starting build "d3554e99-38b9-45ab-8ec5-eec137690759" FETCHSOURCE BUILD Starting Step #0 Step #0: Already have image (with digest): gcr.io/cloud-builders/git Step #0: Cloning into 'oss-fuzz'... Finished Step #0 Starting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c" Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Already have image (with digest): gcr.io/cloud-builders/docker Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Sending build context to Docker daemon 5.12kB Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Step 1/5 : FROM gcr.io/oss-fuzz-base/base-builder Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": latest: Pulling from oss-fuzz-base/base-builder Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": b549f31133a9: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cde73eda1675: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 9ab8fa1a1224: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 595ac4db79ee: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": d6662a434482: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8c1e8508a506: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 760d0b3e5670: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": d5f98576c68f: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cfb40a3ef9da: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": f39fec9b1d6d: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3d463233cf5c: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4a996b1c8221: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ab1308ee9b34: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3921b178a88d: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 69ef84a4446a: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3466e0438979: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": b17b3182a508: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 92c9e8d5d963: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4581be439ec0: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 068b0d7c9b3a: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 0526c0380ea5: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4ff4477285dd: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6ea302d03e86: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": f2b48ea4d117: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4f18d9dc5678: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6031f97bbed0: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cebd9caa4245: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 7180a5420452: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 9ec87d61cfb8: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8c8ebaa3b337: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 276751a5373a: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ff5cabec616c: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 94d4a3a0f393: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8ac244d4ef00: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ba30b798bc71: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 57ddf6d3a128: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3466e0438979: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6bc69ad35e5b: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 69ef84a4446a: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": c835ec7b4a6e: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": b17b3182a508: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cfb40a3ef9da: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8c1e8508a506: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": d5f98576c68f: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 92c9e8d5d963: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4581be439ec0: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": f39fec9b1d6d: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3d463233cf5c: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4a996b1c8221: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 760d0b3e5670: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": d6662a434482: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 595ac4db79ee: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 0526c0380ea5: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 068b0d7c9b3a: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4ff4477285dd: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6ea302d03e86: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": f2b48ea4d117: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 666de0e26624: Pulling fs layer Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4f18d9dc5678: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6031f97bbed0: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8c8ebaa3b337: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ab1308ee9b34: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cebd9caa4245: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 94d4a3a0f393: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 276751a5373a: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8ac244d4ef00: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 7180a5420452: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 57ddf6d3a128: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3921b178a88d: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ba30b798bc71: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ff5cabec616c: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6bc69ad35e5b: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 666de0e26624: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": c835ec7b4a6e: Waiting Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 9ab8fa1a1224: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 9ab8fa1a1224: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": b549f31133a9: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": b549f31133a9: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": d6662a434482: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": d6662a434482: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 595ac4db79ee: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 595ac4db79ee: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8c1e8508a506: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8c1e8508a506: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cde73eda1675: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cde73eda1675: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": d5f98576c68f: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": d5f98576c68f: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cfb40a3ef9da: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cfb40a3ef9da: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": b549f31133a9: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3d463233cf5c: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3d463233cf5c: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4a996b1c8221: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4a996b1c8221: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ab1308ee9b34: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3921b178a88d: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3921b178a88d: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 69ef84a4446a: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 69ef84a4446a: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": f39fec9b1d6d: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": f39fec9b1d6d: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3466e0438979: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3466e0438979: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": b17b3182a508: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": b17b3182a508: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 