starting build "d1e15eaf-4cff-429e-a942-f07afb54a6e1" FETCHSOURCE BUILD Starting Step #0 Step #0: Pulling image: gcr.io/oss-fuzz-base/base-runner Step #0: Using default tag: latest Step #0: latest: Pulling from oss-fuzz-base/base-runner Step #0: b549f31133a9: Pulling fs layer Step #0: a977fd1d1d2c: Pulling fs layer Step #0: b7af597d0683: Pulling fs layer Step #0: 13e3034c244d: Pulling fs layer Step #0: dec64d51f794: Pulling fs layer Step #0: e31f3b260b9e: Pulling fs layer Step #0: 367f9bb09834: Pulling fs layer Step #0: dec64d51f794: Waiting Step #0: e31f3b260b9e: Waiting Step #0: 5b25d2c94427: Pulling fs layer Step #0: d2a50f9fb1f3: Pulling fs layer Step #0: 8632b0bd8e7d: Pulling fs layer Step #0: 5368468cae7f: Pulling fs layer Step #0: 3c2efcf61031: Pulling fs layer Step #0: ac5a534aec8b: Pulling fs layer Step #0: b7e426295cd7: Pulling fs layer Step #0: a3f08180fccf: Pulling fs layer Step #0: d948d546ccc6: Pulling fs layer Step #0: 0ad7fe872fbd: Pulling fs layer Step #0: 6a857bbda8a0: Pulling fs layer Step #0: a70462462a24: Pulling fs layer Step #0: 2a0c7f3b0701: Pulling fs layer Step #0: 5b25d2c94427: Waiting Step #0: d2a50f9fb1f3: Waiting Step #0: 8632b0bd8e7d: Waiting Step #0: b7e426295cd7: Waiting Step #0: 13e3034c244d: Waiting Step #0: d948d546ccc6: Waiting Step #0: a3f08180fccf: Waiting Step #0: 0ad7fe872fbd: Waiting Step #0: 5368468cae7f: Waiting Step #0: 6a857bbda8a0: Waiting Step #0: a70462462a24: Waiting Step #0: 2a0c7f3b0701: Waiting Step #0: 3c2efcf61031: Waiting Step #0: ac5a534aec8b: Waiting Step #0: 367f9bb09834: Waiting Step #0: b7af597d0683: Verifying Checksum Step #0: b7af597d0683: Download complete Step #0: 13e3034c244d: Verifying Checksum Step #0: 13e3034c244d: Download complete Step #0: b549f31133a9: Verifying Checksum Step #0: b549f31133a9: Download complete Step #0: dec64d51f794: Verifying Checksum Step #0: dec64d51f794: Download complete Step #0: e31f3b260b9e: Verifying Checksum Step #0: e31f3b260b9e: Download complete Step #0: 5b25d2c94427: Verifying Checksum Step #0: 5b25d2c94427: Download complete Step #0: d2a50f9fb1f3: Verifying Checksum Step #0: d2a50f9fb1f3: Download complete Step #0: a977fd1d1d2c: Verifying Checksum Step #0: a977fd1d1d2c: Download complete Step #0: 8632b0bd8e7d: Download complete Step #0: 3c2efcf61031: Verifying Checksum Step #0: 3c2efcf61031: Download complete Step #0: 367f9bb09834: Verifying Checksum Step #0: 367f9bb09834: Download complete Step #0: 5368468cae7f: Verifying Checksum Step #0: 5368468cae7f: Download complete Step #0: b7e426295cd7: Verifying Checksum Step #0: b7e426295cd7: Download complete Step #0: a3f08180fccf: Verifying Checksum Step #0: a3f08180fccf: Download complete Step #0: b549f31133a9: Pull complete Step #0: d948d546ccc6: Verifying Checksum Step #0: d948d546ccc6: Download complete Step #0: 0ad7fe872fbd: Verifying Checksum Step #0: 0ad7fe872fbd: Download complete Step #0: 6a857bbda8a0: Verifying Checksum Step #0: 6a857bbda8a0: Download complete Step #0: a70462462a24: Verifying Checksum Step #0: a70462462a24: Download complete Step #0: 2a0c7f3b0701: Verifying Checksum Step #0: 2a0c7f3b0701: Download complete Step #0: ac5a534aec8b: Verifying Checksum Step #0: ac5a534aec8b: Download complete Step #0: a977fd1d1d2c: Pull complete Step #0: b7af597d0683: Pull complete Step #0: 13e3034c244d: Pull complete Step #0: dec64d51f794: Pull complete Step #0: e31f3b260b9e: Pull complete Step #0: 367f9bb09834: Pull complete Step #0: 5b25d2c94427: Pull complete Step #0: d2a50f9fb1f3: Pull complete Step #0: 8632b0bd8e7d: Pull complete Step #0: 5368468cae7f: Pull complete Step #0: 3c2efcf61031: Pull complete Step #0: ac5a534aec8b: Pull complete Step #0: b7e426295cd7: Pull complete Step #0: a3f08180fccf: Pull complete Step #0: d948d546ccc6: Pull complete Step #0: 0ad7fe872fbd: Pull complete Step #0: 6a857bbda8a0: Pull complete Step #0: a70462462a24: Pull complete Step #0: 2a0c7f3b0701: Pull complete Step #0: Digest: sha256:44d0c2654e5beb6475c2a8205a6abe1b890292906574ed74740db7d2400248f9 Step #0: Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-runner:latest Step #0: gcr.io/oss-fuzz-base/base-runner:latest Finished Step #0 Starting Step #1 Step #1: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #1: Copying gs://oss-fuzz-coverage/openbabel/textcov_reports/20240907/fuzz_obconversion_sdf.covreport... Step #1: / [0/2 files][ 0.0 B/ 1003 KiB] 0% Done Copying gs://oss-fuzz-coverage/openbabel/textcov_reports/20240907/fuzz_obconversion_smiles.covreport... Step #1: / [0/2 files][ 0.0 B/ 1003 KiB] 0% Done / [1/2 files][551.9 KiB/ 1003 KiB] 54% Done / [2/2 files][ 1003 KiB/ 1003 KiB] 100% Done Step #1: Operation completed over 2 objects/1003.5 KiB. Finished Step #1 Starting Step #2 Step #2: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Step #2: total 1004 Step #2: -rw-r--r-- 1 root root 565116 Sep 7 10:03 fuzz_obconversion_sdf.covreport Step #2: -rw-r--r-- 1 root root 462442 Sep 7 10:03 fuzz_obconversion_smiles.covreport Finished Step #2 Starting Step #3 Step #3: Already have image (with digest): gcr.io/cloud-builders/git Step #3: Cloning into 'oss-fuzz'... Finished Step #3 Starting Step #4 Step #4: Already have image (with digest): gcr.io/cloud-builders/docker Step #4: Sending build context to Docker daemon 5.12kB Step #4: Step 1/5 : FROM gcr.io/oss-fuzz-base/base-builder Step #4: latest: Pulling from oss-fuzz-base/base-builder Step #4: b549f31133a9: Already exists Step #4: a977fd1d1d2c: Already exists Step #4: b7af597d0683: Already exists Step #4: 0ad851ab79a7: Pulling fs layer Step #4: 32d6a845953a: Pulling fs layer Step #4: 13291e1f0083: Pulling fs layer Step #4: 12c3fa064ec9: Pulling fs layer Step #4: 5bf877a30e45: Pulling fs layer Step #4: 12c76ab55805: Pulling fs layer Step #4: bcee33c0f2c5: Pulling fs layer Step #4: 00901539164e: Pulling fs layer Step #4: 652e81a6c3ce: Pulling fs layer Step #4: 2bd7184f3186: Pulling fs layer Step #4: 6ef14a282d78: Pulling fs layer Step #4: f0b30797ba63: Pulling fs layer Step #4: c255474facb8: Pulling fs layer Step #4: 2037056aed43: Pulling fs layer Step #4: 4ea8cc67e5b1: Pulling fs layer Step #4: 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88ea93146e84: Verifying Checksum Step #4: 88ea93146e84: Download complete Step #4: 912a9adfcdcb: Download complete Step #4: 7ec1d093c1da: Verifying Checksum Step #4: 7ec1d093c1da: Download complete Step #4: 8c8a3977119b: Verifying Checksum Step #4: 8c8a3977119b: Download complete Step #4: 12c3fa064ec9: Verifying Checksum Step #4: 12c3fa064ec9: Download complete Step #4: 7e3654bd47ef: Verifying Checksum Step #4: 7e3654bd47ef: Download complete Step #4: dcd9de8bf193: Verifying Checksum Step #4: dcd9de8bf193: Download complete Step #4: 390d9580ed9e: Download complete Step #4: f97e0fb3e819: Download complete Step #4: 12c3fa064ec9: Pull complete Step #4: 5bf877a30e45: Pull complete Step #4: 12c76ab55805: Pull complete Step #4: bcee33c0f2c5: Pull complete Step #4: 00901539164e: Pull complete Step #4: 652e81a6c3ce: Pull complete Step #4: 2bd7184f3186: Pull complete Step #4: 6ef14a282d78: Pull complete Step #4: f0b30797ba63: Pull complete Step #4: c255474facb8: Pull complete Step #4: 2037056aed43: Pull complete Step #4: 4ea8cc67e5b1: Pull complete Step #4: 1593bc33732e: Pull complete Step #4: fac862d0d976: Pull complete Step #4: 8a5f772dc665: Pull complete Step #4: a682fa05afee: Pull complete Step #4: 50ae31b489cf: Pull complete Step #4: bcfe6fcb5c6a: Pull complete Step #4: 88ea93146e84: Pull complete Step #4: 912a9adfcdcb: Pull complete Step #4: 7ec1d093c1da: Pull complete Step #4: 8c8a3977119b: Pull complete Step #4: 7e3654bd47ef: Pull complete Step #4: 390d9580ed9e: Pull complete Step #4: dcd9de8bf193: Pull complete Step #4: f97e0fb3e819: Pull complete Step #4: Digest: sha256:3483860ed8c7c32d28b30449c48c00eb12ea78cd2eb8cc9ab0af89e4d3a0f4b7 Step #4: Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-builder:latest Step #4: ---> 0723cd9b4673 Step #4: Step 2/5 : RUN apt-get update && apt install -y cmake Step #4: ---> Running in 9f6be4bde1ce Step #4: Hit:1 http://security.ubuntu.com/ubuntu focal-security InRelease Step #4: Hit:2 http://archive.ubuntu.com/ubuntu focal InRelease Step #4: Get:3 http://archive.ubuntu.com/ubuntu focal-updates InRelease [128 kB] Step #4: Hit:4 http://archive.ubuntu.com/ubuntu focal-backports InRelease Step #4: Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [4399 kB] Step #4: Fetched 4527 kB in 2s (2406 kB/s) Step #4: Reading package lists... Step #4:  Step #4: WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Step #4: Step #4: Reading package lists... Step #4: Building dependency tree... Step #4: Reading state information... Step #4: The following additional packages will be installed: Step #4: cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #4: Suggested packages: Step #4: cmake-doc ninja-build lrzip Step #4: The following NEW packages will be installed: Step #4: cmake cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #4: 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Step #4: Need to get 15.0 MB of archives. Step #4: After this operation, 65.0 MB of additional disk space will be used. Step #4: Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libicu66 amd64 66.1-2ubuntu2.1 [8515 kB] Step #4: Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2 amd64 2.9.10+dfsg-5ubuntu0.20.04.7 [640 kB] Step #4: Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1 amd64 1.34.2-1ubuntu1.5 [80.9 kB] Step #4: Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake-data all 3.16.3-1ubuntu1.20.04.1 [1613 kB] Step #4: Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libarchive13 amd64 3.4.0-2ubuntu1.2 [327 kB] Step #4: Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] Step #4: Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] Step #4: Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake amd64 3.16.3-1ubuntu1.20.04.1 [3668 kB] Step #4: debconf: delaying package configuration, since apt-utils is not installed Step #4: Fetched 15.0 MB in 2s (8319 kB/s) Step #4: Selecting previously unselected package libicu66:amd64. Step #4: (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17384 files and directories currently installed.) Step #4: Preparing to unpack .../0-libicu66_66.1-2ubuntu2.1_amd64.deb ... Step #4: Unpacking libicu66:amd64 (66.1-2ubuntu2.1) ... Step #4: Selecting previously unselected package libxml2:amd64. Step #4: Preparing to unpack .../1-libxml2_2.9.10+dfsg-5ubuntu0.20.04.7_amd64.deb ... Step #4: Unpacking libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.7) ... Step #4: Selecting previously unselected package libuv1:amd64. Step #4: Preparing to unpack .../2-libuv1_1.34.2-1ubuntu1.5_amd64.deb ... Step #4: Unpacking libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #4: Selecting previously unselected package cmake-data. Step #4: Preparing to unpack .../3-cmake-data_3.16.3-1ubuntu1.20.04.1_all.deb ... Step #4: Unpacking cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #4: Selecting previously unselected package libarchive13:amd64. Step #4: Preparing to unpack .../4-libarchive13_3.4.0-2ubuntu1.2_amd64.deb ... Step #4: Unpacking libarchive13:amd64 (3.4.0-2ubuntu1.2) ... Step #4: Selecting previously unselected package libjsoncpp1:amd64. Step #4: Preparing to unpack .../5-libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... Step #4: Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #4: Selecting previously unselected package librhash0:amd64. Step #4: Preparing to unpack .../6-librhash0_1.3.9-1_amd64.deb ... Step #4: Unpacking librhash0:amd64 (1.3.9-1) ... Step #4: Selecting previously unselected package cmake. Step #4: Preparing to unpack .../7-cmake_3.16.3-1ubuntu1.20.04.1_amd64.deb ... Step #4: Unpacking cmake (3.16.3-1ubuntu1.20.04.1) ... Step #4: Setting up libicu66:amd64 (66.1-2ubuntu2.1) ... Step #4: Setting up libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #4: Setting up librhash0:amd64 (1.3.9-1) ... Step #4: Setting up cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #4: Setting up libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.7) ... Step #4: Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #4: Setting up libarchive13:amd64 (3.4.0-2ubuntu1.2) ... Step #4: Setting up cmake (3.16.3-1ubuntu1.20.04.1) ... Step #4: Processing triggers for libc-bin (2.31-0ubuntu9.16) ... Step #4: Removing intermediate container 9f6be4bde1ce Step #4: ---> 9a976bc2adf0 Step #4: Step 3/5 : RUN git clone --depth 1 https://github.com/openbabel/openbabel.git Step #4: ---> Running in 3fc021ba735b Step #4: Cloning into 'openbabel'... 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Step #4: Removing intermediate container 3fc021ba735b Step #4: ---> d49d324e126d Step #4: Step 4/5 : COPY build.sh $SRC Step #4: ---> 5c7513d48cd9 Step #4: Step 5/5 : WORKDIR $SRC/openbabel Step #4: ---> Running in cacef7465b7a Step #4: Removing intermediate container cacef7465b7a Step #4: ---> 1dc65928cf32 Step #4: Successfully built 1dc65928cf32 Step #4: Successfully tagged gcr.io/oss-fuzz/openbabel:latest Finished Step #4 Starting Step #5 - "srcmap" Step #5 - "srcmap": Already have image: gcr.io/oss-fuzz/openbabel Step #5 - "srcmap": ++ tempfile Step #5 - "srcmap": + SRCMAP=/tmp/fileL6Z4XO Step #5 - "srcmap": + echo '{}' Step #5 - "srcmap": + PATHS_TO_SCAN=/src Step #5 - "srcmap": + [[ c++ == \g\o ]] Step #5 - "srcmap": ++ find /src -name .git -type d Step #5 - "srcmap": + for DOT_GIT_DIR in $(find $PATHS_TO_SCAN -name ".git" -type d) Step #5 - "srcmap": ++ dirname /src/openbabel/.git Step #5 - "srcmap": + GIT_DIR=/src/openbabel Step #5 - "srcmap": + cd /src/openbabel Step #5 - "srcmap": ++ git config --get remote.origin.url Step #5 - "srcmap": + GIT_URL=https://github.com/openbabel/openbabel.git Step #5 - "srcmap": ++ git rev-parse HEAD Step #5 - "srcmap": + GIT_REV=7acf50c9d73f8016e15eb2a45ce74c8909152883 Step #5 - "srcmap": + jq_inplace /tmp/fileL6Z4XO '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "7acf50c9d73f8016e15eb2a45ce74c8909152883" }' Step #5 - "srcmap": ++ tempfile Step #5 - "srcmap": + F=/tmp/filezZN7Ga Step #5 - "srcmap": + cat /tmp/fileL6Z4XO Step #5 - "srcmap": + jq '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "7acf50c9d73f8016e15eb2a45ce74c8909152883" }' Step #5 - "srcmap": + mv /tmp/filezZN7Ga /tmp/fileL6Z4XO Step #5 - "srcmap": ++ find /src -name .svn -type d Step #5 - "srcmap": ++ find /src -name .hg -type d Step #5 - "srcmap": + '[' '' '!=' '' ']' Step #5 - "srcmap": + cat /tmp/fileL6Z4XO Step #5 - "srcmap": + rm /tmp/fileL6Z4XO Step #5 - "srcmap": { Step #5 - "srcmap": "/src/openbabel": { Step #5 - "srcmap": "type": "git", Step #5 - "srcmap": "url": "https://github.com/openbabel/openbabel.git", Step #5 - "srcmap": "rev": "7acf50c9d73f8016e15eb2a45ce74c8909152883" Step #5 - "srcmap": } Step #5 - "srcmap": } Finished Step #5 - "srcmap" Starting Step #6 - "compile-libfuzzer-introspector-x86_64" Step #6 - "compile-libfuzzer-introspector-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #6 - "compile-libfuzzer-introspector-x86_64": --------------------------------------------------------------- Step #6 - "compile-libfuzzer-introspector-x86_64": vm.mmap_rnd_bits = 28 Step #6 - "compile-libfuzzer-introspector-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #6 - "compile-libfuzzer-introspector-x86_64": --------------------------------------------------------------- Step #6 - "compile-libfuzzer-introspector-x86_64": CC=clang Step #6 - "compile-libfuzzer-introspector-x86_64": CXX=clang++ Step #6 - "compile-libfuzzer-introspector-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -O0 -flto -fno-inline-functions -fuse-ld=gold -Wno-unused-command-line-argument -fsanitize=fuzzer-no-link -g Step #6 - "compile-libfuzzer-introspector-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -O0 -flto -fno-inline-functions -fuse-ld=gold -Wno-unused-command-line-argument -fsanitize=fuzzer-no-link -stdlib=libc++ -g Step #6 - "compile-libfuzzer-introspector-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=introspector -Cdebuginfo=1 -Cforce-frame-pointers Step #6 - "compile-libfuzzer-introspector-x86_64": --------------------------------------------------------------- Step #6 - "compile-libfuzzer-introspector-x86_64": + mkdir build Step #6 - "compile-libfuzzer-introspector-x86_64": + cd build Step #6 - "compile-libfuzzer-introspector-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #6 - "compile-libfuzzer-introspector-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #6 - "compile-libfuzzer-introspector-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #6 - "compile-libfuzzer-introspector-x86_64": CMake. Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #6 - "compile-libfuzzer-introspector-x86_64": CMake that the project does not need compatibility with older versions. Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": -- The C compiler identification is Clang 18.0.0 Step #6 - "compile-libfuzzer-introspector-x86_64": -- The CXX compiler identification is Clang 18.0.0 Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting C compiler ABI info Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting C compiler ABI info - done Step #6 - "compile-libfuzzer-introspector-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting C compile features Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting C compile features - done Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting CXX compiler ABI info Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting CXX compiler ABI info - done Step #6 - "compile-libfuzzer-introspector-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting CXX compile features Step #6 - "compile-libfuzzer-introspector-x86_64": -- Detecting CXX compile features - done Step #6 - "compile-libfuzzer-introspector-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #6 - "compile-libfuzzer-introspector-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #6 - "compile-libfuzzer-introspector-x86_64": of CMake. Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #6 - "compile-libfuzzer-introspector-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #6 - "compile-libfuzzer-introspector-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #6 - "compile-libfuzzer-introspector-x86_64": behavior and not rely on setting a policy to OLD. Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": -- Using included inchi library. Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #6 - "compile-libfuzzer-introspector-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #6 - "compile-libfuzzer-introspector-x86_64": libxml2 not found - disabling CML support! Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for conio.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for conio.h - not found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for sys/time.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for sys/time.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for time.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for time.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for strings.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for strings.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for rpc/xdr.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for rpc/xdr.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for regex.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for regex.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for C++ include sstream Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for C++ include sstream - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for rint Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for rint - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for snprintf Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for snprintf - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for sranddev Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for sranddev - not found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for strcasecmp Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for strcasecmp - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for strncasecmp Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for strncasecmp - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for dlopen in dl Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for dlopen in dl - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for sys/types.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for sys/types.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for stdint.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for stdint.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for stddef.h Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for stddef.h - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- Check size of clock_t Step #6 - "compile-libfuzzer-introspector-x86_64": -- Check size of clock_t - done Step #6 - "compile-libfuzzer-introspector-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #6 - "compile-libfuzzer-introspector-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #6 - "compile-libfuzzer-introspector-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #6 - "compile-libfuzzer-introspector-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-1.1.0. Step #6 - "compile-libfuzzer-introspector-x86_64": -- JSON formats will be supported. Using RapidJSON 1.1.0 at /src/openbabel/external/rapidjson-1.1.0/include Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #6 - "compile-libfuzzer-introspector-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #6 - "compile-libfuzzer-introspector-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #6 - "compile-libfuzzer-introspector-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #6 - "compile-libfuzzer-introspector-x86_64": -- Found Threads: TRUE Step #6 - "compile-libfuzzer-introspector-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for getopt Step #6 - "compile-libfuzzer-introspector-x86_64": -- Looking for getopt - found Step #6 - "compile-libfuzzer-introspector-x86_64": -- GUI will not be built Step #6 - "compile-libfuzzer-introspector-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #6 - "compile-libfuzzer-introspector-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #6 - "compile-libfuzzer-introspector-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #6 - "compile-libfuzzer-introspector-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64": Call Stack (most recent call first): Step #6 - "compile-libfuzzer-introspector-x86_64": test/CMakeLists.txt:233 (include) Step #6 - "compile-libfuzzer-introspector-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": -- Found PythonInterp: /usr/local/bin/python3.8 (found version "3.8.3") Step #6 - "compile-libfuzzer-introspector-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #6 - "compile-libfuzzer-introspector-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #6 - "compile-libfuzzer-introspector-x86_64": CMake. Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #6 - "compile-libfuzzer-introspector-x86_64": CMake that the project does not need compatibility with older versions. Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": -- Configuring done (4.3s) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Generating done (0.1s) Step #6 - "compile-libfuzzer-introspector-x86_64": -- Build files have been written to: /src/openbabel/build Step #6 - "compile-libfuzzer-introspector-x86_64": ++ nproc Step #6 - "compile-libfuzzer-introspector-x86_64": + make -j 32 Step #6 - "compile-libfuzzer-introspector-x86_64": [ 0%] Generating atomtyp.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 0%] Generating bondtyp.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 1%] Generating phmodeldata.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 1%] Generating resdata.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 1%] Generating torlib.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 1%] Generating types.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 2%] Generating atomizationenergies.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 2%] Generating spacegroups.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 2%] Generating ringtyp.h Step #6 - "compile-libfuzzer-introspector-x86_64": [ 2%] Built target data_headers Step #6 - "compile-libfuzzer-introspector-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 118 | if (_ival) delete [] _ival; Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 118 | if (_ival) delete [] _ival; Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 82 | _ival=nullptr; Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 118 | if (_ival) delete [] _ival; Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 118 | if (_ival) delete [] _ival; Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 297 | if (!IsNearZero(val[2])) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 124 | if (IsNearZero(v3.length_2())) { //[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": too small to normalize, move the atoms apart Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 118 | if (_ival) delete [] _ival; Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 118 | if (_ival) delete [] _ival; Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #6 - "compile-libfuzzer-introspector-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 1523 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 1539 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 1572 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++/src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]) Step #6 - "compile-libfuzzer-introspector-x86_64": { // 310 | F or e ac h r iotf (bond2 == VZero or pos|it|i ovn1 Step #6 - "compile-libfuzzer-introspector-x86_64": = | = ^V Step #6 - "compile-libfuzzer-introspector-x86_64": Zero) {/src/openbabel/include/openbabel/rotor.h: Step #6 - "compile-libfuzzer-introspector-x86_64": 449 :| 5 ^ Step #6 - "compile-libfuzzer-introspector-x86_64": : note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h :273:4495 | :   note: OB'operator==' has been explicitly marked deprecated here_D Step #6 - "compile-libfuzzer-introspector-x86_64": E PRE273C | A T E D _OMBS_GD("ESPeReE CGAeTtETDo_rMsSiGo(n"VUasleu esv(e)c"t)or Step #6 - "compile-libfuzzer-introspector-x86_64": 3 :| :I ^sA Step #6 - "compile-libfuzzer-introspector-x86_64": pprox/src/openbabel/build/include/openbabel/babelconfig.h(:)38 :i38n:s teanote: d.expanded from macro 'OB_DEPRECATED_MSG'") Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": | 38 | ^ Step #6 - "compile-libfuzzer-introspector-x86_64":   #d/src/openbabel/build/include/openbabel/babelconfig.he:f38i:n38e: OB_note: DEPexpanded from macro 'OB_DEPRECATED_MSG'RE Step #6 - "compile-libfuzzer-introspector-x86_64": C AT38E | D_ M S #definGe( mOsBg_)D E[P[RdEeCpArTeEcDa_tMeSdG((msg) [[deprecatmesdg()m]s]g) Step #6 - "compile-libfuzzer-introspector-x86_64": ] ]|  Step #6 - "compile-libfuzzer-introspector-x86_64": ^ Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 359 | if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | /src/openbabel/src/forcefield.cpp OB_:D1444E:P8R:E CATwarning: ED_M'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations]SG Step #6 - "compile-libfuzzer-introspector-x86_64": ( "Use1444 | v e c t orrl3.:S:eItsFAipxpArtooxm(s)( fiinxsetde)a;d. Step #6 - "compile-libfuzzer-introspector-x86_64": | ") ^ Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:633/src/openbabel/build/include/openbabel/babelconfig.h::538:: 38:note: 'SetFixAtoms' has been explicitly marked deprecated herenote: Step #6 - "compile-libfuzzer-introspector-x86_64":  expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 633 | 38 | O B _ D#EdPeRfEiCnAeT EODB__MDSEGP(R"ESCeAeT ESDe_tMFSiGx(emdsBonds(g))" )[[ Step #6 - "compile-libfuzzer-introspector-x86_64": d e| pr ^e Step #6 - "compile-libfuzzer-introspector-x86_64": cated(/src/openbabel/build/include/openbabel/babelconfig.hm:s38g:)38]:]  Step #6 - "compile-libfuzzer-introspector-x86_64":  note: | expanded from macro 'OB_DEPRECATED_MSG' ^ Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64":  38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 361 | else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here/src/openbabel/src/forcefield.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": : 1457:32273: |   warning: OB'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]_DE Step #6 - "compile-libfuzzer-introspector-x86_64": P REC1457A | T E D _ M S G (c"oUsmeb ivneacttioorn3s: :*I=s Arpoptroorx-(>)G eitnRsetseoaldu.t"i)on Step #6 - "compile-libfuzzer-introspector-x86_64": ( )| .s ^i Step #6 - "compile-libfuzzer-introspector-x86_64": ze();/src/openbabel/build/include/openbabel/babelconfig.h: Step #6 - "compile-libfuzzer-introspector-x86_64": 38:38 :|  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h :44938: | 5 :  #note: de'GetResolution' has been explicitly marked deprecated herefi Step #6 - "compile-libfuzzer-introspector-x86_64": n e O449B | _DEPR EOCBA_TDEEDP_RMESCGA(TmEsD_gM)S G[(["dSeeper eGceatted(Tmosrgs)i]o]nV Step #6 - "compile-libfuzzer-introspector-x86_64": a l| ue ^s( Step #6 - "compile-libfuzzer-introspector-x86_64": )") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1635 | combinations */src/openbabel/src/builder.cpp:430:23=: warning:  'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 430 | if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 432 | else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 434 | else if (bond3 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": rotor->GetResolution().size(); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 450 | if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.")/src/openbabel/src/forcefield.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": : 1685| :43 ^: Step #6 - "compile-libfuzzer-introspector-x86_64": warning: /src/openbabel/build/include/openbabel/babelconfig.h:38'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]:38 Step #6 - "compile-libfuzzer-introspector-x86_64": : 1685note:  | expanded from macro 'OB_DEPRECATED_MSG'  Step #6 - "compile-libfuzzer-introspector-x86_64": f38o | r ( u n#sdiegfniende iOnBt _jD E=P R0E;C AjT EgG)e t[R[edseoplruetciaotned(msg())].]si Step #6 - "compile-libfuzzer-introspector-x86_64": z e| () ^; Step #6 - "compile-libfuzzer-introspector-x86_64": j++) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]]/src/openbabel/src/builder.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": | :452 ^: Step #6 - "compile-libfuzzer-introspector-x86_64": 28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 452 | else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED/src/openbabel/src/forcefield.cpp_M:S1712G:(43m:s g) [warning: [de'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]pr Step #6 - "compile-libfuzzer-introspector-x86_64": e cat1712 | e d ( mfsogr) ](]un Step #6 - "compile-libfuzzer-introspector-x86_64": s i| gn ^e Step #6 - "compile-libfuzzer-introspector-x86_64": d int j = 0; j < rotor->GetResolution().size(); j++) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | /src/openbabel/src/builder.cpp : 454#d:e28f:i ne warning: OB_'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]DE Step #6 - "compile-libfuzzer-introspector-x86_64": P REC454A | T E D _ M S G ( m s g ) e[l[sdee pirfe c(abtoendd(3m s=g=) ]V]Ze Step #6 - "compile-libfuzzer-introspector-x86_64": r o| ) ^ Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRE/src/openbabel/src/builder.cppCA:T469E:D23_:M SG(mwarning: sg)'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] [ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 469 | d e p r e c a t e di(fm s(gb)o]n]d1 Step #6 - "compile-libfuzzer-introspector-x86_64": =| = ^V Step #6 - "compile-libfuzzer-introspector-x86_64": Zero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MS/src/openbabel/src/forcefield.cppG:("1720U:s13e v:e ctowarning: r3:'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]:I Step #6 - "compile-libfuzzer-introspector-x86_64": sAppr o1720x | ( ) i n s t e aidf. "()Is Step #6 - "compile-libfuzzer-introspector-x86_64": N e| ar ^( Step #6 - "compile-libfuzzer-introspector-x86_64": wor/src/openbabel/build/include/openbabel/babelconfig.h:38:38st:E , bnote: esexpanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #detE, 1.0e-3))fine OB Step #6 - "compile-libfuzzer-introspector-x86_64": _| DEP ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3:RECATED_MSG(msg) note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRE [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 471 | CATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1721 | e weight = 1 / rlseotor i->Gf e(tbResolution().size(ond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 449 | OB_DE") Step #6 - "compile-libfuzzer-introspector-x86_64": | P ^R Step #6 - "compile-libfuzzer-introspector-x86_64": EC/src/openbabel/build/include/openbabel/babelconfig.h:ATED_38:38MS:G(" note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": See 38 | #dGetTorsionValuesefin(e OB)")_ Step #6 - "compile-libfuzzer-introspector-x86_64": DE | PR ^ Step #6 - "compile-libfuzzer-introspector-x86_64": ECA/src/openbabel/build/include/openbabel/babelconfig.hTED:38:38_MS: G(msnote: g)expanded from macro 'OB_DEPRECATED_MSG' [ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 38 | deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:473 | else if (bond3 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #defi1761ne: 45O: B_DEwarning: PRE'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]CA Step #6 - "compile-libfuzzer-introspector-x86_64": T ED_MSG(1761 | msg) [[d efporre (unsicatedgn(mseg)d]] Step #6 - "compile-libfuzzer-introspector-x86_64": in t | j ^= Step #6 - "compile-libfuzzer-introspector-x86_64": 0/src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]; j < rotor->GetResolution().size(); j++) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": 494 | if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 496 | else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 498 | else if (bond3 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 514 | if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 516 | else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 518 | else if (bond3 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 520 | else if (bond4 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 533 | if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 535 | else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 537 | else if (bond3 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 539 | else if (bond4 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mol.cpp:2786:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 2786 | if (atom->GetVector() != VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 278 | OB_DEPRECATED_MSG("Use vect/src/openbabel/src/builder.cppor3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": :564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 564 | if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #d/src/openbabel/src/mol.cppefin:2801:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": e OB_DEPRECATED_MS 2801 | G(m sg) [[depre if (!hasX && !Iscated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": NearZero | (atom->x ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp())) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": | : ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 566:/src/openbabel/src/mol.cpp:2803:23: warning: 28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 566 | else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 2420 | if (IsN/src/openbabel/src/builder.cppe:a568r:Z28e:r o(swarning: cal'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]e) Step #6 - "compile-libfuzzer-introspector-x86_64": ) 568{ |  Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":   /src/openbabel/include/openbabel/obutil.h :e197l:s3e: ifnote: ('IsNearZero' has been explicitly marked deprecated herebo Step #6 - "compile-libfuzzer-introspector-x86_64": nd3 =197= | V ZOeBr_oD)EP Step #6 - "compile-libfuzzer-introspector-x86_64": R E| CA ^T Step #6 - "compile-libfuzzer-introspector-x86_64": ED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^/src/openbabel/include/openbabel/math/vector3.h Step #6 - "compile-libfuzzer-introspector-x86_64": :273:5: /src/openbabel/build/include/openbabel/babelconfig.h:37note: :29'operator==' has been explicitly marked deprecated here: Step #6 - "compile-libfuzzer-introspector-x86_64": note:  expanded from macro 'OB_DEPRECATED'273 | Step #6 - "compile-libfuzzer-introspector-x86_64": 37'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 2803 | if (!hasY && !IsNearZero(atom->y())) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mol.cpp:2824:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 2824 | if (!hasX && !IsNearZero(atom->x())) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: OB_DEPRECATED_M'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 2826 | iSG("Use vector3::If (!hasYsApprox( && !IsNearZe) instead.ro(atom->y())") Step #6 - "compile-libfuzzer-introspector-x86_64": | ) Step #6 - "compile-libfuzzer-introspector-x86_64": | ^ ^ Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3/src/openbabel/build/include/openbabel/babelconfig.h:38:38:: note: 'IsNearZero' has been explicitly marked deprecated herenote: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64":  Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_ 38 | D EP#RdEe/src/openbabel/src/forcefield.cpp:f2539i:11: warning: ne'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]CATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 2828 | if (!hasZ && Step #6 - "compile-libfuzzer-introspector-x86_64": OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  !IsNearZero(atom->z())'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | 570 | # d e f i n e OeBl_sDeE PiRfE C(AbToEnDd 4[ [=d=e pVrZeecraot)ed Step #6 - "compile-libfuzzer-introspector-x86_64": ] | ] ^ Step #6 - "compile-libfuzzer-introspector-x86_64": Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273/src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 2657 | : 5 if (I: sNeanote: r('operator==' has been explicitly marked deprecated heree_ Step #6 - "compile-libfuzzer-introspector-x86_64": n2 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() inste, e_n1, 1.0e-7)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 2725 | a d.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64":  /src/openbabel/src/builder.cpp189: | 572 : 28O:B _DEPRECATED_MSG("Usewarning:  IsApp'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": r572 | ox( ) ins tead " ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":   /src/openbabel/build/include/openbabel/babelconfig.h:38:38 : note:  else if (bond5 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 660expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define | if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 718 | if (bond1 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 720 | else if (bond2 == VZero) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64":  OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 287 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mol.cpp:3250:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3250 | if ((*ringit)->PathSize() == 5) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mol.cpp:3272:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3272 | else if ((*ringit)->PathSize() == 6) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/mol.cpp:3341:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3341 | loopSize = (*ringit)->PathSize(); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3735 | if (IsNearZero(length)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3802 | if (IsNearZero(length)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1427 | if (bond1 == VZero) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #def/src/openbabel/src/forcefield.cppi:3949n:e9: Owarning: B_'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 3 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 2 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 3 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 452 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 443 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 355 | rotor->SetDelta(delta); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 371 | if (!IsNearZero(pcharge)) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 34 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 51 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 5 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 111 | OB_DEPRECATED_MSG("Use v1ector versi warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": on instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 9 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 589 | gd->GetOriginVector(origin); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #6 - "compile-libfuzzer-introspector-x86_64": 310 | else if (vs[0][0] == '2') Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 3 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #6 - "compile-libfuzzer-introspector-x86_64": 911 | switch(pRD->ReactionType) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #6 - "compile-libfuzzer-introspector-x86_64": 990 | switch(pRD->ReactionType) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #6 - "compile-libfuzzer-introspector-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ~~~~ ^~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 275 | gd->GetOriginVector(origin); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 2 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 287 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 287 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #6 - "compile-libfuzzer-introspector-x86_64": 158 | switch (chirality) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^~~~~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wfortify-source] Step #6 - "compile-libfuzzer-introspector-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #6 - "compile-libfuzzer-introspector-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ~ ^~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #6 - "compile-libfuzzer-introspector-x86_64": 32 | #define MAXABS INT_MAX-2 Step #6 - "compile-libfuzzer-introspector-x86_64": |  ~~~~~~~^~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #6 - "compile-libfuzzer-introspector-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ~ ^~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #6 - "compile-libfuzzer-introspector-x86_64": 32 | #define MAXABS INT_MAX-2 Step #6 - "compile-libfuzzer-introspector-x86_64": |  ~~~~~~~^~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #6 - "compile-libfuzzer-introspector-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ~ ^~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #6 - "compile-libfuzzer-introspector-x86_64": 32 | #define MAXABS INT_MAX-2 Step #6 - "compile-libfuzzer-introspector-x86_64": |  ~~~~~~~^~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #6 - "compile-libfuzzer-introspector-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ~~ ^~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #6 - "compile-libfuzzer-introspector-x86_64": 32 | #define MAXABS INT_MAX-2 Step #6 - "compile-libfuzzer-introspector-x86_64": |  ~~~~~~~^~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #6 - "compile-libfuzzer-introspector-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #6 - "compile-libfuzzer-introspector-x86_64": |  ~~ ^~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #6 - "compile-libfuzzer-introspector-x86_64": 32 | #define MAXABS INT_MAX-2 Step #6 - "compile-libfuzzer-introspector-x86_64": |  ~~~~~~~^~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #6 - "compile-libfuzzer-introspector-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #6 - "compile-libfuzzer-introspector-x86_64": |  ~~ ^~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #6 - "compile-libfuzzer-introspector-x86_64": 32 | #define MAXABS INT_MAX-2 Step #6 - "compile-libfuzzer-introspector-x86_64": |  ~~~~~~~^~ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp[ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": :24: Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #6 - "compile-libfuzzer-introspector-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #6 - "compile-libfuzzer-introspector-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #6 - "compile-libfuzzer-introspector-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #6 - "compile-libfuzzer-introspector-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 6 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 2 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 1523 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 2 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | [ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19:[ 75%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 9 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #6 - "compile-libfuzzer-introspector-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ~~~~~~~~~~~ ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #6 - "compile-libfuzzer-introspector-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #6 - "compile-libfuzzer-introspector-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 197 | OB_DEPRECATED Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #6 - "compile-libfuzzer-introspector-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 4 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": 1 warning generated. Step #6 - "compile-libfuzzer-introspector-x86_64": 2 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 76%] Linking CXX static library libopenbabel.a Step #6 - "compile-libfuzzer-introspector-x86_64": [ 76%] Built target openbabel Step #6 - "compile-libfuzzer-introspector-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #6 - "compile-libfuzzer-introspector-x86_64": 255 | // / \  Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #6 - "compile-libfuzzer-introspector-x86_64": 270 | // / \  Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #6 - "compile-libfuzzer-introspector-x86_64": 285 | // \  Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #6 - "compile-libfuzzer-introspector-x86_64": 287 | // \  Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #6 - "compile-libfuzzer-introspector-x86_64": 310 | // \  Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #6 - "compile-libfuzzer-introspector-x86_64": 432 | // \  Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #6 - "compile-libfuzzer-introspector-x86_64": 102 | switch (units.at(i).type) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^~~~~~~~~~~~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #6 - "compile-libfuzzer-introspector-x86_64": 132 | switch (units.at(i).type) { Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^~~~~~~~~~~~~~~~ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #6 - "compile-libfuzzer-introspector-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #6 - "compile-libfuzzer-introspector-x86_64": [ 88%] Linking CXX executable ../bin/obabel Step #6 - "compile-libfuzzer-introspector-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #6 - "compile-libfuzzer-introspector-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 6 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 3 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": 2 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 190 | x = m2.Get( i, j ); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 17 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": 6 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #6 - "compile-libfuzzer-introspector-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #6 - "compile-libfuzzer-introspector-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #6 - "compile-libfuzzer-introspector-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #6 - "compile-libfuzzer-introspector-x86_64": |  ^ Step #6 - "compile-libfuzzer-introspector-x86_64": 24 warnings generated. Step #6 - "compile-libfuzzer-introspector-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Fuzz introspector is running Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 2] : 10:05:08 : Using default configuration Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Running introspector on ld-temp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Main function filename: /src/openbabel/tools/obabel.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Main function is non-empty Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : This means a main function is in the source code rather in the libfuzzer library, and thus we do not care about it. We only want to study the actual fuzzers. Exiting this run. Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Forcing analysis of all functions. This in auto-fuzz mode[Log level 1] : 10:05:08 : Logging next yaml tile to /src/allFunctionsWithMain-22-fa37JncCHr.yaml Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Wrapping all functions Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Fuzz introspector is running Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 2] : 10:05:08 : Using default configuration Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Running introspector on ld-temp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : This is a fuzzer, performing analysis Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Logging next yaml tile to /src/fuzzerLogFile-0-U4gxYh7yPM.data.yaml Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Wrapping all functions Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Fuzz introspector is running Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 2] : 10:05:08 : Using default configuration Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Running introspector on ld-temp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : This is a fuzzer, performing analysis Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Logging next yaml tile to /src/fuzzerLogFile-0-zSMLBrILto.data.yaml Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Wrapping all functions Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Fuzz introspector is running Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 2] : 10:05:08 : Using default configuration Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Running introspector on ld-temp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Main function filename: /src/openbabel/test/roundtrip.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Main function is non-empty Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : This means a main function is in the source code rather in the libfuzzer library, and thus we do not care about it. We only want to study the actual fuzzers. Exiting this run. Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Forcing analysis of all functions. This in auto-fuzz mode[Log level 1] : 10:05:08 : Logging next yaml tile to /src/allFunctionsWithMain-22-fa37JncCHr.yaml Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:08 : Wrapping all functions Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:15 : Fuzz introspector is running Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 2] : 10:05:15 : Using default configuration Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:15 : Running introspector on ld-temp.o Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:15 : Main function filename: /src/openbabel/build/test/test_runner.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:15 : Main function is non-empty Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:15 : This means a main function is in the source code rather in the libfuzzer library, and thus we do not care about it. We only want to study the actual fuzzers. Exiting this run. Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:15 : Forcing analysis of all functions. This in auto-fuzz mode[Log level 1] : 10:05:15 : Logging next yaml tile to /src/allFunctionsWithMain-22-fa37JncCHr.yaml Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:15 : Wrapping all functions Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:27 : Ended wrapping all functions Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:27 : Ended wrapping all functions Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:27 : Ended wrapping all functions Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:27 : Ended wrapping all functions Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:29 : Finished introspector module Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:29 : Finished introspector module Step #6 - "compile-libfuzzer-introspector-x86_64": [Log level 1] : 10:05:36 : Ended wrapping all functions Step #6 - "compile-libfuzzer-introspector-x86_64": [100%] Built target obabel Step #6 - "compile-libfuzzer-introspector-x86_64": [100%] Built target roundtrip Step #6 - "compile-libfuzzer-introspector-x86_64": [100%] Built target fuzz_obconversion_smiles Step #6 - "compile-libfuzzer-introspector-x86_64": [100%] Built target fuzz_obconversion_sdf Step #6 - "compile-libfuzzer-introspector-x86_64": [100%] Built target test_runner Step #6 - "compile-libfuzzer-introspector-x86_64": + cp bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-introspector-x86_64/ Step #6 - "compile-libfuzzer-introspector-x86_64": Reading package lists... 0% Reading package lists... 0% Reading package lists... 0% Reading package lists... 2% Reading package lists... 2% Reading package lists... 5% Reading package lists... 5% Reading package lists... 5% Reading package lists... 5% Reading package lists... 5% Reading package lists... 5% Reading package lists... 31% Reading package lists... 31% Reading package lists... 35% Reading package lists... 44% Reading package lists... 44% Reading package lists... 45% Reading package lists... 45% Reading package lists... 45% Reading package lists... 45% Reading package lists... 55% Reading package lists... 55% Reading package lists... 57% Reading package lists... 57% Reading package lists... 67% Reading package lists... 67% Reading package lists... 67% Reading package lists... 67% Reading package lists... 71% Reading package lists... 71% Reading package lists... 73% Reading package lists... 73% Reading package lists... 73% Reading package lists... 73% Reading package lists... 73% Reading package lists... 73% Reading package lists... 73% Reading package lists... 73% Reading package lists... 73% Reading package lists... 73% Reading package lists... 74% Reading package lists... 74% Reading package lists... 74% Reading package lists... 74% Reading package lists... 83% Reading package lists... 83% Reading package lists... 85% Reading package lists... 85% Reading package lists... 87% Reading package lists... 94% Reading package lists... 94% Reading package lists... 94% Reading package lists... 94% Reading package lists... 97% Reading package lists... 97% Reading package lists... 99% Reading package lists... 99% Reading package lists... 99% Reading package lists... 99% Reading package lists... 99% Reading package lists... 99% Reading package lists... Done Step #6 - "compile-libfuzzer-introspector-x86_64": Building dependency tree... 0% Building dependency tree... 0% Building dependency tree... 50% Building dependency tree... 50% Building dependency tree Step #6 - "compile-libfuzzer-introspector-x86_64": Reading state information... 0% Reading state information... 0% Reading state information... Done Step #6 - "compile-libfuzzer-introspector-x86_64": The following additional packages will be installed: Step #6 - "compile-libfuzzer-introspector-x86_64": libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libyaml-0-2 Step #6 - "compile-libfuzzer-introspector-x86_64": Suggested packages: Step #6 - "compile-libfuzzer-introspector-x86_64": libyaml-doc Step #6 - "compile-libfuzzer-introspector-x86_64": The following NEW packages will be installed: Step #6 - "compile-libfuzzer-introspector-x86_64": libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev Step #6 - "compile-libfuzzer-introspector-x86_64": libyaml-0-2 libyaml-dev zlib1g-dev Step #6 - "compile-libfuzzer-introspector-x86_64": 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Step #6 - "compile-libfuzzer-introspector-x86_64": Need to get 624 kB of archives. Step #6 - "compile-libfuzzer-introspector-x86_64": After this operation, 2657 kB of additional disk space will be used. Step #6 - "compile-libfuzzer-introspector-x86_64": 0% [Working] Get:1 http://archive.ubuntu.com/ubuntu focal/main amd64 libyaml-0-2 amd64 0.2.2-1 [48.9 kB] Step #6 - "compile-libfuzzer-introspector-x86_64": 2% [1 libyaml-0-2 14.2 kB/48.9 kB 29%] 9% [Working] Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libjpeg-turbo8 amd64 2.0.3-0ubuntu1.20.04.3 [118 kB] Step #6 - "compile-libfuzzer-introspector-x86_64": 9% [2 libjpeg-turbo8 2604 B/118 kB 2%] 26% [Waiting for headers] Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libjpeg-turbo8-dev amd64 2.0.3-0ubuntu1.20.04.3 [238 kB] Step #6 - "compile-libfuzzer-introspector-x86_64": 27% [3 libjpeg-turbo8-dev 1552 B/238 kB 1%] 59% [Waiting for headers] Get:4 http://archive.ubuntu.com/ubuntu focal/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Step #6 - "compile-libfuzzer-introspector-x86_64": 59% [4 libjpeg8 424 B/2194 B 19%] 62% [Waiting for headers] Get:5 http://archive.ubuntu.com/ubuntu focal/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Step #6 - "compile-libfuzzer-introspector-x86_64": 65% [Waiting for headers] Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Step #6 - "compile-libfuzzer-introspector-x86_64": 65% [6 libjpeg-dev 1546 B/1546 B 100%] 68% [Waiting for headers] Get:7 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu1.5 [155 kB] Step #6 - "compile-libfuzzer-introspector-x86_64": 68% [7 zlib1g-dev 2218 B/155 kB 1%] 90% [Waiting for headers] Get:8 http://archive.ubuntu.com/ubuntu focal/main amd64 libyaml-dev amd64 0.2.2-1 [58.2 kB] Step #6 - "compile-libfuzzer-introspector-x86_64": 90% [8 libyaml-dev 1470 B/58.2 kB 3%] 100% [Working] Fetched 624 kB in 0s (1722 kB/s) Step #6 - "compile-libfuzzer-introspector-x86_64": debconf: delaying package configuration, since apt-utils is not installed Step #6 - "compile-libfuzzer-introspector-x86_64": Selecting previously unselected package libyaml-0-2:amd64. Step #6 - "compile-libfuzzer-introspector-x86_64": (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20218 files and directories currently installed.) Step #6 - "compile-libfuzzer-introspector-x86_64": Preparing to unpack .../0-libyaml-0-2_0.2.2-1_amd64.deb ... Step #6 - "compile-libfuzzer-introspector-x86_64": Unpacking libyaml-0-2:amd64 (0.2.2-1) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Selecting previously unselected package libjpeg-turbo8:amd64. Step #6 - "compile-libfuzzer-introspector-x86_64": Preparing to unpack .../1-libjpeg-turbo8_2.0.3-0ubuntu1.20.04.3_amd64.deb ... Step #6 - "compile-libfuzzer-introspector-x86_64": Unpacking libjpeg-turbo8:amd64 (2.0.3-0ubuntu1.20.04.3) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Selecting previously unselected package libjpeg-turbo8-dev:amd64. Step #6 - "compile-libfuzzer-introspector-x86_64": Preparing to unpack .../2-libjpeg-turbo8-dev_2.0.3-0ubuntu1.20.04.3_amd64.deb ... Step #6 - "compile-libfuzzer-introspector-x86_64": Unpacking libjpeg-turbo8-dev:amd64 (2.0.3-0ubuntu1.20.04.3) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Selecting previously unselected package libjpeg8:amd64. Step #6 - "compile-libfuzzer-introspector-x86_64": Preparing to unpack .../3-libjpeg8_8c-2ubuntu8_amd64.deb ... Step #6 - "compile-libfuzzer-introspector-x86_64": Unpacking libjpeg8:amd64 (8c-2ubuntu8) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Selecting previously unselected package libjpeg8-dev:amd64. Step #6 - "compile-libfuzzer-introspector-x86_64": Preparing to unpack .../4-libjpeg8-dev_8c-2ubuntu8_amd64.deb ... Step #6 - "compile-libfuzzer-introspector-x86_64": Unpacking libjpeg8-dev:amd64 (8c-2ubuntu8) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Selecting previously unselected package libjpeg-dev:amd64. Step #6 - "compile-libfuzzer-introspector-x86_64": Preparing to unpack .../5-libjpeg-dev_8c-2ubuntu8_amd64.deb ... Step #6 - "compile-libfuzzer-introspector-x86_64": Unpacking libjpeg-dev:amd64 (8c-2ubuntu8) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Selecting previously unselected package zlib1g-dev:amd64. Step #6 - "compile-libfuzzer-introspector-x86_64": Preparing to unpack .../6-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu1.5_amd64.deb ... Step #6 - "compile-libfuzzer-introspector-x86_64": Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu1.5) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Selecting previously unselected package libyaml-dev:amd64. Step #6 - "compile-libfuzzer-introspector-x86_64": Preparing to unpack .../7-libyaml-dev_0.2.2-1_amd64.deb ... Step #6 - "compile-libfuzzer-introspector-x86_64": Unpacking libyaml-dev:amd64 (0.2.2-1) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Setting up libyaml-0-2:amd64 (0.2.2-1) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Setting up libjpeg-turbo8:amd64 (2.0.3-0ubuntu1.20.04.3) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu1.5) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Setting up libjpeg-turbo8-dev:amd64 (2.0.3-0ubuntu1.20.04.3) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Setting up libyaml-dev:amd64 (0.2.2-1) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Step #6 - "compile-libfuzzer-introspector-x86_64": Processing triggers for libc-bin (2.31-0ubuntu9.16) ... 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Use the --root-user-action option if you know what you are doing and want to suppress this warning. Step #6 - "compile-libfuzzer-introspector-x86_64": Collecting matplotlib Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading matplotlib-3.7.5-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (5.7 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Collecting contourpy>=1.0.1 (from matplotlib) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading contourpy-1.1.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.9 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Collecting cycler>=0.10 (from matplotlib) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Collecting fonttools>=4.22.0 (from matplotlib) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading fonttools-4.53.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (162 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Collecting kiwisolver>=1.0.1 (from matplotlib) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading kiwisolver-1.4.7-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (6.3 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Collecting numpy<2,>=1.20 (from matplotlib) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading numpy-1.24.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.6 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Collecting packaging>=20.0 (from matplotlib) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading packaging-24.1-py3-none-any.whl.metadata (3.2 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Collecting pillow>=6.2.0 (from matplotlib) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading pillow-10.4.0-cp38-cp38-manylinux_2_28_x86_64.whl.metadata (9.2 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Collecting pyparsing>=2.3.1 (from matplotlib) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading pyparsing-3.1.4-py3-none-any.whl.metadata (5.1 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Collecting python-dateutil>=2.7 (from matplotlib) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Collecting importlib-resources>=3.2.0 (from matplotlib) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading importlib_resources-6.4.4-py3-none-any.whl.metadata (4.0 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Collecting zipp>=3.1.0 (from importlib-resources>=3.2.0->matplotlib) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading zipp-3.20.1-py3-none-any.whl.metadata (3.7 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.8/site-packages (from python-dateutil>=2.7->matplotlib) (1.15.0) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading matplotlib-3.7.5-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (9.2 MB) Step #6 - "compile-libfuzzer-introspector-x86_64": [?25l ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 0.0/9.2 MB ? eta -:--:--  ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╸━━━━━━━━ 7.3/9.2 MB 44.3 MB/s eta 0:00:01  ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.2/9.2 MB 42.8 MB/s eta 0:00:00 Step #6 - "compile-libfuzzer-introspector-x86_64": [?25hDownloading contourpy-1.1.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (301 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading cycler-0.12.1-py3-none-any.whl (8.3 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading fonttools-4.53.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.7 MB) Step #6 - "compile-libfuzzer-introspector-x86_64": [?25l ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 0.0/4.7 MB ? eta -:--:--  ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.7/4.7 MB 74.6 MB/s eta 0:00:00 Step #6 - "compile-libfuzzer-introspector-x86_64": [?25hDownloading importlib_resources-6.4.4-py3-none-any.whl (35 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading kiwisolver-1.4.7-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.2 MB) Step #6 - "compile-libfuzzer-introspector-x86_64": [?25l ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 0.0/1.2 MB ? eta -:--:--  ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 68.9 MB/s eta 0:00:00 Step #6 - "compile-libfuzzer-introspector-x86_64": [?25hDownloading numpy-1.24.