x86_64": stead.") Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h: | 37 ^ Step #12 - "compile-honggfuzz-address-x86_64": :29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | /src/openbabel/build/include/openbabel/babelconfig.h : 38 : 38#:d efinote: neexpanded from macro 'OB_DEPRECATED_MSG' O Step #12 - "compile-honggfuzz-address-x86_64": B_DEP 38 | #define OB_DEPRECATRED_MSGE(CmAsTgE)D [[[[deprdeecparteecda(tmesdg])]]] Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": | |  ^ ^ Step #12 - "compile-honggfuzz-address-x86_64": Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 718 | if (bond1 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 720 | else if (bond2 == VZero) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:3252:/src/openbabel/src/builder.cpp:1089:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] 3252 Step #12 - "compile-honggfuzz-address-x86_64": | if 1089 | ((*ringit)->P a mothSize() ==l. GetF5) Step #12 - "compile-honggfuzz-address-x86_64": irst|  ^ Step #12 - "compile-honggfuzz-address-x86_64": At/src/openbabel/include/openbabel/ring.h:om65:5: ()-note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": >Get65 | OB_DEPHyb()R;EC Step #12 - "compile-honggfuzz-address-x86_64": A TE| D_M ^S Step #12 - "compile-honggfuzz-address-x86_64": G("Use/src/openbabel/include/openbabel/mol.h :S287i:z5e: () note: ins'GetFirstAtom' has been explicitly marked deprecated herete Step #12 - "compile-honggfuzz-address-x86_64": a d") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 287 | /src/openbabel/build/include/openbabel/babelconfig.h : 38 :38O:B _DEnote: expanded from macro 'OB_DEPRECATED_MSG'P Step #12 - "compile-honggfuzz-address-x86_64": R ECATED Step #12 - "compile-honggfuzz-address-x86_64": 38 | |  ^ Step #12 - "compile-honggfuzz-address-x86_64": #defin/src/openbabel/build/include/openbabel/babelconfig.he :O37B:_29D:E PREnote: CATexpanded from macro 'OB_DEPRECATED'ED Step #12 - "compile-honggfuzz-address-x86_64": _ MSG(msg37) | [ [ d e#pdreefcianteed (OB_DmEsPgR)E]C]AT Step #12 - "compile-honggfuzz-address-x86_64": E D| [[ ^d Step #12 - "compile-honggfuzz-address-x86_64": eprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3735 | if (IsNearZero(length)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:3274:29: /src/openbabel/include/openbabel/obutil.hwarning: :197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations]/src/openbabel/build/include/openbabel/babelconfig.h: Step #12 - "compile-honggfuzz-address-x86_64": 37:29: note: expanded from macro 'OB_DEPRECATED' 3274 | Step #12 - "compile-honggfuzz-address-x86_64": el se if ((*ringit)->PathSize() == 6) Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead"/src/openbabel/src/forcefield.cpp) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[dep:3789:9rec:ated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": expanded from macro 'OB_DEPRECATED' 3343 | loopSize = (*ringit)->PathSize(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead" Step #12 - "compile-honggfuzz-address-x86_64": ) Step #12 - "compile-honggfuzz-address-x86_64": 37 | |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38 :38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^38 | #define OB_DEPRECAT Step #12 - "compile-honggfuzz-address-x86_64": ED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3802 | if (IsNearZero(length)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1427 | if (bond1 == VZero) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() inste/src/openbabel/src/forcefield.cpp:4195ad.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": :389: |  warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64":  warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 452 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 443 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 355 | rotor->SetDelta(delta); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 34 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 5 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 589 | gd->GetOriginVector(origin); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 51 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() ins[ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": tead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #12 - "compile-honggfuzz-address-x86_64": 310 | else if (vs[0][0] == '2') Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 9 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 911 | switch(pRD->ReactionType) Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 990 | switch(pRD->ReactionType) Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #12 - "compile-honggfuzz-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~ ^~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | gd->GetOriginVector(origin); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 158 | switch (chirality) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #12 - "compile-honggfuzz-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #12 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #12 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #12 - "compile-honggfuzz-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #12 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #12 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #12 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #12 - "compile-honggfuzz-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #12 - "compile-honggfuzz-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 344 | if (IsNearZero(rab, [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 1523 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 6[ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/charges/fromfile.cpp:114:30: warning: object backing the pointer 'name' will be destroyed at the end of the full-expression [-Wdangling-assignment-gsl] Step #12 - "compile-honggfuzz-address-x86_64": 114 | char *f = name = (char*)res->GetAtomID( a ).c_str(); Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #12 - "compile-honggfuzz-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #12 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~~~~~ ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #12 - "compile-honggfuzz-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #12 - "compile-honggfuzz-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 9 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #12 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 4 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #12 - "compile-honggfuzz-address-x86_64": [ 75%] Built target openbabel Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:111:12: warning: null passed to a callee that requires a non-null argument [-Wnonnull] Step #12 - "compile-honggfuzz-address-x86_64": 111 | return nullptr; Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 255 | // / \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 270 | // / \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 285 | // \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 287 | // \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 310 | // \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #12 - "compile-honggfuzz-address-x86_64": 432 | // \  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 102 | switch (units.at(i).type) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #12 - "compile-honggfuzz-address-x86_64": 132 | switch (units.at(i).type) { Step #12 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #12 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Linking CXX executable ../bin/obabel Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 7 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Built target fuzz_obconversion_sdf Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 96%] Built target fuzz_obconversion_smiles Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 97%] Built target roundtrip Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Built target obabel Step #12 - "compile-honggfuzz-address-x86_64": [ 99%] Built target fuzz_convert Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 190 | x = m2.Get( i, j ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #12 - "compile-honggfuzz-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #12 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #12 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #12 - "compile-honggfuzz-address-x86_64": |  ^ Step #12 - "compile-honggfuzz-address-x86_64": 17 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": 24 warnings generated. Step #12 - "compile-honggfuzz-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #12 - "compile-honggfuzz-address-x86_64": [100%] Built target test_runner Step #12 - "compile-honggfuzz-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/honggfuzz-address-x86_64/ Finished Step #12 - "compile-honggfuzz-address-x86_64" Starting Step #13 - "build-check-honggfuzz-address-x86_64" Step #13 - "build-check-honggfuzz-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #13 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpr01eydou/fuzz_obconversion_sdf Step #13 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpr01eydou/fuzz_obconversion_smiles Step #13 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpr01eydou/fuzz_convert Finished Step #13 - "build-check-honggfuzz-address-x86_64" Starting Step #14 Step #14: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #14 Starting Step #15 Step #15: Already have image: gcr.io/oss-fuzz/openbabel Step #15: adding: fuzz_convert (deflated 65%) Step #15: adding: fuzz_obconversion_sdf (deflated 65%) Step #15: adding: fuzz_obconversion_smiles (deflated 65%) Step #15: adding: honggfuzz (deflated 66%) Step #15: adding: llvm-symbolizer (deflated 65%) Finished Step #15 Starting Step #16 Step #16: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #16: % Total % Received % Xferd Average Speed Time Time Time Current Step #16: Dload Upload Total Spent Left Speed Step #16: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 740 --:--:-- --:--:-- --:--:-- 744 Finished Step #16 Starting Step #17 Step #17: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #17: % Total % Received % Xferd Average Speed Time Time Time Current Step #17: Dload Upload Total Spent Left Speed Step #17: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 40.1M 0 0 100 40.1M 0 68.5M --:--:-- --:--:-- --:--:-- 68.4M Finished Step #17 Starting Step #18 Step #18: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #18: % Total % Received % Xferd Average Speed Time Time Time Current Step #18: Dload Upload Total Spent Left Speed Step #18: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 221 --:--:-- --:--:-- --:--:-- 221 Finished Step #18 Starting Step #19 Step #19: Already have image (with digest): gcr.io/cloud-builders/curl Step #19: % Total % Received % Xferd Average Speed Time Time Time Current Step #19: Dload Upload Total Spent Left Speed Step #19: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 174 --:--:-- --:--:-- --:--:-- 174 Finished Step #19 Starting Step #20 Step #20: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #20 Starting Step #21 - "compile-libfuzzer-address-x86_64" Step #21 - "compile-libfuzzer-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": vm.mmap_rnd_bits = 28 Step #21 - "compile-libfuzzer-address-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": CC=clang Step #21 - "compile-libfuzzer-address-x86_64": CXX=clang++ Step #21 - "compile-libfuzzer-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link Step #21 - "compile-libfuzzer-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link -stdlib=libc++ Step #21 - "compile-libfuzzer-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #21 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #21 - "compile-libfuzzer-address-x86_64": + export 'CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link -stdlib=libc++ -std=c++17' Step #21 - "compile-libfuzzer-address-x86_64": + CXXFLAGS='-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link -stdlib=libc++ -std=c++17' Step #21 - "compile-libfuzzer-address-x86_64": + sed -i 's/CMAKE_CXX_STANDARD 11/CMAKE_CXX_STANDARD 17/g' CMakeLists.txt Step #21 - "compile-libfuzzer-address-x86_64": + sed -i 's/std::random/\/\/std::random/g' test/addhtest.cpp test/aliastest.cpp test/aligntest.cpp test/aromatest.cpp test/atom.cpp test/automorphismtest.cpp test/bond.cpp test/buildertest.cpp test/canonconsistenttest.cpp test/canonfragmenttest.cpp test/canonstabletest.cpp test/cansmi.cpp test/carspacegrouptest.cpp test/charge_gasteiger.cpp test/charge_mmff94.cpp test/cifspacegrouptest.cpp test/cistranstest.cpp test/cmlreadfile.cpp test/conversion.cpp test/conversiontest.cpp test/datatest.cpp test/ffgaff.cpp test/ffghemical.cpp test/ffmmff94.cpp test/ffuff.cpp test/formalcharge.cpp test/format.cpp test/formula.cpp test/graphsymtest.cpp test/gziptest.cpp test/implicitHtest.cpp test/inchiwrite.cpp test/internalcoord.cpp test/invalidsmarts.cpp test/invalidsmiles.cpp test/isomorphismtest.cpp test/iterators.cpp test/logp_psa.cpp test/lssrtest.cpp test/maereadertest.cpp test/math.cpp test/mmff94validate.cpp test/mol.cpp test/multicmltest.cpp test/obmolbenchmark.cpp test/obtest.cpp test/pdbreadfile.cpp test/periodictest.cpp test/phmodel.cpp test/regressionstest.cpp test/residue.cpp test/ringtest.cpp test/rotortest.cpp test/roundtrip.cpp test/shuffletest.cpp test/smartsparse.cpp test/smartstest.cpp test/smilesmatch.cpp test/smilestest.cpp test/smileytest.cpp test/spectrophoretest.cpp test/squareplanartest.cpp test/stereoperceptiontest.cpp test/stereotest.cpp test/strip.cpp test/tautomertest.cpp test/tetrahedraltest.cpp test/tetranonplanartest.cpp test/tetraplanartest.cpp test/uniqueidtest.cpp test/unitcell.cpp test/zipstream.cpp Step #21 - "compile-libfuzzer-address-x86_64": + mkdir build Step #21 - "compile-libfuzzer-address-x86_64": + cd build Step #21 - "compile-libfuzzer-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #21 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #21 - "compile-libfuzzer-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #21 - "compile-libfuzzer-address-x86_64": CMake. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #21 - "compile-libfuzzer-address-x86_64": CMake that the project does not need compatibility with older versions. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- The C compiler identification is Clang 22.0.0 Step #21 - "compile-libfuzzer-address-x86_64": -- The CXX compiler identification is Clang 22.0.0 Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compiler ABI info Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compiler ABI info - done Step #21 - "compile-libfuzzer-address-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compile features Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting C compile features - done Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compiler ABI info Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compiler ABI info - done Step #21 - "compile-libfuzzer-address-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compile features Step #21 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compile features - done Step #21 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #21 - "compile-libfuzzer-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #21 - "compile-libfuzzer-address-x86_64": of CMake. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #21 - "compile-libfuzzer-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #21 - "compile-libfuzzer-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #21 - "compile-libfuzzer-address-x86_64": behavior and not rely on setting a policy to OLD. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Using included inchi library. Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #21 - "compile-libfuzzer-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #21 - "compile-libfuzzer-address-x86_64": libxml2 not found - disabling CML support! Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for conio.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for conio.h - not found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/time.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/time.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for time.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for time.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strings.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strings.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for regex.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for regex.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for C++ include sstream Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for C++ include sstream - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for rint Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for rint - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for snprintf Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for snprintf - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sranddev Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sranddev - not found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strcasecmp Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strcasecmp - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strncasecmp Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for strncasecmp - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for xdrstdio_create Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for xdrstdio_create - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for dlopen in dl Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for dlopen in dl - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/types.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for sys/types.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stdint.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stdint.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stddef.h Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for stddef.h - found Step #21 - "compile-libfuzzer-address-x86_64": -- Check size of clock_t Step #21 - "compile-libfuzzer-address-x86_64": -- Check size of clock_t - done Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #21 - "compile-libfuzzer-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #21 - "compile-libfuzzer-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #21 - "compile-libfuzzer-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #21 - "compile-libfuzzer-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #21 - "compile-libfuzzer-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #21 - "compile-libfuzzer-address-x86_64": -- Found Threads: TRUE Step #21 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for getopt Step #21 - "compile-libfuzzer-address-x86_64": -- Looking for getopt - found Step #21 - "compile-libfuzzer-address-x86_64": -- GUI will not be built Step #21 - "compile-libfuzzer-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #21 - "compile-libfuzzer-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #21 - "compile-libfuzzer-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #21 - "compile-libfuzzer-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": Call Stack (most recent call first): Step #21 - "compile-libfuzzer-address-x86_64": test/CMakeLists.txt:233 (include) Step #21 - "compile-libfuzzer-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.11.13") Step #21 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #21 - "compile-libfuzzer-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #21 - "compile-libfuzzer-address-x86_64": CMake. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #21 - "compile-libfuzzer-address-x86_64": CMake that the project does not need compatibility with older versions. Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": -- Configuring done (8.1s) Step #21 - "compile-libfuzzer-address-x86_64": -- Generating done (0.1s) Step #21 - "compile-libfuzzer-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #21 - "compile-libfuzzer-address-x86_64": ++ nproc Step #21 - "compile-libfuzzer-address-x86_64": + make -j 32 Step #21 - "compile-libfuzzer-address-x86_64": [ 0%] Generating bondtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating phmodeldata.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating atomtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating resdata.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating torlib.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating types.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating atomizationenergies.h Step #21 - "compile-libfuzzer-address-x86_64": [ 1%] Generating ringtyp.h Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Generating spacegroups.h Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Built target data_headers Step #21 - "compile-libfuzzer-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 82 | _ival=nullptr; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp/src/openbabel/src/mcdlutil.cpp::345032: Step #21 - "compile-libfuzzer-address-x86_64": :95/src/openbabel/include/openbabel/grid.h:: 118:11warning: : add explicit braces to avoid dangling else [-Wdangling-else]warning: Step #21 - "compile-libfuzzer-address-x86_64": '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 5032 | if (te s118t | 2 )  f o ri f(j =(_0iv;a lj)< modleelceutlee1 -[>]nBon _ivalds;() Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": ; j++) if/src/openbabel/include/openbabel/grid.h: (105:5: bnote: '_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": STeste 105 | OB_dDEP[jRE]>=0) (*bondLabCATED int *_ival; //!