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB) Step #6 - "compile-libfuzzer-introspector-x86_64": [?25l ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 0.0/17.3 MB ? eta -:--:--  ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╸━ 16.8/17.3 MB 85.5 MB/s eta 0:00:01  ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 17.3/17.3 MB 66.2 MB/s eta 0:00:00 Step #6 - "compile-libfuzzer-introspector-x86_64": [?25hDownloading packaging-24.1-py3-none-any.whl (53 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading pillow-10.4.0-cp38-cp38-manylinux_2_28_x86_64.whl (4.5 MB) Step #6 - "compile-libfuzzer-introspector-x86_64": [?25l ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 0.0/4.5 MB ? eta -:--:--  ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 72.9 MB/s eta 0:00:00 Step #6 - "compile-libfuzzer-introspector-x86_64": [?25hDownloading pyparsing-3.1.4-py3-none-any.whl (104 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Downloading zipp-3.20.1-py3-none-any.whl (9.0 kB) Step #6 - "compile-libfuzzer-introspector-x86_64": Installing collected packages: zipp, python-dateutil, pyparsing, pillow, packaging, numpy, kiwisolver, fonttools, cycler, importlib-resources, contourpy, matplotlib Step #6 - "compile-libfuzzer-introspector-x86_64": Successfully installed contourpy-1.1.1 cycler-0.12.1 fonttools-4.53.1 importlib-resources-6.4.4 kiwisolver-1.4.7 matplotlib-3.7.5 numpy-1.24.4 packaging-24.1 pillow-10.4.0 pyparsing-3.1.4 python-dateutil-2.9.0.post0 zipp-3.20.1 Step #6 - "compile-libfuzzer-introspector-x86_64": WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager, possibly rendering your system unusable.It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv. Use the --root-user-action option if you know what you are doing and want to suppress this warning. Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/fuzzerLogFile-0-U4gxYh7yPM.data' and '/src/inspector/fuzzerLogFile-0-U4gxYh7yPM.data' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/fuzzerLogFile-0-zSMLBrILto.data.yaml' and '/src/inspector/fuzzerLogFile-0-zSMLBrILto.data.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/fuzzerLogFile-0-U4gxYh7yPM.data.yaml' and '/src/inspector/fuzzerLogFile-0-U4gxYh7yPM.data.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/fuzzerLogFile-0-zSMLBrILto.data.debug_all_functions' and '/src/inspector/fuzzerLogFile-0-zSMLBrILto.data.debug_all_functions' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/fuzzerLogFile-0-zSMLBrILto.data.debug_all_globals' and '/src/inspector/fuzzerLogFile-0-zSMLBrILto.data.debug_all_globals' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/fuzzerLogFile-0-U4gxYh7yPM.data.debug_info' and '/src/inspector/fuzzerLogFile-0-U4gxYh7yPM.data.debug_info' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/fuzzerLogFile-0-zSMLBrILto.data.debug_all_types' and '/src/inspector/fuzzerLogFile-0-zSMLBrILto.data.debug_all_types' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-12-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-12-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-4-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-4-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-11-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-11-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-18-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-18-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-8-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-8-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-20-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-20-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-5-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-5-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-14-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-14-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-19-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-19-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-16-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-16-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-10-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-10-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-13-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-13-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-15-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-15-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-2-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-2-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": cp: '/src/inspector/allFunctionsWithMain-3-fa37JncCHr.yaml' and '/src/inspector/allFunctionsWithMain-3-fa37JncCHr.yaml' are the same file Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:07:48.077 INFO main - main: Running fuzz introspector post-processing Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:07:48.077 INFO utils - scan_executables_for_fuzz_introspector_logs: File: /workspace/out/libfuzzer-introspector-x86_64/llvm-symbolizer is executable Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:07:48.077 INFO utils - scan_executables_for_fuzz_introspector_logs: File: /workspace/out/libfuzzer-introspector-x86_64/fuzz_obconversion_smiles is executable Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:07:48.078 INFO utils - scan_executables_for_fuzz_introspector_logs: File: /workspace/out/libfuzzer-introspector-x86_64/fuzz_obconversion_sdf is executable Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:07:48.671 INFO utils - scan_executables_for_fuzz_introspector_logs: Found match fuzzerLogFile-0-U4gxYh7yPM Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:07:49.074 INFO utils - scan_executables_for_fuzz_introspector_logs: Found match fuzzerLogFile-0-zSMLBrILto Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:07:49.075 INFO commands - correlate_binaries_to_logs: Pairings: [{'executable_path': '/workspace/out/libfuzzer-introspector-x86_64/fuzz_obconversion_smiles', 'fuzzer_log_file': 'fuzzerLogFile-0-U4gxYh7yPM'}, {'executable_path': '/workspace/out/libfuzzer-introspector-x86_64/fuzz_obconversion_sdf', 'fuzzer_log_file': 'fuzzerLogFile-0-zSMLBrILto'}] Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:07:49.076 INFO main - main: Ending fuzz introspector post-processing Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:07:49.305 INFO main - main: Running fuzz introspector post-processing Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:07:49.305 INFO data_loader - load_all_profiles: - found 2 profiles to load Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:07:49.329 INFO data_loader - read_fuzzer_data_file_to_profile: - loading /src/inspector/fuzzerLogFile-0-U4gxYh7yPM.data Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:07:49.330 INFO utils - data_file_read_yaml: Set base loader to use CSafeLoader Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:07:49.331 INFO data_loader - read_fuzzer_data_file_to_profile: - loading /src/inspector/fuzzerLogFile-0-zSMLBrILto.data Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:07:49.331 INFO utils - data_file_read_yaml: Set base loader to use CSafeLoader Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:37.409 INFO utils - data_file_read_yaml: Loaded single yaml module Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:37.410 INFO data_loader - read_fuzzer_data_file_to_profile: Finished loading /src/inspector/fuzzerLogFile-0-U4gxYh7yPM.data Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:37.961 INFO utils - data_file_read_yaml: Loaded single yaml module Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:37.961 INFO data_loader - read_fuzzer_data_file_to_profile: Finished loading /src/inspector/fuzzerLogFile-0-zSMLBrILto.data Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:38.804 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:39.402 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:39.562 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:40.165 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:41.635 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:41.909 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:42.258 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:42.534 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:42.635 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:43.253 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:43.576 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:44.195 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:46.531 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:46.561 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:46.664 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.25 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:47.166 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:47.172 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:47.203 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:47.306 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.25 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:47.391 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:47.815 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:48.039 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:49.216 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:49.884 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:50.323 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.10 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:50.387 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.6 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:51.006 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.10 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:51.061 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:51.070 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.6 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:51.752 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:51.910 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:52.609 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:52.910 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:52.910 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.3 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:52.910 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.5 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:52.913 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.5 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:52.921 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.3 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:52.922 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.7 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:52.937 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:52.960 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:52.961 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.3 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:52.961 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.5 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:52.961 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.7 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:52.961 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.9 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:53.618 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:53.618 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.3 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:53.618 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.5 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:53.621 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.5 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:53.630 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.3 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:53.630 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.7 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:53.646 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:53.669 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:53.669 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.3 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:53.670 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.5 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:53.670 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.7 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:53.670 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.9 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:53.988 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.3 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:54.714 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.3 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:57.233 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.8 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:57.281 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.2 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:57.985 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.8 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:58.034 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.2 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:59.257 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:59.257 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.2 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:08:59.258 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.3 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:00.031 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:00.031 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.2 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:00.031 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.3 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:00.245 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:01.032 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:03.300 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:03.334 INFO data_loader - read_fuzzer_data_file_to_profile: Returning profile Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:04.090 INFO fuzzer_profile - _set_function_list: May have non-normalised function: __cxx_global_var_init.1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:04.122 INFO data_loader - read_fuzzer_data_file_to_profile: Returning profile Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.183 INFO analysis - load_data_files: Found 2 profiles Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.184 INFO utils - data_file_read_yaml: Set base loader to use CSafeLoader Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.184 INFO utils - data_file_read_yaml: Loaded single yaml module Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.184 INFO fuzzer_profile - correlate_executable_name: Correlated fuzzerLogFile-0-U4gxYh7yPM.data with fuzzerLogFile-0-U4gxYh7yPM.data Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.184 INFO fuzzer_profile - correlate_executable_name: Correlated fuzzerLogFile-0-zSMLBrILto.data with fuzzerLogFile-0-zSMLBrILto.data Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.184 INFO analysis - load_data_files: [+] Accummulating profiles Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.184 INFO analysis - load_data_files: Accummulating using multiprocessing Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.227 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_smiles: propagating functions reached Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.243 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_sdf: propagating functions reached Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.523 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_smiles: setting reached funcs Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.523 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_smiles: setting unreached funcs Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.535 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_smiles: loading coverage Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.535 INFO fuzzer_profile - _load_coverage: Loading coverage of type c-cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.536 INFO code_coverage - load_llvm_coverage: Loading LLVM coverage for target fuzz_obconversion_smiles Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.536 INFO code_coverage - load_llvm_coverage: Found 2 coverage reports Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.536 INFO code_coverage - load_llvm_coverage: Using the following coverages ['/src/inspector/fuzz_obconversion_smiles.covreport'] Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.536 INFO code_coverage - load_llvm_coverage: Reading coverage report: /src/inspector/fuzz_obconversion_smiles.covreport Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.543 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_sdf: setting reached funcs Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.543 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_sdf: setting unreached funcs Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.555 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_sdf: loading coverage Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.555 INFO fuzzer_profile - _load_coverage: Loading coverage of type c-cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.555 INFO code_coverage - load_llvm_coverage: Loading LLVM coverage for target fuzz_obconversion_sdf Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.556 INFO code_coverage - load_llvm_coverage: Found 2 coverage reports Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.556 INFO code_coverage - load_llvm_coverage: Using the following coverages ['/src/inspector/fuzz_obconversion_sdf.covreport'] Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.556 INFO code_coverage - load_llvm_coverage: Reading coverage report: /src/inspector/fuzz_obconversion_sdf.covreport Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.674 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_smiles: setting file targets Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.674 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_smiles: setting total basic blocks Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.674 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_smiles: setting cyclomatic complexity Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.674 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_smiles: setting fd cache Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:17.689 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_smiles: finished accummulating profile Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:18.315 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_sdf: setting file targets Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:18.316 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_sdf: setting total basic blocks Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:18.316 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_sdf: setting cyclomatic complexity Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:18.316 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_sdf: setting fd cache Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:18.331 INFO fuzzer_profile - accummulate_profile: fuzz_obconversion_sdf: finished accummulating profile Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:35.877 INFO analysis - load_data_files: [+] Creating project profile Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:35.878 INFO project_profile - __init__: Creating merged profile of 2 profiles Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:35.878 INFO project_profile - __init__: Populating functions reached Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:35.878 INFO project_profile - __init__: Populating functions unreached Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:35.882 INFO project_profile - __init__: Creating all_functions dictionary Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:35.940 INFO project_profile - __init__: Gathering complexity and incoming references of each function Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:36.482 INFO project_profile - __init__: Completed creationg of merged profile Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:36.482 INFO analysis - load_data_files: [+] Refining profiles Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:37.147 INFO utils - get_target_coverage_url: Extracting coverage for https://storage.googleapis.com/oss-fuzz-coverage/openbabel/reports/20240907/linux -- fuzz_obconversion_smiles Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:37.147 INFO analysis - overlay_calltree_with_coverage: Using coverage url: https://storage.googleapis.com/oss-fuzz-coverage/openbabel/reports-by-target/20240907/fuzz_obconversion_smiles/linux Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:37.148 INFO analysis - overlay_calltree_with_coverage: Overlaying 1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:37.152 INFO analysis - overlay_calltree_with_coverage: Overlaying 2 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:37.152 INFO analysis - overlay_calltree_with_coverage: Overlaying 3 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:37.152 INFO analysis - overlay_calltree_with_coverage: Updating branch complexities Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:44.497 INFO analysis - overlay_calltree_with_coverage: [+] found 38 branch blockers. Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:44.499 INFO utils - get_target_coverage_url: Extracting coverage for https://storage.googleapis.com/oss-fuzz-coverage/openbabel/reports/20240907/linux -- fuzz_obconversion_sdf Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:44.499 INFO analysis - overlay_calltree_with_coverage: Using coverage url: https://storage.googleapis.com/oss-fuzz-coverage/openbabel/reports-by-target/20240907/fuzz_obconversion_sdf/linux Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:44.499 INFO analysis - overlay_calltree_with_coverage: Overlaying 1 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:44.502 INFO analysis - overlay_calltree_with_coverage: Overlaying 2 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:44.502 INFO analysis - overlay_calltree_with_coverage: Overlaying 3 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:44.503 INFO analysis - overlay_calltree_with_coverage: Updating branch complexities Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:51.714 INFO analysis - overlay_calltree_with_coverage: [+] found 59 branch blockers. Step #6 - "compile-libfuzzer-introspector-x86_64": debug info file: /src/inspector/fuzzerLogFile-0-U4gxYh7yPM.data.debug_info Step #6 - "compile-libfuzzer-introspector-x86_64": debug info file: /src/inspector/fuzzerLogFile-0-zSMLBrILto.data.debug_info Step #6 - "compile-libfuzzer-introspector-x86_64": debug info file: /src/inspector/fuzzerLogFile-0-zSMLBrILto.data.debug_all_types Step #6 - "compile-libfuzzer-introspector-x86_64": debug info file: /src/inspector/fuzzerLogFile-0-U4gxYh7yPM.data.debug_all_types Step #6 - "compile-libfuzzer-introspector-x86_64": debug info file: /src/inspector/fuzzerLogFile-0-zSMLBrILto.data.debug_all_functions Step #6 - "compile-libfuzzer-introspector-x86_64": debug info file: /src/inspector/fuzzerLogFile-0-U4gxYh7yPM.data.debug_all_functions Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:51.981 INFO commands - run_analysis_on_dir: Analyses to run: ['OptimalTargets', 'RuntimeCoverageAnalysis', 'FuzzEngineInputAnalysis', 'FilePathAnalyser', 'MetadataAnalysis', 'AnnotatedCFG'] Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:51.982 INFO commands - run_analysis_on_dir: [+] Creating HTML report Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:51.982 INFO html_report - create_html_report: - Creating HTML report Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:51.982 INFO html_report - create_section_project_overview: - Creating reachability overview table Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.111 INFO html_report - create_section_fuzzers_overview: - Creating table with overview of all fuzzers Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.111 INFO html_report - create_section_all_functions: - Creating table with information about all functions in target Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.244 INFO html_report - create_all_function_table: Assembled a total of 4470 entries Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.244 INFO html_report - create_section_fuzzer_detailed_section: - Creating section with details about each fuzzer Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.271 INFO calltree_analysis - __init__: Creating FuzzCalltreeAnalysis Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.271 INFO calltree_analysis - create_calltree: In calltree Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.273 INFO calltree_analysis - create_calltree: At end Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.273 INFO calltree_analysis - create_calltree: calltree_html_section_string: : 100 -- : 100 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.274 INFO calltree_analysis - create_calltree: Calltree created Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.274 INFO calltree_analysis - create_branch_blocker_table: Creating branch blocker table Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.274 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.274 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.274 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.274 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.274 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.274 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.274 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.274 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.275 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.275 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.275 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:52.275 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.048 INFO font_manager - _load_fontmanager: generated new fontManager Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.338 INFO html_helpers - create_horisontal_calltree_image: Creating image fuzz_obconversion_smiles_colormap.png Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.338 INFO html_helpers - create_horisontal_calltree_image: - extracted the callsites (70 nodes) Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.410 INFO html_helpers - create_horisontal_calltree_image: - iterated over color list Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.410 INFO html_helpers - create_horisontal_calltree_image: - saving image Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.579 INFO html_helpers - create_horisontal_calltree_image: - image saved Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.580 INFO calltree_analysis - create_branch_blocker_table: Creating branch blocker table Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.580 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.580 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.581 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.581 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.581 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.581 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.581 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.581 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.581 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.581 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.581 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.581 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.587 INFO calltree_analysis - __init__: Creating FuzzCalltreeAnalysis Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.587 INFO calltree_analysis - create_calltree: In calltree Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.590 INFO calltree_analysis - create_calltree: At end Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.590 INFO calltree_analysis - create_calltree: calltree_html_section_string: : 100 -- : 100 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.590 INFO calltree_analysis - create_calltree: Calltree created Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.590 INFO calltree_analysis - create_branch_blocker_table: Creating branch blocker table Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.590 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.591 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.591 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.591 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.591 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.591 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.591 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.591 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.591 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.591 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.591 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.592 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.679 INFO html_helpers - create_horisontal_calltree_image: Creating image fuzz_obconversion_sdf_colormap.png Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.679 INFO html_helpers - create_horisontal_calltree_image: - extracted the callsites (70 nodes) Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.744 INFO html_helpers - create_horisontal_calltree_image: - iterated over color list Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.744 INFO html_helpers - create_horisontal_calltree_image: - saving image Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.847 INFO html_helpers - create_horisontal_calltree_image: - image saved Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.848 INFO calltree_analysis - create_branch_blocker_table: Creating branch blocker table Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.848 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.848 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.848 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.848 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.848 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.848 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.848 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.848 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.848 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.848 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.849 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.849 ERROR calltree_analysis - create_branch_blocker_table: The calltree index is not valid! Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.858 INFO html_report - create_section_optional_analyses: - Handling optional analyses Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.859 INFO optimal_targets - analysis_func: - Running analysis OptimalTargets Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:09:53.859 INFO optimal_targets - iteratively_get_optimal_targets: - in iteratively_get_optimal_targets Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:06.930 INFO optimal_targets - analysis_get_optimal_targets: - in analysis_get_optimal_targets Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:06.938 INFO optimal_targets - iteratively_get_optimal_targets: Getting 7 optimal targets Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:06.938 INFO optimal_targets - iteratively_get_optimal_targets: - sorting by unreached complexity. Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:06.939 INFO optimal_targets - add_func_to_reached_and_clone: Creating a deepcopy Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:19.778 INFO optimal_targets - add_func_to_reached_and_clone: Updating hitcount Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:19.783 INFO optimal_targets - add_func_to_reached_and_clone: Updating hitcount-related data Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:20.349 INFO optimal_targets - analysis_get_optimal_targets: - in analysis_get_optimal_targets Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:20.357 INFO optimal_targets - iteratively_get_optimal_targets: - sorting by unreached complexity. Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:20.358 INFO optimal_targets - add_func_to_reached_and_clone: Creating a deepcopy Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:33.241 INFO optimal_targets - add_func_to_reached_and_clone: Updating hitcount Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:33.246 INFO optimal_targets - add_func_to_reached_and_clone: Updating hitcount-related data Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:33.765 INFO optimal_targets - analysis_get_optimal_targets: - in analysis_get_optimal_targets Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:33.823 INFO optimal_targets - iteratively_get_optimal_targets: - sorting by unreached complexity. Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:33.825 INFO optimal_targets - add_func_to_reached_and_clone: Creating a deepcopy Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:46.809 INFO optimal_targets - add_func_to_reached_and_clone: Updating hitcount Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:46.814 INFO optimal_targets - add_func_to_reached_and_clone: Updating hitcount-related data Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:47.333 INFO optimal_targets - analysis_get_optimal_targets: - in analysis_get_optimal_targets Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:47.391 INFO optimal_targets - iteratively_get_optimal_targets: - sorting by unreached complexity. Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:10:47.393 INFO optimal_targets - add_func_to_reached_and_clone: Creating a deepcopy Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:00.494 INFO optimal_targets - add_func_to_reached_and_clone: Updating hitcount Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:00.499 INFO optimal_targets - add_func_to_reached_and_clone: Updating hitcount-related data Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:01.020 INFO optimal_targets - analysis_get_optimal_targets: - in analysis_get_optimal_targets Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:01.075 INFO optimal_targets - iteratively_get_optimal_targets: - sorting by unreached complexity. Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:01.077 INFO optimal_targets - add_func_to_reached_and_clone: Creating a deepcopy Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:14.296 INFO optimal_targets - add_func_to_reached_and_clone: Updating hitcount Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:14.303 INFO optimal_targets - add_func_to_reached_and_clone: Updating hitcount-related data Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:14.836 INFO optimal_targets - analysis_get_optimal_targets: - in analysis_get_optimal_targets Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:14.892 INFO optimal_targets - iteratively_get_optimal_targets: - sorting by unreached complexity. Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:14.893 INFO optimal_targets - add_func_to_reached_and_clone: Creating a deepcopy Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:28.096 INFO optimal_targets - add_func_to_reached_and_clone: Updating hitcount Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:28.101 INFO optimal_targets - add_func_to_reached_and_clone: Updating hitcount-related data Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:28.641 INFO optimal_targets - analysis_get_optimal_targets: - in analysis_get_optimal_targets Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:28.694 INFO optimal_targets - iteratively_get_optimal_targets: - sorting by unreached complexity. Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:28.695 INFO optimal_targets - add_func_to_reached_and_clone: Creating a deepcopy Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:42.070 INFO optimal_targets - add_func_to_reached_and_clone: Updating hitcount Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:42.075 INFO optimal_targets - add_func_to_reached_and_clone: Updating hitcount-related data Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:42.617 INFO optimal_targets - iteratively_get_optimal_targets: Found the following optimal functions: { ['OpenBabel::MDLFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)', 'OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)', 'OpenBabel::MCDLFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)', 'OpenBabel::CIFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)', 'OpenBabel::OpGen3D::Do(OpenBabel::OBBase*, char const*, std::__1::map, std::__1::allocator >, std::__1::basic_string, std::__1::allocator >, std::__1::less, std::__1::allocator > >, std::__1::allocator, std::__1::allocator > const, std::__1::basic_string, std::__1::allocator > > > > const*, OpenBabel::OBConversion*)', 'OpenBabel::SVGFormat::WriteChemObject(OpenBabel::OBConversion*)', 'OpenBabel::MCDLFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)'] } Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:42.859 INFO html_report - create_all_function_table: Assembled a total of 4470 entries Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:42.962 INFO optimal_targets - analysis_func: - Completed analysis OptimalTargets Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.132 INFO engine_input - analysis_func: - Running analysis FuzzEngineInputAnalysis Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.132 INFO engine_input - analysis_func: Generating input for fuzz_obconversion_smiles Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.133 INFO calltree_analysis - __init__: Creating FuzzCalltreeAnalysis Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.133 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel8OBPlugin10GetTypeMapEPKc Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.133 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel12OBConversion10FindFormatEPKc Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.134 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel8OBPlugin9GetPluginEPKcS2_ Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.134 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel12OBConversion14SetStartAndEndEv Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.134 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel12OBConversion19RegisterOptionParamENSt3__112basic_stringIcNS1_11char_traitsIcEENS1_9allocatorIcEEEEPNS_8OBFormatEiNS0_11Option_typeE Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.134 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: LLVMFuzzerTestOneInput Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.134 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel12OBConversion10ReadStringEPNS_6OBBaseENSt3__112basic_stringIcNS3_11char_traitsIcEENS3_9allocatorIcEEEE Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.134 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel12OBConversion14SetStartAndEndEv Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.134 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel5OBMolD2Ev Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.134 INFO engine_input - analysis_func: Generating input for fuzz_obconversion_sdf Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.135 INFO calltree_analysis - __init__: Creating FuzzCalltreeAnalysis Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.135 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel8OBPlugin10GetTypeMapEPKc Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.135 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel12OBConversion10FindFormatEPKc Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.135 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel8OBPlugin9GetPluginEPKcS2_ Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.135 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel12OBConversion14SetStartAndEndEv Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.135 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel12OBConversion19RegisterOptionParamENSt3__112basic_stringIcNS1_11char_traitsIcEENS1_9allocatorIcEEEEPNS_8OBFormatEiNS0_11Option_typeE Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.135 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: LLVMFuzzerTestOneInput Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.135 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel12OBConversion10ReadStringEPNS_6OBBaseENSt3__112basic_stringIcNS3_11char_traitsIcEENS3_9allocatorIcEEEE Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.135 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel12OBConversion14SetStartAndEndEv Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.135 INFO engine_input - get_fuzzer_focus_function_section: Found focus function: _ZN9OpenBabel5OBMolD2Ev Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.136 INFO engine_input - analysis_func: - Completed analysis FuzzEngineInputAnalysis Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.136 INFO runtime_coverage_analysis - analysis_func: - Running analysis RuntimeCoverageAnalysis Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.136 INFO runtime_coverage_analysis - get_low_cov_high_line_funcs: Extracting low cov high line funcs Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.140 INFO runtime_coverage_analysis - analysis_func: - Completed analysis RuntimeCoverageAnalysis Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:43.140 INFO filepath_analyser - analysis_func: - Running analysis FilePathAnalyser Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:45.409 INFO metadata - analysis_func: - Running analysis MetadataAnalysis Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:45.409 INFO metadata - analysis_func: - Completed analysis MetadataAnalysis Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:45.409 INFO annotated_cfg - __init__: Creating annotated CFG Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:45.409 INFO annotated_cfg - analysis_func: Creating annotated CFGs Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:45.410 INFO annotated_cfg - analysis_func: Analysing: fuzz_obconversion_smiles Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:45.411 INFO annotated_cfg - analysis_func: Analysing: fuzz_obconversion_sdf Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:45.414 INFO utils - get_target_coverage_url: Extracting coverage for https://storage.googleapis.com/oss-fuzz-coverage/openbabel/reports/20240907/linux -- fuzz_obconversion_smiles Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:45.414 INFO utils - get_target_coverage_url: Extracting coverage for https://storage.googleapis.com/oss-fuzz-coverage/openbabel/reports/20240907/linux -- fuzz_obconversion_sdf Step #6 - "compile-libfuzzer-introspector-x86_64": Loading report: Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:45.697 INFO debug_info - extract_all_functions_in_debug_info: Extracting functions Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:48.418 INFO debug_info - extract_all_functions_in_debug_info: Extracting functions Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:11:50.733 INFO debug_info - load_debug_all_yaml_files: Set base loader to use CSafeLoader Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:03.871 INFO debug_info - load_debug_all_yaml_files: Set base loader to use CSafeLoader Step #6 - "compile-libfuzzer-introspector-x86_64": Correlating Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.200 INFO debug_info - correlate_debugged_function_to_debug_types: Creating dictionary Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.200 INFO debug_info - create_friendly_debug_types: Have to create for 243356 addresses Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.431 INFO debug_info - create_friendly_debug_types: Idx: 2500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.451 INFO debug_info - create_friendly_debug_types: Idx: 5000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.472 INFO debug_info - create_friendly_debug_types: Idx: 7500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.492 INFO debug_info - create_friendly_debug_types: Idx: 10000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.514 INFO debug_info - create_friendly_debug_types: Idx: 12500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.535 INFO debug_info - create_friendly_debug_types: Idx: 15000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.556 INFO debug_info - create_friendly_debug_types: Idx: 17500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.577 INFO debug_info - create_friendly_debug_types: Idx: 20000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.598 INFO debug_info - create_friendly_debug_types: Idx: 22500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.620 INFO debug_info - create_friendly_debug_types: Idx: 25000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.641 INFO debug_info - create_friendly_debug_types: Idx: 27500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.661 INFO debug_info - create_friendly_debug_types: Idx: 30000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.682 INFO debug_info - create_friendly_debug_types: Idx: 32500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.703 INFO debug_info - create_friendly_debug_types: Idx: 35000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.723 INFO debug_info - create_friendly_debug_types: Idx: 37500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.745 INFO debug_info - create_friendly_debug_types: Idx: 40000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.766 INFO debug_info - create_friendly_debug_types: Idx: 42500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.787 INFO debug_info - create_friendly_debug_types: Idx: 45000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.808 INFO debug_info - create_friendly_debug_types: Idx: 47500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.828 INFO debug_info - create_friendly_debug_types: Idx: 50000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.850 INFO debug_info - create_friendly_debug_types: Idx: 52500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.871 INFO debug_info - create_friendly_debug_types: Idx: 55000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.892 INFO debug_info - create_friendly_debug_types: Idx: 57500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.913 INFO debug_info - create_friendly_debug_types: Idx: 60000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.934 INFO debug_info - create_friendly_debug_types: Idx: 62500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.954 INFO debug_info - create_friendly_debug_types: Idx: 65000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.976 INFO debug_info - create_friendly_debug_types: Idx: 67500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:49.996 INFO debug_info - create_friendly_debug_types: Idx: 70000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.017 INFO debug_info - create_friendly_debug_types: Idx: 72500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.037 INFO debug_info - create_friendly_debug_types: Idx: 75000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.058 INFO debug_info - create_friendly_debug_types: Idx: 77500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.080 INFO debug_info - create_friendly_debug_types: Idx: 80000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.101 INFO debug_info - create_friendly_debug_types: Idx: 82500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.123 INFO debug_info - create_friendly_debug_types: Idx: 85000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.148 INFO debug_info - create_friendly_debug_types: Idx: 87500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.171 INFO debug_info - create_friendly_debug_types: Idx: 90000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.193 INFO debug_info - create_friendly_debug_types: Idx: 92500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.214 INFO debug_info - create_friendly_debug_types: Idx: 95000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.235 INFO debug_info - create_friendly_debug_types: Idx: 97500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.256 INFO debug_info - create_friendly_debug_types: Idx: 100000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.277 INFO debug_info - create_friendly_debug_types: Idx: 102500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.300 INFO debug_info - create_friendly_debug_types: Idx: 105000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.326 INFO debug_info - create_friendly_debug_types: Idx: 107500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.350 INFO debug_info - create_friendly_debug_types: Idx: 110000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.375 INFO debug_info - create_friendly_debug_types: Idx: 112500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.399 INFO debug_info - create_friendly_debug_types: Idx: 115000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.424 INFO debug_info - create_friendly_debug_types: Idx: 117500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.450 INFO debug_info - create_friendly_debug_types: Idx: 120000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.473 INFO debug_info - create_friendly_debug_types: Idx: 122500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.495 INFO debug_info - create_friendly_debug_types: Idx: 125000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.516 INFO debug_info - create_friendly_debug_types: Idx: 127500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.538 INFO debug_info - create_friendly_debug_types: Idx: 130000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.561 INFO debug_info - create_friendly_debug_types: Idx: 132500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.584 INFO debug_info - create_friendly_debug_types: Idx: 135000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.606 INFO debug_info - create_friendly_debug_types: Idx: 137500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.627 INFO debug_info - create_friendly_debug_types: Idx: 140000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.649 INFO debug_info - create_friendly_debug_types: Idx: 142500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.670 INFO debug_info - create_friendly_debug_types: Idx: 145000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.693 INFO debug_info - create_friendly_debug_types: Idx: 147500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.715 INFO debug_info - create_friendly_debug_types: Idx: 150000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.736 INFO debug_info - create_friendly_debug_types: Idx: 152500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.758 INFO debug_info - create_friendly_debug_types: Idx: 155000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.780 INFO debug_info - create_friendly_debug_types: Idx: 157500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.803 INFO debug_info - create_friendly_debug_types: Idx: 160000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.825 INFO debug_info - create_friendly_debug_types: Idx: 162500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.847 INFO debug_info - create_friendly_debug_types: Idx: 165000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.868 INFO debug_info - create_friendly_debug_types: Idx: 167500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.891 INFO debug_info - create_friendly_debug_types: Idx: 170000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.914 INFO debug_info - create_friendly_debug_types: Idx: 172500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.944 INFO debug_info - create_friendly_debug_types: Idx: 175000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.965 INFO debug_info - create_friendly_debug_types: Idx: 177500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:50.987 INFO debug_info - create_friendly_debug_types: Idx: 180000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:51.008 INFO debug_info - create_friendly_debug_types: Idx: 182500 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:51.030 INFO debug_info - create_friendly_debug_types: Idx: 185000 Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:13:51.053 INFO debug_info - 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"compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/reaction.h ------- 21 Step #6 - "compile-libfuzzer-introspector-x86_64": /usr/local/include/c++/v1/__hash_table ------- 114 Step #6 - "compile-libfuzzer-introspector-x86_64": /usr/local/include/c++/v1/unordered_map ------- 100 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/smilesformat.cpp ------- 121 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/stereo/squareplanar.h ------- 20 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/mdlformat.cpp ------- 57 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/alias.h ------- 20 Step #6 - "compile-libfuzzer-introspector-x86_64": /usr/local/include/c++/v1/iomanip ------- 9 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/mol2format.cpp ------- 15 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/pdbformat.cpp ------- 18 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/copyformat.cpp ------- 6 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/MNAformat.cpp ------- 13 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/molreport.cpp ------- 8 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/nulformat.cpp ------- 7 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/povrayformat.cpp ------- 19 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/reportformat.cpp ------- 19 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/text.h ------- 6 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/svgformat.cpp ------- 16 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/depict/painter.h ------- 23 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/depict/depict.cpp ------- 73 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/include/openbabel/depict/depict.h ------- 22 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/textformat.cpp ------- 7 Step #6 - "compile-libfuzzer-introspector-x86_64": /usr/local/include/c++/v1/__iterator/istreambuf_iterator.h ------- 10 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/titleformat.cpp ------- 9 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/acesformat.cpp ------- 15 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/abinitformat.cpp ------- 8 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/adfformat.cpp ------- 65 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/aoforceformat.cpp ------- 8 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/castepformat.cpp ------- 9 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/dmolformat.cpp ------- 10 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/fchkformat.cpp ------- 22 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/fhiaimsformat.cpp ------- 10 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/gamessformat.cpp ------- 20 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/gaussformat.cpp ------- 19 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp ------- 12 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/gausszmatformat.cpp ------- 11 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/gulpformat.cpp ------- 9 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/hinformat.cpp ------- 10 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/jaguarformat.cpp ------- 17 Step #6 - "compile-libfuzzer-introspector-x86_64": /src/openbabel/src/formats/molproformat.cpp ------- 13 Step #6 - 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extract_test_information: /src/openbabel/test/invalidsmiles.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.117 INFO analysis - extract_test_information: /src/openbabel/test/cansmi.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.117 INFO analysis - extract_test_information: /src/openbabel/external/rapidjson-1.1.0/test/perftest/rapidjsontest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.118 INFO analysis - extract_test_information: /src/openbabel/test/ringtest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.119 INFO analysis - extract_test_information: /src/openbabel/test/multicmltest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.119 INFO analysis - extract_test_information: /src/openbabel/test/bond.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.119 INFO analysis - extract_test_information: /src/openbabel/test/smartsparse.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.119 INFO analysis - extract_test_information: /src/openbabel/test/strip.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.119 INFO analysis - extract_test_information: /src/openbabel/test/implicitHtest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.120 INFO analysis - extract_test_information: /src/openbabel/test/datatest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.120 INFO analysis - extract_test_information: /src/openbabel/external/rapidjson-1.1.0/test/unittest/writertest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.121 INFO analysis - extract_test_information: /src/openbabel/test/ffuff.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.121 INFO analysis - extract_test_information: /src/openbabel/test/conversion.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.121 INFO analysis - extract_test_information: /src/openbabel/test/gziptest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.121 INFO analysis - extract_test_information: /src/openbabel/test/rotortest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.122 INFO analysis - extract_test_information: /src/openbabel/external/rapidjson-1.1.0/test/unittest/istreamwrappertest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.122 INFO analysis - extract_test_information: /src/openbabel/external/rapidjson-1.1.0/test/unittest/regextest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.123 INFO analysis - extract_test_information: /src/openbabel/test/aromatest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.124 INFO analysis - extract_test_information: /src/openbabel/test/addhtest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.124 INFO analysis - extract_test_information: /src/openbabel/external/rapidjson-1.1.0/test/perftest/schematest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.124 INFO analysis - extract_test_information: /src/openbabel/test/atom.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.125 INFO analysis - extract_test_information: /usr/share/cmake-3.16/Modules/FindMPI/test_mpi.c Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.125 INFO analysis - extract_test_information: /workspace/oss-fuzz/projects/tinyxml2/xmltest2.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.126 INFO analysis - extract_test_information: /src/openbabel/test/internalcoord.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.126 INFO analysis - extract_test_information: /src/openbabel/test/charge_mmff94.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.126 INFO analysis - extract_test_information: /src/openbabel/test/squareplanartest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.126 INFO analysis - extract_test_information: /src/openbabel/test/maereadertest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.126 INFO analysis - extract_test_information: /src/openbabel/test/obmolbenchmark.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.127 INFO analysis - extract_test_information: /src/openbabel/external/rapidjson-1.1.0/test/unittest/allocatorstest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.128 INFO analysis - extract_test_information: /src/openbabel/test/tautomertest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.128 INFO analysis - extract_test_information: /workspace/oss-fuzz/projects/example/my-api-repo/do_stuff_unittest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.128 INFO analysis - extract_test_information: /src/openbabel/test/regressionstest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.129 INFO analysis - extract_test_information: /src/openbabel/test/ffmmff94.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.129 INFO analysis - extract_test_information: /src/openbabel/external/rapidjson-1.1.0/test/unittest/bigintegertest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.130 INFO analysis - extract_test_information: /src/openbabel/external/rapidjson-1.1.0/test/perftest/perftest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.130 INFO analysis - extract_test_information: /src/openbabel/test/ffgaff.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.131 INFO analysis - extract_test_information: /src/openbabel/test/smartstest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.131 INFO analysis - extract_test_information: /src/openbabel/external/rapidjson-1.1.0/test/unittest/readertest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.132 INFO analysis - extract_test_information: /src/openbabel/external/rapidjson-1.1.0/test/unittest/simdtest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.133 INFO analysis - extract_test_information: /src/openbabel/test/obtest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.133 INFO analysis - extract_test_information: /src/openbabel/external/rapidjson-1.1.0/test/unittest/encodedstreamtest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.134 INFO analysis - extract_test_information: /src/openbabel/test/periodictest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.134 INFO analysis - extract_test_information: /src/openbabel/test/lssrtest.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:27.134 INFO analysis - extract_test_information: /src/openbabel/test/smilesmatch.cpp Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:28.522 INFO debug_info - dump_debug_report: No such file: - Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:28.525 INFO debug_info - dump_debug_report: No such file: Type Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:28.528 INFO debug_info - dump_debug_report: No such file: _tree Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:30.729 INFO main - main: Ending fuzz introspector report generation Step #6 - "compile-libfuzzer-introspector-x86_64": 2024-09-07 10:21:30.729 INFO main - main: Ending fuzz introspector post-processing Finished Step #6 - "compile-libfuzzer-introspector-x86_64" Starting Step #7 Step #7: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #7: CommandException: 1 files/objects could not be removed. Finished Step #7 Starting Step #8 Step #8: Already have image (with digest): gcr.io/cloud-builders/gsutil Step #8: Copying file:///workspace/out/libfuzzer-introspector-x86_64/inspector/fuzzerLogFile-0-zSMLBrILto.data.yaml [Content-Type=application/octet-stream]... Step #8: / [0/625 files][ 0.0 B/ 1.8 GiB] 0% Done ==> NOTE: You are uploading one or more large file(s), which would run Step #8: significantly faster if you enable parallel composite uploads. This Step #8: feature can be enabled by editing the Step #8: "parallel_composite_upload_threshold" value in your .boto Step #8: configuration file. However, note that if you do this large files will Step #8: be uploaded as `composite objects Step #8: `_,which Step #8: means that any user who downloads such objects will need to have a Step #8: compiled crcmod installed (see "gsutil help crcmod"). This is because Step #8: without a compiled crcmod, computing checksums on composite objects is Step #8: so slow that gsutil disables downloads of composite objects. Step #8: Step #8: Copying file:///workspace/out/libfuzzer-introspector-x86_64/inspector/all_debug_info.json [Content-Type=application/json]... Step #8: / [0/625 files][ 0.0 B/ 1.8 GiB] 0% Done Copying file:///workspace/out/libfuzzer-introspector-x86_64/inspector/allFunctionsWithMain-12-fa37JncCHr.yaml [Content-Type=application/octet-stream]... Step #8: / [0/625 files][ 0.0 B/ 1.8 GiB] 0% Done Copying file:///workspace/out/libfuzzer-introspector-x86_64/inspector/fuzzerLogFile-0-zSMLBrILto.data.debug_all_functions [Content-Type=application/octet-stream]... Step #8: / [0/625 files][ 0.0 B/ 1.8 GiB] 0% Done Copying file:///workspace/out/libfuzzer-introspector-x86_64/inspector/fuzzerLogFile-0-zSMLBrILto.data.debug_all_globals [Content-Type=application/octet-stream]... Step #8: / [0/625 files][ 0.0 B/ 1.8 GiB] 0% Done Copying file:///workspace/out/libfuzzer-introspector-x86_64/inspector/all-friendly-debug-types.json [Content-Type=application/json]... Step #8: / [0/625 files][ 2.5 MiB/ 1.8 GiB] 0% Done Copying file:///workspace/out/libfuzzer-introspector-x86_64/inspector/calltree_view_0.html [Content-Type=text/html]... Step #8: / [0/625 files][ 2.5 MiB/ 1.8 GiB] 0% Done Copying file:///workspace/out/libfuzzer-introspector-x86_64/inspector/calltree_view_1.html [Content-Type=text/html]... Step #8: / [0/625 files][ 5.1 MiB/ 1.8 GiB] 0% Done Copying file:///workspace/out/libfuzzer-introspector-x86_64/inspector/fuzzerLogFile-0-U4gxYh7yPM.data [Content-Type=application/octet-stream]... Step #8: / [0/625 files][ 6.1 MiB/ 1.8 GiB] 0% Done Copying file:///workspace/out/libfuzzer-introspector-x86_64/inspector/allFunctionsWithMain-4-fa37JncCHr.yaml [Content-Type=application/octet-stream]... 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Finished Step #8 PUSH DONE