< for integer values \depel)[rj]=1; else (*bondLaecatebd Step #21 - "compile-libfuzzer-address-x86_64": | el ^)[j] Step #21 - "compile-libfuzzer-address-x86_64": =0;/src/openbabel/build/include/openbabel/babelconfig.h:37:29: Step #21 - "compile-libfuzzer-address-x86_64": note: |  ^ Step #21 - "compile-libfuzzer-address-x86_64": expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB/src/openbabel/src/atom.cpp:826:_DEPRECATED [[deprec62:a warning: ted]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations]118 | Step #21 - "compile-libfuzzer-address-x86_64": if (_ival)  826 | de lete if ((*i)->IsI[] _nRinival;g Step #21 - "compile-libfuzzer-address-x86_64": | ( ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: G'_ival' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED ient *_ival; //!< for integer values \deprecated Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #defitneI OB_dx()DEP)RE && CsATEDt atic_[[deprecacted]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ast<i Step #21 - "compile-libfuzzer-address-x86_64": nt>((*i)->PathSize()) == size) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: /src/openbabel/src/forcefield.cpp:note: expanded from macro 'OB_DEPRECATED'482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 1523 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37: 29: 37note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": | 37 | #defi #define OBne O_DBEP_DEPRECRATECEATDED [[[d[epdeprrecaecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": ted]] Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 499 | theta =| OB ^ Step #21 - "compile-libfuzzer-address-x86_64": ForceField::V/src/openbabel/src/atom.cpp:1144:10: warning: ector'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": A 1144 | || IsNenaglrZero(v2.length(), 1.0e-3)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated hereeDerivative( Step #21 - "compile-libfuzzer-address-x86_64": da, d 197 | b, dc); Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37: | 29 ^ Step #21 - "compile-libfuzzer-address-x86_64": : note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5:37 |  #note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": define OB_DEPRECATED [[depreca ted]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 1539 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 1572 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 310 | if (bond2 == VZero |/src/openbabel/src/forcefield.cpp:1301| v1 :8:== Vwarning: Zero) { Step #21 - "compile-libfuzzer-address-x86_64":  |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations]/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 1301 | Step #21 - "compile-libfuzzer-address-x86_64": r l.Set38F | i x At o m#sd(effiixnee dO)B;_ Step #21 - "compile-libfuzzer-address-x86_64": D E| PR ^E Step #21 - "compile-libfuzzer-address-x86_64": CATED_/src/openbabel/include/openbabel/rotor.hM:S633G:5(:m sg)note: ['SetFixAtoms' has been explicitly marked deprecated here[ Step #21 - "compile-libfuzzer-address-x86_64": d eprecat633e | d ( m s OgB)_]]DEPR Step #21 - "compile-libfuzzer-address-x86_64": E C| ATE ^D Step #21 - "compile-libfuzzer-address-x86_64": _MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp: 310 | if (bond2 == VZero || v1 == VZero) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 359 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 449/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": | 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OOB_DEPB_DEREPCATED_MSG("SRee ECGeATtTorsED_ioMSGn(Vmaslg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 361 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": ues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecat/src/openbabel/src/builder.cpped(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": :430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 430 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 432 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 434 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:450:23: /src/openbabel/src/forcefield.cpp:warning: 1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1444 | rl.SetF 450i | xAtoms( fixed) ;  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633if (bond1 == VZero): Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here5:  Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG(note: 'SetFixAtoms' has been explicitly marked deprecated here"Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("S ee SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": | |  ^ ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h note: expanded from macro 'OB_DEPRECATED_MSG': Step #21 - "compile-libfuzzer-address-x86_64": 38 38 | #de:38:f ine OB_DEPnote: RECATED_MSG(msg) [[deprecated(msg)expanded from macro 'OB_DEPRECATED_MSG']] Step #21 - "compile-libfuzzer-address-x86_64": | Step #21 - "compile-libfuzzer-address-x86_64":  38 ^ Step #21 - "compile-libfuzzer-address-x86_64":  | #define OB_DEPRECATED_MSG(msg) [[depreca/src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": t 1457 | combinations *= rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": e/src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": d(msg) 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": ] 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": ] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp: 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 452/src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": :28:  449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": warning:  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 452 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 454 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1635 | combinations *= rotor->GetResolution().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]/src/openbabel/src/forcefield.cpp:1685: Step #21 - "compile-libfuzzer-address-x86_64": 43:  469 | if (bond1 == Vwarning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": Zero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 1685 |  /src/openbabel/include/openbabel/math/vector3.h:273:5fo:r (note: u'operator==' has been explicitly marked deprecated herens Step #21 - "compile-libfuzzer-address-x86_64": i 273 | gned int j = 0; j < rotor->GetR OB_DEPRECATED_MSesolG("Use vector3::Isution().size(); j++) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": Approx() instea/src/openbabel/include/openbabel/rotor.h:449:d.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 5:/src/openbabel/build/include/openbabel/babelconfig.h :38:38: note: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("See GetTorsionVa |  ^ Step #21 - "compile-libfuzzer-address-x86_64": lues/src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": ()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 471 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1712 | for (unsigned int j =38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_ 0MSG(m; j sg< r) [[dotor->Geprecated(metResolusg)tion().]] Step #21 - "compile-libfuzzer-address-x86_64": | siz ^ Step #21 - "compile-libfuzzer-address-x86_64": e(); j++) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTo/src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 473 | rsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG'  Step #21 - "compile-libfuzzer-address-x86_64": el38s | e   #deif (bonfdi3n e= OB_D= VZero)EPRECATED_ Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": MSG(msg) [[depre/src/openbabel/include/openbabel/math/vector3.h:273:5cated(m: note: sg)'operator==' has been explicitly marked deprecated here]] Step #21 - "compile-libfuzzer-address-x86_64": 273 | Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43:  OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(mwarning: sg)]]'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": 1719 | fo|  ^ Step #21 - "compile-libfuzzer-address-x86_64": r (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_/src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 494 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApDEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1721 | weight = 1 / rotor->prox() insteaGetResolutiond.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #d().size(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEefine OB_DEPRECATED_MSPRECATED_MSG(G(msg) [["Sedeprece Gated(msg)etTorsio]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:496:28: [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 496 | enValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: lse if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 498 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:514warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": :23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 514 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 516 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 518 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 520 | else if (bond4 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 533 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 535 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^/src/openbabel/src/forcefield.cpp:2420 Step #21 - "compile-libfuzzer-address-x86_64": :9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2420 | if (IsNearZero(scale)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64":  197 | OB_DEPRE/src/openbabel/build/include/openbabel/babelconfig.h:38C:38:A TEnote: Dexpanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 Step #21 - "compile-libfuzzer-address-x86_64": | #define OB_DEPRE C38A | T E D [#[ddeefpirneec aOtBe_dD]E]PR Step #21 - "compile-libfuzzer-address-x86_64": E C| AT ^E Step #21 - "compile-libfuzzer-address-x86_64": D_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(ms/src/openbabel/src/builder.cppg:537)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": :28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 537 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApp/src/openbabel/src/forcefield.cpp:2657:11rox() i: nwarning: s'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": t 2657 | if (IsNeaer(e_na2d,. "e_)n1 Step #21 - "compile-libfuzzer-address-x86_64": , | 1 ^. Step #21 - "compile-libfuzzer-address-x86_64": 0e-7)) {/src/openbabel/build/include/openbabel/babelconfig.h Step #21 - "compile-libfuzzer-address-x86_64": : 38| :38 ^: Step #21 - "compile-libfuzzer-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPREC ATED_MSG(msg) [[depr189 | OB_DEPRECATED_MSG("Use IsApprox() insteadecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": ") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^/src/openbabel/src/builder.cpp Step #21 - "compile-libfuzzer-address-x86_64": :539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 539 | else if (bond4 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64":  /src/openbabel/src/builder.cpp189: | 564 : 23O:B_DEPRECATED_MSG("Use IsApprox() instead warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 564 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 566 | ") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 568 | else if (bond3 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:/src/openbabel/src/forcefield.cpp5:2838::11: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": warning: 273 | OB_DEPRECATED_MSG("Us'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2838 | if (Ie vector3::IsApprox() instesaNde.a"r()e_ Step #21 - "compile-libfuzzer-address-x86_64": n| 2, ^_ Step #21 - "compile-libfuzzer-address-x86_64": e_n1/src/openbabel/build/include/openbabel/babelconfig.h,: 38_:e38c:o nv)note:  Step #21 - "compile-libfuzzer-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' | Step #21 - "compile-libfuzzer-address-x86_64":  ^ Step #21 - "compile-libfuzzer-address-x86_64": 38 | /src/openbabel/include/openbabel/obutil.h: 189 :#3d:e finenote: O'IsNear' has been explicitly marked deprecated hereB Step #21 - "compile-libfuzzer-address-x86_64": _DEPRECATED_MSG(msg) 189[[ | OdeBp_DErePcRaEtCeAd(msTEgD)]_]MSG Step #21 - "compile-libfuzzer-address-x86_64": ( "Use Is|  ^ Step #21 - "compile-libfuzzer-address-x86_64": A/src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 570 | else if (bond4 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:pprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 572 | else if (bond5 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h/src/openbabel/src/forcefield.cpp:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38: | #d3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": efine OB_DEPRE/src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": CATED_MSG(msg) [[de189 | OB_DEPRECATED_pMreScatGed((msg)]"Use ]IsA Step #21 - "compile-libfuzzer-address-x86_64": pp |  ^ Step #21 - "compile-libfuzzer-address-x86_64": rox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | /src/openbabel/src/builder.cpp:660:21: #dwarning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]e Step #21 - "compile-libfuzzer-address-x86_64": fine O B660_D | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: Enote: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRPRECECAATTED_MSG("UsEe Dve_MSG(msg) [[depctroerc3::IsApproaxt(e)d (imnssgt)e]a]d. Step #21 - "compile-libfuzzer-address-x86_64": " | ) ^ Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 718 | if (bond1 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 720 | else if (bond2 == VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1089 | 3719 |  mol.GetFirstAtom()->GetHyb(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:if (IsNe287:5: arZnote: er'GetFirstAtom' has been explicitly marked deprecated hereo( Step #21 - "compile-libfuzzer-address-x86_64": l_ij) || IsNear Zer287 | o(l _ jOk)B)_ { Step #21 - "compile-libfuzzer-address-x86_64": |  ^DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": | /src/openbabel/include/openbabel/obutil.h ^ Step #21 - "compile-libfuzzer-address-x86_64": :197:3/src/openbabel/build/include/openbabel/babelconfig.h:: 37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATE37 | #define OB_DEPDR Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": ECATED [[depr/src/openbabel/build/include/openbabel/babelconfig.hecate:37:29: d]] Step #21 - "compile-libfuzzer-address-x86_64": note:  expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3735 | if (IsNearZero(length)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3802 | if (IsNearZero(length)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2788: 3962 | 29if (IsNearZero(length_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": :/src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": warning:  197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": 2788 | if (a/src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": tom-> 3973 | if (IsNearZero(length_jl)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": GetVe 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": ct 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": or() != VZero) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:/src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 278:5:  3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": note: /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 'operator!=' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  278 | /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": OB_DEP 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": R/src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": ECATE 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": D/src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": _ 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": MSG("Use vector3::IsApprox() ins/src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": t 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated hereead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38: Step #21 - "compile-libfuzzer-address-x86_64": 38: note: 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": 38 | /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2805 | if (!hasY && !IsNearZero(atom->y())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37/src/openbabel/src/builder.cpp | : 1427 : 17 : warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]#define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2826 | if (!hasX && !IsNearZero(atom-> Step #21 - "compile-libfuzzer-address-x86_64": 1427 | if (bond1 == VZero) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  x(4097) | ) )  Step #21 - "compile-libfuzzer-address-x86_64": | if ^ Step #21 - "compile-libfuzzer-address-x86_64": (IsNearZ/src/openbabel/include/openbabel/obutil.he:r197o:(3t:h etanote: ) 'IsNearZero' has been explicitly marked deprecated here|| Step #21 - "compile-libfuzzer-address-x86_64": IsNearZero(fabs(t h197e | t a O-B _DEPREMC_APTIE)D)) Step #21 - "compile-libfuzzer-address-x86_64": {|  Step #21 - "compile-libfuzzer-address-x86_64": ^ Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: /src/openbabel/include/openbabel/obutil.h:note: 197:expanded from macro 'OB_DEPRECATED'3: Step #21 - "compile-libfuzzer-address-x86_64": note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DE P197R | E C AOTBE_DD E[P[RdEeCpArTeEcDat Step #21 - "compile-libfuzzer-address-x86_64": e d| ]] ^ Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64":  | /src/openbabel/build/include/openbabel/babelconfig.h ^: Step #21 - "compile-libfuzzer-address-x86_64": 37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[/src/openbabel/src/mol.cppd:e2828p:r23e:c atewarning: d]]'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  2828 | if (!hasY && !IsNearZero(atom->y())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3252 | if ((*ringit)->PathSize() == 5) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3274:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3274 | else if ((*ringit)->PathSize() == 6) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 452 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 443 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 355 | rotor->SetDelta(delta); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 34 warnings generated[ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": . Step #21 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 5 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 589 | gd->GetOriginVector(origin); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 51 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG([ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": "use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #21 - "compile-libfuzzer-address-x86_64": 310 | else if (vs[0][0] == '2') Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 9 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 911 | switch(pRD->ReactionType) Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 990 | switch(pRD->ReactionType) Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #21 - "compile-libfuzzer-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~ ^~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | gd->GetOriginVector(origin); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 158 | switch (chirality) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #21 - "compile-libfuzzer-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #21 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #21 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #21 - "compile-libfuzzer-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #21 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #21 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #21 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #21 - "compile-libfuzzer-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #21 - "compile-libfuzzer-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 1523 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 169 | pFF->UpdateCoordinate[ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": s(molCopy); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/charges/fromfile.cpp:114:30: warning: object backing the pointer 'name' will be destroyed at the end of the full-expression [-Wdangling-assignment-gsl] Step #21 - "compile-libfuzzer-address-x86_64": 114 | char *f = name = (char*)res->GetAtomID( a ).c_str(); Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": 9 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #21 - "compile-libfuzzer-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #21 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~~~~~ ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #21 - "compile-libfuzzer-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #21 - "compile-libfuzzer-address-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #21 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 4 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #21 - "compile-libfuzzer-address-x86_64": [ 75%] Built target openbabel Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:111:12: warning: null passed to a callee that requires a non-null argument [-Wnonnull] Step #21 - "compile-libfuzzer-address-x86_64": 111 | return nullptr; Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 255 | // / \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 270 | // / \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 285 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:/src/openbabel/test/stereoperceptiontest.cpp:96:13: 287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape]warning:  Step #21 - "compile-libfuzzer-address-x86_64": 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] 287 | // Step #21 - "compile-libfuzzer-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60. 0, 1.0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  /src/openbabel/include/openbabel/obutil.h:189:3: \ note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": 189 | |  ^ Step #21 - "compile-libfuzzer-address-x86_64": OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #21 - "compile-libfuzzer-address-x86_64": 310 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 140 | backslash and newline separated by space [-Wbackslash-newline-escape] OB_ASSERT(IsNe Step #21 - "compile-libfuzzer-address-x86_64": ar(RAD_TO_ 432 | // \  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 102 | switch (units.at(i).type) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #21 - "compile-libfuzzer-address-x86_64": 132 | switch (units.at(i).type) { Step #21 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #21 - "compile-libfuzzer-address-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Linking CXX executable ../bin/obabel Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #21 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 7 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 96%] Built target fuzz_obconversion_smiles Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Built target fuzz_obconversion_sdf Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Built target roundtrip Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Built target obabel Step #21 - "compile-libfuzzer-address-x86_64": [ 99%] Built target fuzz_convert Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 190 | x = m2.Get( i, j ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64":  /src/openbabel/test/logp_psa.cpp326: | 119 : 7D:i agowarning: nal'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations].S Step #21 - "compile-libfuzzer-address-x86_64": et(0, 0, rand o119m | i z eri.fNe x(tIFslNoeaatr(()p)s;a, Step #21 - "compile-libfuzzer-address-x86_64": | 29 ^. Step #21 - "compile-libfuzzer-address-x86_64": 1)) /src/openbabel/include/openbabel/math/matrix3x3.h{: 188:/7/: Vnote: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | a l u e from JOOEBL_iDbE2PRE Step #21 - "compile-libfuzzer-address-x86_64": C A| TE ^D Step #21 - "compile-libfuzzer-address-x86_64": _MSG("use the non-/src/openbabel/include/openbabel/obutil.hc:o189n:s3t:a nt note: op'IsNear' has been explicitly marked deprecated hereer Step #21 - "compile-libfuzzer-address-x86_64": ator() instead "189 |  ) O Step #21 - "compile-libfuzzer-address-x86_64": B _| DE ^P Step #21 - "compile-libfuzzer-address-x86_64": RECAT/src/openbabel/build/include/openbabel/babelconfig.hE:D38_:M38S:G ("note: Usexpanded from macro 'OB_DEPRECATED_MSG'e Step #21 - "compile-libfuzzer-address-x86_64": IsApprox() ins 38t | e a d " #)de Step #21 - "compile-libfuzzer-address-x86_64": f i| n ^ Step #21 - "compile-libfuzzer-address-x86_64": e OB/src/openbabel/build/include/openbabel/babelconfig.h_:D38E:P38R:E CATnote: EDexpanded from macro 'OB_DEPRECATED_MSG'_M Step #21 - "compile-libfuzzer-address-x86_64": SG(msg) [[de p38r | e c a t e#dd(emfsign)e] ]OB Step #21 - "compile-libfuzzer-address-x86_64": _ D| EP ^R Step #21 - "compile-libfuzzer-address-x86_64": ECATED_MSG(msg) [[dep/src/openbabel/test/math.cppr:e327c:a12t:e d(mwarning: sg)'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations]]] Step #21 - "compile-libfuzzer-address-x86_64":  Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64":  327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #21 - "compile-libfuzzer-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #21 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #21 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #21 - "compile-libfuzzer-address-x86_64": |  ^ Step #21 - "compile-libfuzzer-address-x86_64": 17 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": 24 warnings generated. Step #21 - "compile-libfuzzer-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #21 - "compile-libfuzzer-address-x86_64": [100%] Built target test_runner Step #21 - "compile-libfuzzer-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-address-x86_64/ Finished Step #21 - "compile-libfuzzer-address-x86_64" Starting Step #22 - "build-check-libfuzzer-address-x86_64" Step #22 - "build-check-libfuzzer-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #22 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpttqsgmmf/fuzz_obconversion_sdf Step #22 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpttqsgmmf/fuzz_obconversion_smiles Step #22 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpttqsgmmf/fuzz_convert Finished Step #22 - "build-check-libfuzzer-address-x86_64" Starting Step #23 Step #23: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #23 Starting Step #24 Step #24: Already have image: gcr.io/oss-fuzz/openbabel Step #24: adding: fuzz_convert (deflated 67%) Step #24: adding: fuzz_obconversion_sdf (deflated 67%) Step #24: adding: fuzz_obconversion_smiles (deflated 67%) Step #24: adding: llvm-symbolizer (deflated 65%) Finished Step #24 Starting Step #25 Step #25: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #25: % Total % Received % Xferd Average Speed Time Time Time Current Step #25: Dload Upload Total Spent Left Speed Step #25: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 635 --:--:-- --:--:-- --:--:-- 637 Finished Step #25 Starting Step #26 Step #26: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #26: % Total % Received % Xferd Average Speed Time Time Time Current Step #26: Dload Upload Total Spent Left Speed Step #26: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 42.8M 0 0 100 42.8M 0 72.6M --:--:-- --:--:-- --:--:-- 72.7M Finished Step #26 Starting Step #27 Step #27: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #27: % Total % Received % Xferd Average Speed Time Time Time Current Step #27: Dload Upload Total Spent Left Speed Step #27: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 215 --:--:-- --:--:-- --:--:-- 216 Finished Step #27 Starting Step #28 Step #28: Already have image (with digest): gcr.io/cloud-builders/curl Step #28: % Total % Received % Xferd Average Speed Time Time Time Current Step #28: Dload Upload Total Spent Left Speed Step #28: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 169 --:--:-- --:--:-- --:--:-- 169 Finished Step #28 Starting Step #29 Step #29: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #29 Starting Step #30 - "compile-libfuzzer-undefined-x86_64" Step #30 - "compile-libfuzzer-undefined-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": vm.mmap_rnd_bits = 28 Step #30 - "compile-libfuzzer-undefined-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": CC=clang Step #30 - "compile-libfuzzer-undefined-x86_64": CXX=clang++ Step #30 - "compile-libfuzzer-undefined-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -fno-sanitize=function Step #30 - "compile-libfuzzer-undefined-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -stdlib=libc++ Step #30 - "compile-libfuzzer-undefined-x86_64": RUSTFLAGS=--cfg fuzzing -Cdebuginfo=1 -Cforce-frame-pointers Step #30 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #30 - "compile-libfuzzer-undefined-x86_64": + export 'CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -stdlib=libc++ -std=c++17' Step #30 - "compile-libfuzzer-undefined-x86_64": + CXXFLAGS='-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=unknown-warning-option -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -stdlib=libc++ -std=c++17' Step #30 - "compile-libfuzzer-undefined-x86_64": + sed -i 's/CMAKE_CXX_STANDARD 11/CMAKE_CXX_STANDARD 17/g' CMakeLists.txt Step #30 - "compile-libfuzzer-undefined-x86_64": + sed -i 's/std::random/\/\/std::random/g' test/addhtest.cpp test/aliastest.cpp test/aligntest.cpp test/aromatest.cpp test/atom.cpp test/automorphismtest.cpp test/bond.cpp test/buildertest.cpp test/canonconsistenttest.cpp test/canonfragmenttest.cpp test/canonstabletest.cpp test/cansmi.cpp test/carspacegrouptest.cpp test/charge_gasteiger.cpp test/charge_mmff94.cpp test/cifspacegrouptest.cpp test/cistranstest.cpp test/cmlreadfile.cpp test/conversion.cpp test/conversiontest.cpp test/datatest.cpp test/ffgaff.cpp test/ffghemical.cpp test/ffmmff94.cpp test/ffuff.cpp test/formalcharge.cpp test/format.cpp test/formula.cpp test/graphsymtest.cpp test/gziptest.cpp test/implicitHtest.cpp test/inchiwrite.cpp test/internalcoord.cpp test/invalidsmarts.cpp test/invalidsmiles.cpp test/isomorphismtest.cpp test/iterators.cpp test/logp_psa.cpp test/lssrtest.cpp test/maereadertest.cpp test/math.cpp test/mmff94validate.cpp test/mol.cpp test/multicmltest.cpp test/obmolbenchmark.cpp test/obtest.cpp test/pdbreadfile.cpp test/periodictest.cpp test/phmodel.cpp test/regressionstest.cpp test/residue.cpp test/ringtest.cpp test/rotortest.cpp test/roundtrip.cpp test/shuffletest.cpp test/smartsparse.cpp test/smartstest.cpp test/smilesmatch.cpp test/smilestest.cpp test/smileytest.cpp test/spectrophoretest.cpp test/squareplanartest.cpp test/stereoperceptiontest.cpp test/stereotest.cpp test/strip.cpp test/tautomertest.cpp test/tetrahedraltest.cpp test/tetranonplanartest.cpp test/tetraplanartest.cpp test/uniqueidtest.cpp test/unitcell.cpp test/zipstream.cpp Step #30 - "compile-libfuzzer-undefined-x86_64": + mkdir build Step #30 - "compile-libfuzzer-undefined-x86_64": + cd build Step #30 - "compile-libfuzzer-undefined-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #30 - "compile-libfuzzer-undefined-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #30 - "compile-libfuzzer-undefined-x86_64": CMake. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #30 - "compile-libfuzzer-undefined-x86_64": CMake that the project does not need compatibility with older versions. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- The C compiler identification is Clang 22.0.0 Step #30 - "compile-libfuzzer-undefined-x86_64": -- The CXX compiler identification is Clang 22.0.0 Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compiler ABI info Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compiler ABI info - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compile features Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compile features - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compiler ABI info Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compiler ABI info - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compile features Step #30 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compile features - done Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #30 - "compile-libfuzzer-undefined-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #30 - "compile-libfuzzer-undefined-x86_64": of CMake. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #30 - "compile-libfuzzer-undefined-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #30 - "compile-libfuzzer-undefined-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #30 - "compile-libfuzzer-undefined-x86_64": behavior and not rely on setting a policy to OLD. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Using included inchi library. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #30 - "compile-libfuzzer-undefined-x86_64": libxml2 not found - disabling CML support! Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for conio.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for conio.h - not found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/time.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/time.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for time.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for time.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strings.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strings.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for regex.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for regex.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for C++ include sstream Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for C++ include sstream - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for rint Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for rint - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for snprintf Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for snprintf - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sranddev Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sranddev - not found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strcasecmp Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strcasecmp - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strncasecmp Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for strncasecmp - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for xdrstdio_create Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for xdrstdio_create - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for dlopen in dl Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for dlopen in dl - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/types.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/types.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stdint.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stdint.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stddef.h Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for stddef.h - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check size of clock_t Step #30 - "compile-libfuzzer-undefined-x86_64": -- Check size of clock_t - done Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #30 - "compile-libfuzzer-undefined-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #30 - "compile-libfuzzer-undefined-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found Threads: TRUE Step #30 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for getopt Step #30 - "compile-libfuzzer-undefined-x86_64": -- Looking for getopt - found Step #30 - "compile-libfuzzer-undefined-x86_64": -- GUI will not be built Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #30 - "compile-libfuzzer-undefined-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #30 - "compile-libfuzzer-undefined-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #30 - "compile-libfuzzer-undefined-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": Call Stack (most recent call first): Step #30 - "compile-libfuzzer-undefined-x86_64": test/CMakeLists.txt:233 (include) Step #30 - "compile-libfuzzer-undefined-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.11.13") Step #30 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #30 - "compile-libfuzzer-undefined-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #30 - "compile-libfuzzer-undefined-x86_64": CMake. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #30 - "compile-libfuzzer-undefined-x86_64": CMake that the project does not need compatibility with older versions. Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": -- Configuring done (5.6s) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Generating done (0.1s) Step #30 - "compile-libfuzzer-undefined-x86_64": -- Build files have been written to: /src/openbabel/build Step #30 - "compile-libfuzzer-undefined-x86_64": ++ nproc Step #30 - "compile-libfuzzer-undefined-x86_64": + make -j 32 Step #30 - "compile-libfuzzer-undefined-x86_64": [ 0%] Generating atomtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 0%] Generating bondtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating phmodeldata.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating types.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating atomizationenergies.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating torlib.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating resdata.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating ringtyp.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Generating spacegroups.h Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Built target data_headers Step #30 - "compile-libfuzzer-undefined-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #30 - 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"compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 82 | _ival=nullptr; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 297 | if (!IsNearZero(val[2])) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #30 - "compile-libfuzzer-undefined-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; /src/openbabel/src/atom.cpp:826 :62: /warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": /!< for 826 inte | g e r vialfues \ (depr(*ie)->IsInRingc(GetIdx())ated Step #30 - "compile-libfuzzer-undefined-x86_64": && | static_cast<int ^>((*i)->PathS Step #30 - "compile-libfuzzer-undefined-x86_64": ize(/src/openbabel/build/include/openbabel/babelconfig.h:)) 37== s:i29: ze)note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECAT| ED ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  [[/src/openbabel/include/openbabel/ring.h:d65:5: note: 'PathSize' has been explicitly marked deprecated hereep Step #30 - "compile-libfuzzer-undefined-x86_64": re c65 | a Oted]] Step #30 - "compile-libfuzzer-undefined-x86_64": | B ^ Step #30 - "compile-libfuzzer-undefined-x86_64": _DEPREIn file included from C/src/openbabel/src/forcefield.cppA:34: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: Twarning: '_ival' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": ED 118 | _ MS G( i"f Use( _Sivailz) ed() inelsteaed")te Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h: 38[] _i:val; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 38/src/openbabel/include/openbabel/grid.h::105:5: note: '_ival' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64":  105 | OB_DEPRECATED int *_ival; note: //!< for integer values \deprecaexpanded from macro 'OB_DEPRECATED_MSG'te Step #30 - "compile-libfuzzer-undefined-x86_64": d Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: 38 | expanded from macro 'OB_DEPRECATED'  Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #d ef i#ne OB_DEPRECATED [[dedprefeicatned]] Step #30 - "compile-libfuzzer-undefined-x86_64": | e OB ^_ Step #30 - "compile-libfuzzer-undefined-x86_64": DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1523 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1539 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1572 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DE/src/openbabel/src/builder.cpp:PRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 |  /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": OB_ D1301 | rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": EPRECATED_MSG("Use ve 38 | ct #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": or3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 359 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:361:26:  warning: 449 |  'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]  Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECAT E361D | _ M S G (  " S e e GeeltsTeor siiofnV a(lbuoensd(2) "==) V Step #30 - "compile-libfuzzer-undefined-x86_64": Z e| ro ^) Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": | /src/openbabel/build/include/openbabel/babelconfig.h: ^38 Step #30 - "compile-libfuzzer-undefined-x86_64": :38: /src/openbabel/include/openbabel/math/vector3.hnote: :273expanded from macro 'OB_DEPRECATED_MSG':5 Step #30 - "compile-libfuzzer-undefined-x86_64": : note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG (273m | s g ) [O[Bd_eDpErPeRcEaCtAeTdE(Dm_sMgS)G](]" Step #30 - "compile-libfuzzer-undefined-x86_64": U s| e ^v Step #30 - "compile-libfuzzer-undefined-x86_64": ector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 430 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 432 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 434 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64": | /src/openbabel/src/builder.cpp: ^450 Step #30 - "compile-libfuzzer-undefined-x86_64": :23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]/src/openbabel/include/openbabel/rotor.h Step #30 - "compile-libfuzzer-undefined-x86_64": :633:5: note:  'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECA450T | E D _ M S G ("See S e t Fifi x(ebdoBnodn1d =s=( )") Step #30 - "compile-libfuzzer-undefined-x86_64": | V ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:Zero)38: Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: note: 'operator==' has been explicitly marked deprecated hereexpanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #d ef273 | OB_iDnEe PORB_DEPRECATED_MSG(msg) [[depErecated(msCgAT)]] Step #30 - "compile-libfuzzer-undefined-x86_64": ED_MSG("Use v| e ^c Step #30 - "compile-libfuzzer-undefined-x86_64": tor3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1457 | combinations *= rotor->GetResolution().s/src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": ize( 452 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: ); Step #30 - "compile-libfuzzer-undefined-x86_64": 'operator==' has been explicitly marked deprecated here |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 |  Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IOB_DEPRECATED_MSG("See sApprGetToox() irsinonsVtaelaude.s"())" Step #30 - "compile-libfuzzer-undefined-x86_64": ) | Step #30 - "compile-libfuzzer-undefined-x86_64":  ^| Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h/src/openbabel/build/include/openbabel/babelconfig.h::38:38:38 :38:note:  expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | 38 | # d e f#idneef iOnBe_ DOEBP_RDEEPCRAETCEADT_EMDS_GM(SmGs(gm)s g[)[ d[e[pdreepcraetceadt(edm(smgs)]]g Step #30 - "compile-libfuzzer-undefined-x86_64": )| ]] ^ Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64":  |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:454:/src/openbabel/src/forcefield.cpp28: :1482warning: :52:'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]  Step #30 - "compile-libfuzzer-undefined-x86_64":  warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1482 | 454 | r o t o r K e y [ i] e=l sgeenerat ori.fNe x(tbIonntd(3) =%= rVZeroo)tor-> Step #30 - "compile-libfuzzer-undefined-x86_64": G e| tR ^e Step #30 - "compile-libfuzzer-undefined-x86_64": solution()/src/openbabel/include/openbabel/math/vector3.h.s:i273z:e5(:) ; Step #30 - "compile-libfuzzer-undefined-x86_64": note: | 'operator==' has been explicitly marked deprecated here ^ Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::449 | OB_DEPREICAsTAEpDp_rMoSxG(() i"nSsetee aGde.t"To)rsi Step #30 - "compile-libfuzzer-undefined-x86_64": o n| Va ^l Step #30 - "compile-libfuzzer-undefined-x86_64": ues()"/src/openbabel/build/include/openbabel/babelconfig.h):38 Step #30 - "compile-libfuzzer-undefined-x86_64": : 38| : ^ Step #30 - "compile-libfuzzer-undefined-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h :38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #defi38n | e OB_ D E#PdefRinEeC AOTBE_DD_EMSPGR(EmCsAgT)E D[_[MdSeGp(rmesgc)a t[e[dd(empsgr)e]c]ate Step #30 - "compile-libfuzzer-undefined-x86_64": d (| ms ^g Step #30 - "compile-libfuzzer-undefined-x86_64": )]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 469 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 471 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 473 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 494 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1635 | combinations *= rotor->GetResolution().size(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1685 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]1712 | Step #30 - "compile-libfuzzer-undefined-x86_64": for496 | ( u n s i g n e d   inetls ej = i0f; j( b GVeZteRreo)so Step #30 - "compile-libfuzzer-undefined-x86_64": l u| ti ^o Step #30 - "compile-libfuzzer-undefined-x86_64": n().size()/src/openbabel/include/openbabel/math/vector3.h;: 273j:+5+:) {note: Step #30 - "compile-libfuzzer-undefined-x86_64":  'operator==' has been explicitly marked deprecated here|  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 273'GetResolution' has been explicitly marked deprecated here |  Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1720 | if (I OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 498sNear(worstE, bestE, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp/src/openbabel/src/forcefield.cpp:2788:29:: 1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": warning:  1721 | 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]  Step #30 - "compile-libfuzzer-undefined-x86_64": weigh t2788 | =  1  / irfot o(ra-t>oGme-t>RGeestoVleucttioorn(()) .!s=i zVeZ(e)r;o) Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": | | ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:/src/openbabel/include/openbabel/math/vector3.h5::278 :5:note: 'GetResolution' has been explicitly marked deprecated herenote: Step #30 - "compile-libfuzzer-undefined-x86_64": 'operator!=' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DE P278R | E C A T EODB__MDSEGP(RE"CSAeTeE DG_eMtSTGo(rs"iUosneV avleucetso(r)3"::)Is Step #30 - "compile-libfuzzer-undefined-x86_64": Ap p| ro ^x Step #30 - "compile-libfuzzer-undefined-x86_64": () /src/openbabel/build/include/openbabel/babelconfig.hi:n38s:t38e:a d."note: )expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 38 |  /src/openbabel/build/include/openbabel/babelconfig.h : 38 :#38d:e finnote: e expanded from macro 'OB_DEPRECATED_MSG'OB Step #30 - "compile-libfuzzer-undefined-x86_64": _DEPRECATED_ M38S | G ( m s g#)d e[f[idneep rOeBc_aDtEePdR(EmCsAgT)E]D]_M Step #30 - "compile-libfuzzer-undefined-x86_64": S G| (m ^s Step #30 - "compile-libfuzzer-undefined-x86_64": g) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1761 |  /src/openbabel/src/mol.cpp : 2805:f23o:r  (warning: un'IsNearZero' is deprecated [-Wdeprecated-declarations]si Step #30 - "compile-libfuzzer-undefined-x86_64": gned int j =  02805 | ; j < r o toirf-> G(e!thReassoYl u&t&i o!nI(s)N.esairzZee(r)o;( ajt+o+m)- >{y( Step #30 - "compile-libfuzzer-undefined-x86_64": ) )| ) ^ Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: /src/openbabel/include/openbabel/obutil.h:197note: :3'GetResolution' has been explicitly marked deprecated here: Step #30 - "compile-libfuzzer-undefined-x86_64": note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197449 | | O B _ODBE_PRDEECPARTEECDAT Step #30 - "compile-libfuzzer-undefined-x86_64": E D| _M ^S Step #30 - "compile-libfuzzer-undefined-x86_64": G(/src/openbabel/build/include/openbabel/babelconfig.h":S37e:e29 :G etTnote: orexpanded from macro 'OB_DEPRECATED'sio Step #30 - "compile-libfuzzer-undefined-x86_64": nV a37l | u e s ( )#"de)fi Step #30 - "compile-libfuzzer-undefined-x86_64": n e| O ^B Step #30 - "compile-libfuzzer-undefined-x86_64": _DE/src/openbabel/build/include/openbabel/babelconfig.hP:R38E:C38A:T ED note: [[expanded from macro 'OB_DEPRECATED_MSG'de Step #30 - "compile-libfuzzer-undefined-x86_64": prec a38t | e d ] ] # Step #30 - "compile-libfuzzer-undefined-x86_64": d e| fi ^n Step #30 - "compile-libfuzzer-undefined-x86_64": e OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  | els/src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2826 | if (!hasX && !IsNearZero(atom->x())) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": e if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 514 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 516 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 518 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": | /src/openbabel/src/forcefield.cpp:2420:9: ^ warning: Step #30 - "compile-libfuzzer-undefined-x86_64": 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2420 | if (IsNearZero(scale)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 520 | else if (bond4 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 533 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 535 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 537 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  | /src/openbabel/src/forcefield.cpp: ^2657 Step #30 - "compile-libfuzzer-undefined-x86_64": :11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3/src/openbabel/src/builder.cpp:: 539:note: 28:'IsNear' has been explicitly marked deprecated here  Step #30 - "compile-libfuzzer-undefined-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 189539 | | O B _ D E P R E C A TEeDl_sMeSG (i"fUs e( bIosnAdp4p r== VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ox(/src/openbabel/include/openbabel/math/vector3.h): 273i:ns5t:e ad"note: )'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38 :273 |   note:  expanded from macro 'OB_DEPRECATED_MSG'OB Step #30 - "compile-libfuzzer-undefined-x86_64": _DEPRECATED_MSG (38 | " U s e #vdeecftionre3 :O:BI_sDAEpPpRrEoCxA(T)E Di_nMsStGe(amds.g") )[[ Step #30 - "compile-libfuzzer-undefined-x86_64": d e| pr ^e Step #30 - "compile-libfuzzer-undefined-x86_64": cat/src/openbabel/build/include/openbabel/babelconfig.he:d38(:m38s:g )]]note:  Step #30 - "compile-libfuzzer-undefined-x86_64": expanded from macro 'OB_DEPRECATED_MSG' | Step #30 - "compile-libfuzzer-undefined-x86_64":  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:/src/openbabel/src/builder.cpp189::5643::23 : note: warning: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 564 | 189 | O B _ DEiPfRE C(AbToEnDd_1M S=G=( V"ZUesreo )Is Step #30 - "compile-libfuzzer-undefined-x86_64": A p| pr ^o Step #30 - "compile-libfuzzer-undefined-x86_64": x() /src/openbabel/include/openbabel/math/vector3.hi:n273s:t5e:a d"note: )'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | 38 | O B _ D#EdPeRfEiCnAeT EODB__MDSEGP(RE"CUAsTeE Dv_eMcStGo(rm3s:g:)I s[A[pdperporxe(c)a tiends(tmesagd).]"]) Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": | | ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 566 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 568 | else if (bond3 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp :| 2838: ^11 Step #30 - "compile-libfuzzer-undefined-x86_64": : warning: /src/openbabel/build/include/openbabel/babelconfig.h:'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]38: Step #30 - "compile-libfuzzer-undefined-x86_64": 38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 2838 | if (IsN38e | ar(e _ #nd2e,f i_nee_ nO1B,_DEPREC A_TeEcDo_nMvS)G( Step #30 - "compile-libfuzzer-undefined-x86_64": m s| g) ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [[dep/src/openbabel/include/openbabel/obutil.hr:e189c:a3t:e d(mnote: sg'IsNear' has been explicitly marked deprecated here)] Step #30 - "compile-libfuzzer-undefined-x86_64": ] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG'/src/openbabel/src/builder.cpp Step #30 - "compile-libfuzzer-undefined-x86_64": :570:28 :38 | warning:   'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]  Step #30 - "compile-libfuzzer-undefined-x86_64": #define OB_DEPRECATED_MS G570( | m s g ) [ [de p r e c a t ede(msgl)s]e] Step #30 - "compile-libfuzzer-undefined-x86_64":  i| f ^ Step #30 - "compile-libfuzzer-undefined-x86_64": (bond4 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 572 | else if (bond5 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 660 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | 3039 | O B _ D E PRiEf (IsNear(e_n2, _eC_AnT1, _ecEoDn_vM)SG Step #30 - "compile-libfuzzer-undefined-x86_64": ( | "U ^s Step #30 - "compile-libfuzzer-undefined-x86_64": e vec/src/openbabel/include/openbabel/obutil.h:189:t3o:r 3:note: :I'IsNear' has been explicitly marked deprecated heresA Step #30 - "compile-libfuzzer-undefined-x86_64": ppr ox189( | ) iOnBs_tDeEaPdR.E"CAT)ED Step #30 - "compile-libfuzzer-undefined-x86_64": _ M| SG ^( Step #30 - "compile-libfuzzer-undefined-x86_64": "Use IsAp/src/openbabel/build/include/openbabel/babelconfig.hp:r38o:x38(:) insnote: teexpanded from macro 'OB_DEPRECATED_MSG'ad Step #30 - "compile-libfuzzer-undefined-x86_64": ") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 38 |  /src/openbabel/build/include/openbabel/babelconfig.h : 38 :38#:d efinote: neexpanded from macro 'OB_DEPRECATED_MSG'  Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEP R38E | C A TED _ #dMeSfGi(ne OBm_sDgE)P R[E[CdATeEpDr_eMcSaGt(mesdg()m s[g[)d]e]pr Step #30 - "compile-libfuzzer-undefined-x86_64": e c| a ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ted(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 718 | if (bond1 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 720 | else if (bond2 == VZero) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3252 | if ((*ringit)->PathSize() == 5) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: /src/openbabel/src/forcefield.cpp:3719'GetFirstAtom' is deprecated [-Wdeprecated-declarations]:29:  Step #30 - "compile-libfuzzer-undefined-x86_64": warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3719 | 1089 |  i f m o(lI.sGNeetaFriZresrtoA(tlo_mi(j))- >|G|e tIHsyNbe(a)r;Ze Step #30 - "compile-libfuzzer-undefined-x86_64": r o| (l ^_ Step #30 - "compile-libfuzzer-undefined-x86_64": jk)) {/src/openbabel/include/openbabel/mol.h Step #30 - "compile-libfuzzer-undefined-x86_64": : 287| :5 ^: Step #30 - "compile-libfuzzer-undefined-x86_64": note: /src/openbabel/include/openbabel/obutil.h:'GetFirstAtom' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197:3:  287note: |  'IsNearZero' has been explicitly marked deprecated here  Step #30 - "compile-libfuzzer-undefined-x86_64": OB_DEPREC/src/openbabel/src/mol.cppA:T3274E:D29: Step #30 - "compile-libfuzzer-undefined-x86_64": 197  | |  warning: ^ Step #30 - "compile-libfuzzer-undefined-x86_64": OB'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations]_D Step #30 - "compile-libfuzzer-undefined-x86_64": E/src/openbabel/build/include/openbabel/babelconfig.hP:R37E:C29A:T EDnote: Step #30 - "compile-libfuzzer-undefined-x86_64":  expanded from macro 'OB_DEPRECATED'|  Step #30 - "compile-libfuzzer-undefined-x86_64": ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: 3274 | 37 | # denote: efliexpanded from macro 'OB_DEPRECATED'snee Step #30 - "compile-libfuzzer-undefined-x86_64":  OBi_f D37E | P( R( E* Cr Ai#TndEgeDif ti[)n[-ed> ePOpaBrte_hDcSEaitPzeRedE(]C)]A T= Step #30 - "compile-libfuzzer-undefined-x86_64": E= D | [6 ^[ Step #30 - "compile-libfuzzer-undefined-x86_64": deprec)at Step #30 - "compile-libfuzzer-undefined-x86_64": e d]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3735 | if (IsNearZero(length)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3802 | if (IsNearZero(length)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations]/src/openbabel/src/forcefield.cpp: Step #30 - "compile-libfuzzer-undefined-x86_64": 3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3962 | 3343 | if (IsNearZero(length_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":  /src/openbabel/include/openbabel/obutil.h:197:3:   note:  'IsNearZero' has been explicitly marked deprecated here l Step #30 - "compile-libfuzzer-undefined-x86_64": oopSize = (*ringit)->PathSize() ;197 | Step #30 - "compile-libfuzzer-undefined-x86_64": | OB ^_ Step #30 - "compile-libfuzzer-undefined-x86_64": DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h :| 65: ^5 Step #30 - "compile-libfuzzer-undefined-x86_64": : note: /src/openbabel/build/include/openbabel/babelconfig.h:'PathSize' has been explicitly marked deprecated here37: Step #30 - "compile-libfuzzer-undefined-x86_64": 29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 65 | 37 | O B _#DdEePfRiEnCeA TOEBD__DMESPGR(EC"AUTsEeD S[ize()[ dienpsrteecaadt"ed)]] Step #30 - "compile-libfuzzer-undefined-x86_64":  Step #30 - "compile-libfuzzer-undefined-x86_64": | | ^ Step #30 - "compile-libfuzzer-undefined-x86_64": ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1427 | if (bond1 == VZero) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 452 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 443 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 355 | rotor->SetDelta(delta); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 371 | if (!IsNearZero(pcharge)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 5 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 34 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 589 | gd->GetOriginVector(origin); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | else if (vs[0][0] == '2') Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 51 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 911 | switch(pRD->ReactionType) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 990 | switch(pRD->ReactionType) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #30 - "compile-libfuzzer-undefined-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~ ^~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 9 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | gd->GetOriginVector(origin); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 158 | switch (chirality) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #30 - "compile-libfuzzer-undefined-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #30 - "compile-libfuzzer-undefined-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #30 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": warning: while loop has empty body [-Wempty-body] Step #30 - "compile-libfuzzer-undefined-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #30 - "compile-libfuzzer-undefined-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": put the semicolon on a separate line to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 1523 | OB_D[ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": EPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7[ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": : note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/charges/fromfile.cpp:114:30: warning: object backing the pointer 'name' will be destroyed at the end of the full-expression [-Wdangling-assignment-gsl] Step #30 - "compile-libfuzzer-undefined-x86_64": 114 | char *f = name = (char*)res->GetAtomID( a ).c_str(); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #30 - "compile-libfuzzer-undefined-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~~~~~ ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #30 - "compile-libfuzzer-undefined-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #30 - "compile-libfuzzer-undefined-x86_64": 1237 | static const vector<double> pat = vector<double>(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 9 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #30 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 4 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #30 - "compile-libfuzzer-undefined-x86_64": [ 75%] Built target openbabel Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:111:12: warning: null passed to a callee that requires a non-null argument [-Wnonnull] Step #30 - "compile-libfuzzer-undefined-x86_64": 111 | return nullptr; Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 255 | // / \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 270 | // / \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 285 | // \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 287 | // \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": 310 | // \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg/src/openbabel/test/stereoperceptiontest.cpp:)432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #30 - "compile-libfuzzer-undefined-x86_64": [[d 432 | e preca ted(msg)]]// \  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64":   Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->G/src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 102 | switch (units.at(i).type) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": etCoordinates()), 0.0, 1.0));  Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #30 - "compile-libfuzzer-undefined-x86_64": 132 | switch (units.at(i).type) { Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~ Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Linking CXX executable ../bin/obabel Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Linking CXX executable ../bin/roundtrip Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #30 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 7 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Built target fuzz_obconversion_smiles Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Built target fuzz_obconversion_sdf Step #30 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Built target roundtrip Step #30 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Built target obabel Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #30 - "compile-libfuzzer-undefined-x86_64": [ 99%] Built target fuzz_convert Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 190 | x = m2.Get( i, j ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": 17 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #30 - "compile-libfuzzer-undefined-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #30 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #30 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #30 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #30 - "compile-libfuzzer-undefined-x86_64": 24 warnings generated. Step #30 - "compile-libfuzzer-undefined-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #30 - "compile-libfuzzer-undefined-x86_64": [100%] Built target test_runner Step #30 - "compile-libfuzzer-undefined-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-undefined-x86_64/ Finished Step #30 - "compile-libfuzzer-undefined-x86_64" Starting Step #31 - "build-check-libfuzzer-undefined-x86_64" Step #31 - "build-check-libfuzzer-undefined-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #31 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp7selcklj/fuzz_obconversion_sdf Step #31 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp7selcklj/fuzz_obconversion_smiles Step #31 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmp7selcklj/fuzz_convert Finished Step #31 - "build-check-libfuzzer-undefined-x86_64" Starting Step #32 Step #32: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #32 Starting Step #33 Step #33: Already have image: gcr.io/oss-fuzz/openbabel Step #33: adding: fuzz_convert (deflated 71%) Step #33: adding: fuzz_obconversion_sdf (deflated 71%) Step #33: adding: fuzz_obconversion_smiles (deflated 71%) Step #33: adding: llvm-symbolizer (deflated 65%) Finished Step #33 Starting Step #34 Step #34: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #34: % Total % Received % Xferd Average Speed Time Time Time Current Step #34: Dload Upload Total Spent Left Speed Step #34: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 647 --:--:-- --:--:-- --:--:-- 647 Finished Step #34 Starting Step #35 Step #35: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #35: % Total % Received % Xferd Average Speed Time Time Time Current Step #35: Dload Upload Total Spent Left Speed Step #35: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 41.1M 0 0 100 41.1M 0 96.7M --:--:-- --:--:-- --:--:-- 96.8M Finished Step #35 Starting Step #36 Step #36: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #36: % Total % Received % Xferd Average Speed Time Time Time Current Step #36: Dload Upload Total Spent Left Speed Step #36: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 217 --:--:-- --:--:-- --:--:-- 217 Finished Step #36 Starting Step #37 Step #37: Already have image (with digest): gcr.io/cloud-builders/curl Step #37: % Total % Received % Xferd Average Speed Time Time Time Current Step #37: Dload Upload Total Spent Left Speed Step #37: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 36 0 0 100 36 0 169 --:--:-- --:--:-- --:--:-- 169 Finished Step #37 Starting Step #38 Step #38: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #38 PUSH DONE