92c9e8d5d963: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 92c9e8d5d963: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4581be439ec0: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4581be439ec0: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 068b0d7c9b3a: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 068b0d7c9b3a: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 0526c0380ea5: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 0526c0380ea5: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4ff4477285dd: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4ff4477285dd: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6ea302d03e86: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6ea302d03e86: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 760d0b3e5670: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 760d0b3e5670: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": f2b48ea4d117: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4f18d9dc5678: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4f18d9dc5678: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6031f97bbed0: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6031f97bbed0: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cebd9caa4245: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cebd9caa4245: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 7180a5420452: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 7180a5420452: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 9ec87d61cfb8: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 9ec87d61cfb8: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8c8ebaa3b337: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8c8ebaa3b337: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 276751a5373a: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 276751a5373a: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ff5cabec616c: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ff5cabec616c: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 94d4a3a0f393: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 94d4a3a0f393: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8ac244d4ef00: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8ac244d4ef00: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cde73eda1675: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ba30b798bc71: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ba30b798bc71: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 9ab8fa1a1224: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": c835ec7b4a6e: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 57ddf6d3a128: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 57ddf6d3a128: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6bc69ad35e5b: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6bc69ad35e5b: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 666de0e26624: Verifying Checksum Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 666de0e26624: Download complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 595ac4db79ee: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": d6662a434482: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8c1e8508a506: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 760d0b3e5670: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": d5f98576c68f: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cfb40a3ef9da: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": f39fec9b1d6d: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3d463233cf5c: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4a996b1c8221: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ab1308ee9b34: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3921b178a88d: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 69ef84a4446a: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 3466e0438979: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": b17b3182a508: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 92c9e8d5d963: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4581be439ec0: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 068b0d7c9b3a: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 0526c0380ea5: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4ff4477285dd: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6ea302d03e86: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": f2b48ea4d117: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 4f18d9dc5678: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6031f97bbed0: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cebd9caa4245: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 7180a5420452: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 9ec87d61cfb8: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8c8ebaa3b337: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 276751a5373a: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ff5cabec616c: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 94d4a3a0f393: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 8ac244d4ef00: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ba30b798bc71: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 57ddf6d3a128: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 6bc69ad35e5b: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": c835ec7b4a6e: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 666de0e26624: Pull complete Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Digest: sha256:61dfe9b9aa5574ae1b64265fc71e73fb0b8fb5341e7d0d8296d4253ab428c10b Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-builder:latest Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ---> 293ca1e20d12 Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Step 2/5 : RUN apt-get update && apt install -y cmake Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ---> Running in fdb8c387efba Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Get:1 http://security.ubuntu.com/ubuntu focal-security InRelease [128 kB] Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Hit:2 http://archive.ubuntu.com/ubuntu focal InRelease Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Get:3 http://archive.ubuntu.com/ubuntu focal-updates InRelease [128 kB] Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Get:4 http://archive.ubuntu.com/ubuntu focal-backports InRelease [128 kB] Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Fetched 383 kB in 1s (699 kB/s) Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Reading package lists... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c":  Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Reading package lists... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Building dependency tree... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Reading state information... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": The following additional packages will be installed: Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Suggested packages: Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cmake-doc ninja-build lrzip Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": The following NEW packages will be installed: Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": cmake cmake-data libarchive13 libicu66 libjsoncpp1 librhash0 libuv1 libxml2 Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Need to get 15.0 MB of archives. Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": After this operation, 65.0 MB of additional disk space will be used. Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libicu66 amd64 66.1-2ubuntu2.1 [8515 kB] Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libxml2 amd64 2.9.10+dfsg-5ubuntu0.20.04.9 [641 kB] Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Get:3 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1 amd64 1.34.2-1ubuntu1.5 [80.9 kB] Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake-data all 3.16.3-1ubuntu1.20.04.1 [1613 kB] Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libarchive13 amd64 3.4.0-2ubuntu1.5 [327 kB] Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Get:6 http://archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Get:7 http://archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 cmake amd64 3.16.3-1ubuntu1.20.04.1 [3668 kB] Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": debconf: delaying package configuration, since apt-utils is not installed Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Fetched 15.0 MB in 1s (30.0 MB/s) Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Selecting previously unselected package libicu66:amd64. Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17397 files and directories currently installed.) Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Preparing to unpack .../0-libicu66_66.1-2ubuntu2.1_amd64.deb ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Unpacking libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Selecting previously unselected package libxml2:amd64. Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Preparing to unpack .../1-libxml2_2.9.10+dfsg-5ubuntu0.20.04.9_amd64.deb ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Unpacking libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.9) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Selecting previously unselected package libuv1:amd64. Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Preparing to unpack .../2-libuv1_1.34.2-1ubuntu1.5_amd64.deb ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Unpacking libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Selecting previously unselected package cmake-data. Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Preparing to unpack .../3-cmake-data_3.16.3-1ubuntu1.20.04.1_all.deb ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Unpacking cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Selecting previously unselected package libarchive13:amd64. Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Preparing to unpack .../4-libarchive13_3.4.0-2ubuntu1.5_amd64.deb ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Unpacking libarchive13:amd64 (3.4.0-2ubuntu1.5) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Selecting previously unselected package libjsoncpp1:amd64. Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Preparing to unpack .../5-libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Selecting previously unselected package librhash0:amd64. Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Preparing to unpack .../6-librhash0_1.3.9-1_amd64.deb ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Unpacking librhash0:amd64 (1.3.9-1) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Selecting previously unselected package cmake. Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Preparing to unpack .../7-cmake_3.16.3-1ubuntu1.20.04.1_amd64.deb ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Unpacking cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Setting up libicu66:amd64 (66.1-2ubuntu2.1) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Setting up libuv1:amd64 (1.34.2-1ubuntu1.5) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Setting up librhash0:amd64 (1.3.9-1) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Setting up cmake-data (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Setting up libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.9) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Setting up libarchive13:amd64 (3.4.0-2ubuntu1.5) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Setting up cmake (3.16.3-1ubuntu1.20.04.1) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Processing triggers for libc-bin (2.31-0ubuntu9.17) ... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Removing intermediate container fdb8c387efba Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ---> 94b3a6d1bed7 Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Step 3/5 : RUN git clone --depth 1 https://github.com/openbabel/openbabel.git Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ---> Running in a64f2a1921ec Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Cloning into 'openbabel'... Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Updating files: 37% (14160/37496) Updating files: 38% (14249/37496) Updating files: 39% (14624/37496) Updating files: 40% (14999/37496) Updating files: 41% (15374/37496) Updating files: 42% (15749/37496) Updating files: 43% (16124/37496) Updating files: 44% (16499/37496) Updating files: 45% (16874/37496) Updating files: 46% (17249/37496) Updating files: 47% (17624/37496) Updating files: 48% (17999/37496) Updating files: 49% (18374/37496) Updating files: 50% (18748/37496) Updating files: 51% (19123/37496) Updating files: 52% (19498/37496) Updating files: 53% (19873/37496) Updating files: 54% (20248/37496) Updating files: 55% (20623/37496) Updating files: 56% (20998/37496) Updating files: 57% (21373/37496) Updating files: 58% (21748/37496) Updating files: 59% (22123/37496) Updating files: 60% (22498/37496) Updating files: 61% (22873/37496) Updating files: 62% (23248/37496) Updating files: 63% (23623/37496) Updating files: 64% (23998/37496) Updating files: 65% (24373/37496) Updating files: 66% (24748/37496) Updating files: 67% (25123/37496) Updating files: 68% (25498/37496) Updating files: 69% (25873/37496) Updating files: 70% (26248/37496) Updating files: 71% (26623/37496) Updating files: 72% (26998/37496) Updating files: 73% (27373/37496) Updating files: 74% (27748/37496) Updating files: 75% (28122/37496) Updating files: 76% (28497/37496) Updating files: 77% (28872/37496) Updating files: 77% (29138/37496) Updating files: 78% (29247/37496) Updating files: 79% (29622/37496) Updating files: 80% (29997/37496) Updating files: 81% (30372/37496) Updating files: 82% (30747/37496) Updating files: 83% (31122/37496) Updating files: 84% (31497/37496) Updating files: 85% (31872/37496) Updating files: 86% (32247/37496) Updating files: 87% (32622/37496) Updating files: 88% (32997/37496) Updating files: 89% (33372/37496) Updating files: 90% (33747/37496) Updating files: 91% (34122/37496) Updating files: 92% (34497/37496) Updating files: 93% (34872/37496) Updating files: 94% (35247/37496) Updating files: 95% (35622/37496) Updating files: 96% (35997/37496) Updating files: 97% (36372/37496) Updating files: 98% (36747/37496) Updating files: 99% (37122/37496) Updating files: 100% (37496/37496) Updating files: 100% (37496/37496), done. Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Removing intermediate container a64f2a1921ec Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ---> d537d45d498a Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Step 4/5 : COPY build.sh $SRC Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ---> cce90a0a56c9 Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Step 5/5 : WORKDIR $SRC/openbabel Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ---> Running in 13ca7e7c1598 Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Removing intermediate container 13ca7e7c1598 Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": ---> adbf1b53c72b Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Successfully built adbf1b53c72b Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Successfully tagged gcr.io/oss-fuzz/openbabel:latest Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c": Successfully tagged us-central1-docker.pkg.dev/oss-fuzz/unsafe/openbabel:latest Finished Step #1 - "build-df522f30-4741-48b8-be9e-987454df2e6c" Starting Step #3 - "push-image" Starting Step #2 - "srcmap" Step #3 - "push-image": Already have image (with digest): gcr.io/cloud-builders/docker Step #2 - "srcmap": Already have image: gcr.io/oss-fuzz/openbabel Step #3 - "push-image": Using default tag: latest Step #3 - "push-image": The push refers to repository [us-central1-docker.pkg.dev/oss-fuzz/unsafe/openbabel] Step #3 - "push-image": 03efbeed5e45: Preparing Step #3 - "push-image": 19c070b12876: Preparing Step #3 - "push-image": 3629ab5189df: Preparing Step #3 - "push-image": ecb2d85dda6a: Preparing Step #3 - "push-image": 3ccd3cb433de: Preparing Step #3 - "push-image": 143649d062d2: Preparing Step #3 - "push-image": 5d5abb58c96f: Preparing Step #3 - "push-image": 08f3341100d1: Preparing Step #3 - "push-image": 9af681603487: Preparing Step #3 - "push-image": ad8d8e209dab: Preparing Step #3 - "push-image": 897ee090832e: Preparing Step #3 - "push-image": ee12dbebeb91: Preparing Step #3 - "push-image": 3056236b69b9: Preparing Step #3 - "push-image": ea5d906eddfd: Preparing Step #3 - "push-image": ebc9a6cbc86c: Preparing Step #3 - "push-image": f2f4ad975fd0: Preparing Step #3 - "push-image": 2477490ef793: Preparing Step #3 - "push-image": 9b5b17772262: Preparing Step #3 - "push-image": 1952b1a576f2: Preparing Step #3 - "push-image": 30a6dc091336: Preparing Step #3 - "push-image": 070183179dbd: Preparing Step #3 - "push-image": c46bf1ae1502: Preparing Step #3 - "push-image": 4bb71dcfd9bb: Preparing Step #3 - "push-image": 0e7ed94abb87: Preparing Step #3 - "push-image": 0e3a2862a34f: Preparing Step #3 - "push-image": 127e8e84f469: Preparing Step #3 - "push-image": 42bff69b4fd3: Preparing Step #3 - "push-image": 0531d39e8393: Preparing Step #3 - "push-image": ebc9a6cbc86c: Waiting Step #3 - "push-image": 547e4efe285c: Preparing Step #3 - "push-image": f2f4ad975fd0: Waiting Step #3 - "push-image": 643355dde8a0: Preparing Step #3 - "push-image": 2477490ef793: Waiting Step #3 - "push-image": 68f2354002fc: Preparing Step #3 - "push-image": 0bc7e97eb539: Preparing Step #3 - "push-image": db9a80588f58: Preparing Step #3 - "push-image": 11bba56cbd63: Preparing Step #3 - "push-image": 5b13f9540e06: Preparing Step #3 - "push-image": 42642dc83095: Preparing Step #3 - "push-image": 9b5b17772262: Waiting Step #3 - "push-image": 3cc16d1bc614: Preparing Step #3 - "push-image": 1952b1a576f2: Waiting Step #3 - "push-image": ecab1fe9f68c: Preparing Step #3 - "push-image": 9af681603487: Waiting Step #3 - "push-image": ad8d8e209dab: Waiting Step #3 - "push-image": 897ee090832e: Waiting Step #3 - "push-image": ee12dbebeb91: Waiting Step #3 - "push-image": 070183179dbd: Waiting Step #3 - "push-image": e0578921414e: Preparing Step #3 - "push-image": 29cd59c3da93: Preparing Step #3 - "push-image": c46bf1ae1502: Waiting Step #3 - "push-image": 3056236b69b9: Waiting Step #3 - "push-image": ea5d906eddfd: Waiting Step #3 - "push-image": 1f1159b099a8: Preparing Step #3 - "push-image": d543b8cad89e: Preparing Step #3 - "push-image": 4bb71dcfd9bb: Waiting Step #3 - "push-image": 0e7ed94abb87: Waiting Step #3 - "push-image": 0e3a2862a34f: Waiting Step #3 - "push-image": 3cc16d1bc614: Waiting Step #3 - "push-image": ecab1fe9f68c: Waiting Step #3 - "push-image": e0578921414e: Waiting Step #3 - "push-image": 29cd59c3da93: Waiting Step #3 - "push-image": 5d5abb58c96f: Waiting Step #3 - "push-image": 42642dc83095: Waiting Step #3 - "push-image": 1f1159b099a8: Waiting Step #3 - "push-image": 547e4efe285c: Waiting Step #3 - "push-image": 08f3341100d1: Waiting Step #3 - "push-image": d543b8cad89e: Waiting Step #3 - "push-image": 68f2354002fc: Waiting Step #3 - "push-image": 643355dde8a0: Waiting Step #3 - "push-image": 0bc7e97eb539: Waiting Step #3 - "push-image": 42bff69b4fd3: Waiting Step #3 - "push-image": db9a80588f58: Waiting Step #3 - "push-image": 0531d39e8393: Waiting Step #3 - "push-image": 143649d062d2: Waiting Step #3 - "push-image": 127e8e84f469: Waiting Step #3 - "push-image": ecb2d85dda6a: Layer already exists Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + SRCMAP=/tmp/filelDyzPL Step #2 - "srcmap": + echo '{}' Step #2 - "srcmap": + PATHS_TO_SCAN=/src Step #2 - "srcmap": + [[ c++ == \g\o ]] Step #2 - "srcmap": ++ find /src -name .git -type d Step #3 - "push-image": 3ccd3cb433de: Layer already exists Step #3 - "push-image": 143649d062d2: Layer already exists Step #2 - "srcmap": + for DOT_GIT_DIR in $(find $PATHS_TO_SCAN -name ".git" -type d) Step #2 - "srcmap": ++ dirname /src/openbabel/.git Step #2 - "srcmap": + GIT_DIR=/src/openbabel Step #2 - "srcmap": + cd /src/openbabel Step #2 - "srcmap": ++ git config --get remote.origin.url Step #3 - "push-image": 5d5abb58c96f: Layer already exists Step #2 - "srcmap": + GIT_URL=https://github.com/openbabel/openbabel.git Step #2 - "srcmap": ++ git rev-parse HEAD Step #2 - "srcmap": + GIT_REV=889c350feb179b43aa43985799910149d4eaa2bc Step #2 - "srcmap": + jq_inplace /tmp/filelDyzPL '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "889c350feb179b43aa43985799910149d4eaa2bc" }' Step #2 - "srcmap": ++ tempfile Step #2 - "srcmap": + F=/tmp/file5V8mib Step #2 - "srcmap": + cat /tmp/filelDyzPL Step #2 - "srcmap": + jq '."/src/openbabel" = { type: "git", url: "https://github.com/openbabel/openbabel.git", rev: "889c350feb179b43aa43985799910149d4eaa2bc" }' Step #3 - "push-image": 08f3341100d1: Layer already exists Step #2 - "srcmap": + mv /tmp/file5V8mib /tmp/filelDyzPL Step #2 - "srcmap": ++ find /src -name .svn -type d Step #3 - "push-image": 9af681603487: Layer already exists Step #3 - "push-image": ad8d8e209dab: Layer already exists Step #3 - "push-image": 897ee090832e: Layer already exists Step #2 - "srcmap": ++ find /src -name .hg -type d Step #3 - "push-image": ee12dbebeb91: Layer already exists Step #3 - "push-image": 03efbeed5e45: Pushed Step #3 - "push-image": 3056236b69b9: Layer already exists Step #2 - "srcmap": + '[' '' '!=' '' ']' Step #2 - "srcmap": + cat /tmp/filelDyzPL Step #2 - "srcmap": + rm /tmp/filelDyzPL Step #2 - "srcmap": { Step #2 - "srcmap": "/src/openbabel": { Step #2 - "srcmap": "type": "git", Step #2 - "srcmap": "url": "https://github.com/openbabel/openbabel.git", Step #2 - "srcmap": "rev": "889c350feb179b43aa43985799910149d4eaa2bc" Step #2 - "srcmap": } Step #2 - "srcmap": } Step #3 - "push-image": ea5d906eddfd: Layer already exists Step #3 - "push-image": ebc9a6cbc86c: Layer already exists Step #3 - "push-image": f2f4ad975fd0: Layer already exists Step #3 - "push-image": 2477490ef793: Layer already exists Step #3 - "push-image": 9b5b17772262: Layer already exists Step #3 - "push-image": 1952b1a576f2: Layer already exists Step #3 - "push-image": 30a6dc091336: Layer already exists Step #3 - "push-image": 070183179dbd: Layer already exists Step #3 - "push-image": c46bf1ae1502: Layer already exists Step #3 - "push-image": 4bb71dcfd9bb: Layer already exists Step #3 - "push-image": 0e3a2862a34f: Layer already exists Step #3 - "push-image": 0e7ed94abb87: Layer already exists Step #3 - "push-image": 0531d39e8393: Layer already exists Step #3 - "push-image": 42bff69b4fd3: Layer already exists Step #3 - "push-image": 127e8e84f469: Layer already exists Finished Step #2 - "srcmap" Step #3 - "push-image": 547e4efe285c: Layer already exists Step #3 - "push-image": 643355dde8a0: Layer already exists Step #3 - "push-image": 68f2354002fc: Layer already exists Step #3 - "push-image": 0bc7e97eb539: Layer already exists Step #3 - "push-image": 11bba56cbd63: Layer already exists Step #3 - "push-image": db9a80588f58: Layer already exists Step #3 - "push-image": 5b13f9540e06: Layer already exists Step #3 - "push-image": 3cc16d1bc614: Layer already exists Step #3 - "push-image": 42642dc83095: Layer already exists Step #3 - "push-image": ecab1fe9f68c: Layer already exists Step #3 - "push-image": 29cd59c3da93: Layer already exists Step #3 - "push-image": e0578921414e: Layer already exists Step #3 - "push-image": 1f1159b099a8: Layer already exists Step #3 - "push-image": 3629ab5189df: Pushed Step #3 - "push-image": d543b8cad89e: Pushed Step #3 - "push-image": 19c070b12876: Pushed Step #3 - "push-image": latest: digest: sha256:c0148e018021f750c2f1e728fec87afcc6f0dc0b04948e09f26077795298614c size: 9131 Finished Step #3 - "push-image" Starting Step #4 - "compile-afl-address-x86_64" Step #4 - "compile-afl-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #4 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #4 - "compile-afl-address-x86_64": vm.mmap_rnd_bits = 28 Step #4 - "compile-afl-address-x86_64": Copying precompiled AFL++ Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": AFL++ target compilation setup: Step #4 - "compile-afl-address-x86_64": AFL_IGNORE_UNKNOWN_ENVS=1 Step #4 - "compile-afl-address-x86_64": AFL_QUIET=1 Step #4 - "compile-afl-address-x86_64": AFL_IGNORE_PROBLEMS=1 Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": done. Step #4 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #4 - "compile-afl-address-x86_64": CC=/src/aflplusplus/afl-clang-fast Step #4 - "compile-afl-address-x86_64": CXX=/src/aflplusplus/afl-clang-fast++ Step #4 - "compile-afl-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope Step #4 - "compile-afl-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -stdlib=libc++ Step #4 - "compile-afl-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #4 - "compile-afl-address-x86_64": --------------------------------------------------------------- Step #4 - "compile-afl-address-x86_64": + mkdir build Step #4 - "compile-afl-address-x86_64": + cd build Step #4 - "compile-afl-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #4 - "compile-afl-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #4 - "compile-afl-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #4 - "compile-afl-address-x86_64": CMake. Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #4 - "compile-afl-address-x86_64": CMake that the project does not need compatibility with older versions. Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": -- The C compiler identification is Clang 18.1.8 Step #4 - "compile-afl-address-x86_64": -- The CXX compiler identification is Clang 18.1.8 Step #4 - "compile-afl-address-x86_64": -- Detecting C compiler ABI info Step #4 - "compile-afl-address-x86_64": -- Detecting C compiler ABI info - done Step #4 - "compile-afl-address-x86_64": -- Check for working C compiler: /src/aflplusplus/afl-clang-fast - skipped Step #4 - "compile-afl-address-x86_64": -- Detecting C compile features Step #4 - "compile-afl-address-x86_64": -- Detecting C compile features - done Step #4 - "compile-afl-address-x86_64": -- Detecting CXX compiler ABI info Step #4 - "compile-afl-address-x86_64": -- Detecting CXX compiler ABI info - done Step #4 - "compile-afl-address-x86_64": -- Check for working CXX compiler: /src/aflplusplus/afl-clang-fast++ - skipped Step #4 - "compile-afl-address-x86_64": -- Detecting CXX compile features Step #4 - "compile-afl-address-x86_64": -- Detecting CXX compile features - done Step #4 - "compile-afl-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #4 - "compile-afl-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #4 - "compile-afl-address-x86_64": of CMake. Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #4 - "compile-afl-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #4 - "compile-afl-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #4 - "compile-afl-address-x86_64": behavior and not rely on setting a policy to OLD. Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": -- Using included inchi library. Step #4 - "compile-afl-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #4 - "compile-afl-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #4 - "compile-afl-address-x86_64": libxml2 not found - disabling CML support! Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #4 - "compile-afl-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #4 - "compile-afl-address-x86_64": -- Looking for conio.h Step #4 - "compile-afl-address-x86_64": -- Looking for conio.h - not found Step #4 - "compile-afl-address-x86_64": -- Looking for sys/time.h Step #4 - "compile-afl-address-x86_64": -- Looking for sys/time.h - found Step #4 - "compile-afl-address-x86_64": -- Looking for time.h Step #4 - "compile-afl-address-x86_64": -- Looking for time.h - found Step #4 - "compile-afl-address-x86_64": -- Looking for strings.h Step #4 - "compile-afl-address-x86_64": -- Looking for strings.h - found Step #4 - "compile-afl-address-x86_64": -- Looking for regex.h Step #4 - "compile-afl-address-x86_64": -- Looking for regex.h - found Step #4 - "compile-afl-address-x86_64": -- Looking for C++ include sstream Step #4 - "compile-afl-address-x86_64": -- Looking for C++ include sstream - found Step #4 - "compile-afl-address-x86_64": -- Looking for rint Step #4 - "compile-afl-address-x86_64": -- Looking for rint - found Step #4 - "compile-afl-address-x86_64": -- Looking for snprintf Step #4 - "compile-afl-address-x86_64": -- Looking for snprintf - found Step #4 - "compile-afl-address-x86_64": -- Looking for sranddev Step #4 - "compile-afl-address-x86_64": -- Looking for sranddev - not found Step #4 - "compile-afl-address-x86_64": -- Looking for strcasecmp Step #4 - "compile-afl-address-x86_64": -- Looking for strcasecmp - found Step #4 - "compile-afl-address-x86_64": -- Looking for strncasecmp Step #4 - "compile-afl-address-x86_64": -- Looking for strncasecmp - found Step #4 - "compile-afl-address-x86_64": -- Looking for xdrstdio_create Step #4 - "compile-afl-address-x86_64": -- Looking for xdrstdio_create - found Step #4 - "compile-afl-address-x86_64": -- Looking for dlopen in dl Step #4 - "compile-afl-address-x86_64": -- Looking for dlopen in dl - found Step #4 - "compile-afl-address-x86_64": -- Looking for sys/types.h Step #4 - "compile-afl-address-x86_64": -- Looking for sys/types.h - found Step #4 - "compile-afl-address-x86_64": -- Looking for stdint.h Step #4 - "compile-afl-address-x86_64": -- Looking for stdint.h - found Step #4 - "compile-afl-address-x86_64": -- Looking for stddef.h Step #4 - "compile-afl-address-x86_64": -- Looking for stddef.h - found Step #4 - "compile-afl-address-x86_64": -- Check size of clock_t Step #4 - "compile-afl-address-x86_64": -- Check size of clock_t - done Step #4 - "compile-afl-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #4 - "compile-afl-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #4 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #4 - "compile-afl-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #4 - "compile-afl-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #4 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #4 - "compile-afl-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #4 - "compile-afl-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #4 - "compile-afl-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #4 - "compile-afl-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #4 - "compile-afl-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #4 - "compile-afl-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #4 - "compile-afl-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #4 - "compile-afl-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #4 - "compile-afl-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #4 - "compile-afl-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #4 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #4 - "compile-afl-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #4 - "compile-afl-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #4 - "compile-afl-address-x86_64": -- Found Threads: TRUE Step #4 - "compile-afl-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #4 - "compile-afl-address-x86_64": -- Looking for getopt Step #4 - "compile-afl-address-x86_64": -- Looking for getopt - found Step #4 - "compile-afl-address-x86_64": -- GUI will not be built Step #4 - "compile-afl-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #4 - "compile-afl-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #4 - "compile-afl-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #4 - "compile-afl-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": Call Stack (most recent call first): Step #4 - "compile-afl-address-x86_64": test/CMakeLists.txt:233 (include) Step #4 - "compile-afl-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.10.14") Step #4 - "compile-afl-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #4 - "compile-afl-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #4 - "compile-afl-address-x86_64": CMake. Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #4 - "compile-afl-address-x86_64": CMake that the project does not need compatibility with older versions. Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": -- Configuring done (6.1s) Step #4 - "compile-afl-address-x86_64": -- Generating done (0.1s) Step #4 - "compile-afl-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #4 - "compile-afl-address-x86_64": ++ nproc Step #4 - "compile-afl-address-x86_64": + make -j 32 Step #4 - "compile-afl-address-x86_64": [ 0%] Generating bondtyp.h Step #4 - "compile-afl-address-x86_64": [ 0%] Generating atomtyp.h Step #4 - "compile-afl-address-x86_64": [ 1%] Generating phmodeldata.h Step #4 - "compile-afl-address-x86_64": [ 1%] Generating resdata.h Step #4 - "compile-afl-address-x86_64": [ 1%] Generating torlib.h Step #4 - "compile-afl-address-x86_64": [ 1%] Generating types.h Step #4 - "compile-afl-address-x86_64": [ 1%] Generating atomizationenergies.h Step #4 - "compile-afl-address-x86_64": [ 2%] Generating ringtyp.h Step #4 - "compile-afl-address-x86_64": [ 2%] Generating spacegroups.h Step #4 - "compile-afl-address-x86_64": [ 2%] Built target data_headers Step #4 - "compile-afl-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #4 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #4 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #4 - "compile-afl-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #4 - "compile-afl-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #4 - "compile-afl-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #4 - "compile-afl-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #4 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #4 - "compile-afl-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #4 - 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"compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #4 - "compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #4 - "compile-afl-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #4 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #4 - "compile-afl-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #4 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #4 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #4 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #4 - "compile-afl-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #4 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #4 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #4 - "compile-afl-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #4 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #4 - "compile-afl-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #4 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 82 | _ival=nullptr; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #4 - "compile-afl-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 118 | if (_ival) delete [] _ival; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 1523 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 1539 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 1572 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 359 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 361 | else if (bond2 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 430 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 432 | else if (bond2 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 434 | else if (bond3 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 450 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 452 | else if (bond2 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Us/src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": e 1180 | rl.SetFixAt oms(fixed); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": ve/src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 633ct | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:or3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 454 | else if (bond3 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vecto/src/openbabel/src/forcefield.cpp:1213:33r:3::IsA pprox(warning: ) in'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": stead." 1213) Step #4 - "compile-afl-address-x86_64": | rotorKeys.Ad dR| otor ^(roto Step #4 - "compile-afl-address-x86_64": r->G/src/openbabel/build/include/openbabel/babelconfig.h:e38t:R38e:s olution().size()); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #d/src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": efine OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 469 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 471 | else if (bond2 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 473 | else if (bond3 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_/src/openbabel/src/forcefield.cppDEPRECATED:1372_M:SG("32Use v:ector3:: warning: I'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1372 | for (j = s0; j GetResolution().size(); jr++) o{ // Foxr each (rotor position Step #4 - "compile-afl-address-x86_64": ) |  ^ Step #4 - "compile-afl-address-x86_64": i/src/openbabel/include/openbabel/rotor.h:449:5:nstead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38: 38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64":  38 | note: #define OB_DEP'GetResolution' has been explicitly marked deprecated hereRECATED_MSG(msg Step #4 - "compile-afl-address-x86_64": ) [[ deprecat449ed(m | sg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64":  OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 494 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 496 | else if /src/openbabel/src/forcefield.cpp:1444:8:(bo nd2warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": = =1444 VZero) | rl.SetFixAtoms(fixed); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsAppro/src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.hx:(38): 38i:n stenote: adexpanded from macro 'OB_DEPRECATED_MSG'." Step #4 - "compile-afl-address-x86_64": ) Step #4 - "compile-afl-address-x86_64": 38 | |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": #define OB_DEPRECA/src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]T Step #4 - "compile-afl-address-x86_64": ED_M S498G | ( m s g ) [ [ d e p r else if (bond3 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use evecctor3::IsAppraotxe(d)( misngs)t]e]ad Step #4 - "compile-afl-address-x86_64": . "| ) ^ Step #4 - "compile-afl-address-x86_64": | Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp ^ Step #4 - "compile-afl-address-x86_64": :/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: 1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 1622 | 38 | #de rl.SetFfiixne OB_DEPRECAtATEoDm_sM(SfGi(xmesdg)); [ Step #4 - "compile-afl-address-x86_64": [ d| ep ^r Step #4 - "compile-afl-address-x86_64": ecated(ms/src/openbabel/include/openbabel/rotor.hg):]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1635 | combinations *= rotor->GetResolution().size(); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 514 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG'/src/openbabel/src/forcefield.cpp Step #4 - "compile-afl-address-x86_64": :1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1685 | for (uns 38i | gned int j = 0; j < rotor-> #GdetResolution().efisneize(); j++) { Step #4 - "compile-afl-address-x86_64": OB _DEPRE|  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5CATED_MSG(ms: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATEDg) [[depr_MSG("See GetTorsionValues()")ecat Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATEeD_MSG(msg) [[depdrecated(msg)]] Step #4 - "compile-afl-address-x86_64": (|  ^ Step #4 - "compile-afl-address-x86_64": msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1712 | for (unsigned int j = 0; j < /src/openbabel/src/builder.cpp:516:28: rotor->Gwarning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]etResol Step #4 - "compile-afl-address-x86_64": 516 | ution() .size(); els j++) {e if (b Step #4 - "compile-afl-address-x86_64": |  ^ond2 == Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5VZero) Step #4 - "compile-afl-address-x86_64": : note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449|  ^ Step #4 - "compile-afl-address-x86_64":  | /src/openbabel/include/openbabel/math/vector3.h:273:5:  note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | O OB_DEPRB_DEPREECATEDCATED_MSG("Use _MSG("Svector3ee GetTo::IsApprsionValrox() insuetead.")s( Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": )") Step #4 - "compile-afl-address-x86_64": | /src/openbabel/build/include/openbabel/babelconfig.h ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38:38: :38: note: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64":  38 | expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #defi #define OB_Dne OB_DEPRECATEEPRECATEDD_MSG(msg_MSG(ms) [[deprg) [[deecated(precatedmsg)]](msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 518 | /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]  Step #4 - "compile-afl-address-x86_64": 1719 | else i for f (bond(unsign3 == VZed int ero) Step #4 - "compile-afl-address-x86_64": j = 0; j |  ^ Step #4 - "compile-afl-address-x86_64": </src/openbabel/include/openbabel/math/vector3.h:273:5:  ronote: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": t 273 | or->GetROB_DEPRECATED_MSG("Use veesolution().size(); j++) { Step #4 - "compile-afl-address-x86_64": ctor3::I |  ^ Step #4 - "compile-afl-address-x86_64": s/src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()")A Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38p: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #defineprox() in OB_DEPRECATED_MSG(msstead.")g) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64":  Step #4 - "compile-afl-address-x86_64": | /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1720 | ^ if (Is Step #4 - "compile-afl-address-x86_64": Near(worstE, bestE, 1.0e-3)) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: 3: expanded from macro 'OB_DEPRECATED_MSG'note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38 Step #4 - "compile-afl-address-x86_64": 38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | # | defi ne OB_DEPRECATED_M SG(m #defisg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": ne OB_DE/src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1721 | weigPRECATEDh_t = 1 /MSG(m rotor->GetResolution().size(sg);) [[dep Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": recated( 449 | OB_DEPRECAmsg)]] Step #4 - "compile-afl-address-x86_64": TED_MSG("See GetTorsionValues() ") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: | note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRE ^CATED_MSG(msg) [[de Step #4 - "compile-afl-address-x86_64": precated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 520 | else if (bond4 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_M/src/openbabel/src/forcefield.cpp:1761:45: SG("Use vector3::IsApprwarning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": o 1761x() instea | d.") Step #4 - "compile-afl-address-x86_64": for (unsigned int j = 0; j < roto|  ^ Step #4 - "compile-afl-address-x86_64": r/src/openbabel/build/include/openbabel/babelconfig.h:-38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | > GetR e #defisolutne ionO().size()B_D;EPRECAT EDj++) _M{ Step #4 - "compile-afl-address-x86_64": SG|  ^ Step #4 - "compile-afl-address-x86_64": (msg) /src/openbabel/include/openbabel/rotor.h[[:de449p:5r: note: ecat'GetResolution' has been explicitly marked deprecated hereed Step #4 - "compile-afl-address-x86_64": 449 | (msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64":  OB_DEPRECATED_MSG("See GetTorsionValues()")/src/openbabel/src/builder.cpp:533 Step #4 - "compile-afl-address-x86_64": :23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 533 | |  ^ Step #4 - "compile-afl-address-x86_64":  i/src/openbabel/build/include/openbabel/babelconfig.h:38f (:38: bonote: ndexpanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h38 | :273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB #d_DEPRECATED_MSG("efUse vector3::IsineApprox() instead.") Step #4 - "compile-afl-address-x86_64": OB_D|  ^ Step #4 - "compile-afl-address-x86_64": E/src/openbabel/build/include/openbabel/babelconfig.h:PR38:E38:CATE D_MSnote: G(msgexpanded from macro 'OB_DEPRECATED_MSG') [[d Step #4 - "compile-afl-address-x86_64": epr38 | #define OecB_DEPRECATED_MateSGd(m(ms[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #4 - "compile-afl-address-x86_64": gs)g)] [] Step #4 - "compile-afl-address-x86_64": [d|  ^ep Step #4 - "compile-afl-address-x86_64": recated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 535 | else if (bond2 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 537 | else if (bond3 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 539 | else if (bond4 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 564 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED/src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2788 | if (atom->GetVector() != VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^_M Step #4 - "compile-afl-address-x86_64": SG("Use v/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": ector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2803 | if (!hasX &/src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 566 | & !IsNearZero(atom->x())) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64":  else if/src/openbabel/include/openbabel/obutil.h :(197b:ond2 ==3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": VZ 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": ero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:/src/openbabel/src/forcefield.cpp273::24205::9 : note: warning: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 273 | 2420 | O B _iDfE P(RIEsCNAeTaErDZ_eMrSoG((s"cUaslee )v)e c{to Step #4 - "compile-afl-address-x86_64": r 3| :: ^I Step #4 - "compile-afl-address-x86_64": sApp/src/openbabel/src/mol.cpp:2805/src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECr:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2805o | if (!hasY && !IsNearZero(atom->y())) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": x() insteaAdT.E"D) Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2826:23 : warning: |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2826| | :38:38:  ^ Step #4 - "compile-afl-address-x86_64":  /src/openbabel/build/include/openbabel/babelconfig.h if (!hasX:37:29: note: ¬e: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | &expanded from macro 'OB_DEPRECATED'  Step #4 - "compile-afl-address-x86_64": ! #Isd37Nee | fa i rn Zee #rOdoBe(_faDitEnoPemR -EO>CBxA_(TD)EE)D)P_RME Step #4 - "compile-afl-address-x86_64": SC GA| (msgTED [[deprecated] ^ Step #4 - "compile-afl-address-x86_64": ) [[]dep Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.hr :e| 197c:a ^3 Step #4 - "compile-afl-address-x86_64": t:e d(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: /src/openbabel/src/builder.cpp:568:28: warning: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 568 | else if (bond3 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsAppro/src/openbabel/src/forcefield.cpp:2539:11: x() instea #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2828 | if (!hasY && !Id.") Step #4 - "compile-afl-address-x86_64": | s ^N Step #4 - "compile-afl-address-x86_64": earZ/src/openbabel/build/include/openbabel/babelconfig.he:r38o:(38a:t om-note: >yexpanded from macro 'OB_DEPRECATED_MSG'()) Step #4 - "compile-afl-address-x86_64": )  Step #4 - "compile-afl-address-x86_64": 38| |  ^ Step #4 - "compile-afl-address-x86_64":  #/src/openbabel/include/openbabel/obutil.h:197d:e3f:i ne note: OB'IsNearZero' has been explicitly marked deprecated here_D Step #4 - "compile-afl-address-x86_64": EP197R | E C AOTBE_DD_EMPSREGC(AmsTEgD) Step #4 - "compile-afl-address-x86_64": [ [| de ^p Step #4 - "compile-afl-address-x86_64": reca/src/openbabel/build/include/openbabel/babelconfig.ht:ed37(:m29s:g )]]note:  Step #4 - "compile-afl-address-x86_64": expanded from macro 'OB_DEPRECATED' | Step #4 - "compile-afl-address-x86_64":  ^ Step #4 - "compile-afl-address-x86_64": 37 |  #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2830 | if (!hasZ && !Is/src/openbabel/src/builder.cppN:e570a:r28Zer:o (atwarning: om->'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]z())) Step #4 - "compile-afl-address-x86_64": |  Step #4 - "compile-afl-address-x86_64": 570 | ^ Step #4 - "compile-afl-address-x86_64":  /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED else if (bond4 == VZero) Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64": |  ^| Step #4 - "compile-afl-address-x86_64":  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37/src/openbabel/include/openbabel/math/vector3.h::29273:: 5: note: expanded from macro 'OB_DEPRECATED'note: Step #4 - "compile-afl-address-x86_64":  'operator==' has been explicitly marked deprecated here37 Step #4 - "compile-afl-address-x86_64": | 273 | # d e fOiBn_eD EOPBR_EDwarning: CEAPT'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]REE Step #4 - "compile-afl-address-x86_64": DC_ AMT2539SE | GD ( "[ [U sd ee pirvfee cct(atoIesrd3Ne:]a]:rI( Step #4 - "compile-afl-address-x86_64": s eA_| pnp ^2r Step #4 - "compile-afl-address-x86_64": ,o x(e_)n 1i,n 1s.t0eea-d3.)")) { Step #4 - "compile-afl-address-x86_64":  | Step #4 - "compile-afl-address-x86_64":  ^| Step #4 - "compile-afl-address-x86_64":  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: /src/openbabel/include/openbabel/obutil.h:189:expanded from macro 'OB_DEPRECATED_MSG'3: Step #4 - "compile-afl-address-x86_64": note: 'IsNear' has been explicitly marked deprecated here38 | Step #4 - "compile-afl-address-x86_64": 189 | # d OeBf_inDeE PROEBC_DAETPEDR_EMCSAGT(ED"_UMseS G(msg) [[dIsApprox()eprecated( instead")msg Step #4 - "compile-afl-address-x86_64": ) ]| ] ^ Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64":  |  ^/src/openbabel/build/include/openbabel/babelconfig.h Step #4 - "compile-afl-address-x86_64": :38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 572 | else if (bond5 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 660 | if (bond1 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead/src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]." Step #4 - "compile-afl-address-x86_64": ) Step #4 - "compile-afl-address-x86_64": | 2657 | ^ Step #4 - "compile-afl-address-x86_64":  /src/openbabel/build/include/openbabel/babelconfig.h:38:38: if (IsNear(e_n2, e_n1, 1.0e-7)note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": ) 38 | { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: #def'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": i 189ne OB | OB_DEPR_DEPECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": RECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2725 | if (IsNear(e/src/openbabel/src/builder.cpp:718:23_n2, e_n1, 1.0e-7)) { Step #4 - "compile-afl-address-x86_64": : warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": | 718 | ^ Step #4 - "compile-afl-address-x86_64":  /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note:  expanded from macro 'OB_DEPRECATED_MSG' if ( Step #4 - "compile-afl-address-x86_64": b ond381 | = = V#Zdeerfion)e OB Step #4 - "compile-afl-address-x86_64": _ D| EP ^R Step #4 - "compile-afl-address-x86_64": ECAT/src/openbabel/include/openbabel/math/vector3.hED:_273:M5S:G (mnote: sg'operator==' has been explicitly marked deprecated here) Step #4 - "compile-afl-address-x86_64": [ [d273e | p r e cated OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3252 | /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 720 | else if (bond2 == VZero) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": (msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64":  if ((*ringit)->PathSize() == 5) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:3274:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3274 | else if ((*ringit)->PathSize() == 6) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 'PathSize' has been explicitly marked deprecated here 2838 Step #4 - "compile-afl-address-x86_64": | if (Is 65 | Near(e_ n2, _e_n1, _ecoOB_DEPRECATED_MSG("Use Size() innv) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": stead")/src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DE Step #4 - "compile-afl-address-x86_64": P | RECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | # ^d Step #4 - "compile-afl-address-x86_64": efine OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3735 | if (IsNearZero(length)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3802 | if (IsNearZero(length)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprec/src/openbabel/src/builder.cppa:t1427e:d17]:]  Step #4 - "compile-afl-address-x86_64":  warning: |  ^'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": Step #4 - "compile-afl-address-x86_64":  1427 | if (bond1 == VZero) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #4 - "compile-afl-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #4 - "compile-afl-address-x86_64": 2 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #4 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #4 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #4 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #4 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #4 - "compile-afl-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #4 - "compile-afl-address-x86_64": 3 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #4 - "compile-afl-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #4 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #4 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #4 - "compile-afl-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #4 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #4 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #4 - "compile-afl-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 452 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 443 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 355 | rotor->SetDelta(delta); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #4 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #4 - "compile-afl-address-x86_64": 3 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #4 - "compile-afl-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 589 | gd->GetOriginVector(origin); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 5 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #4 - "compile-afl-address-x86_64": 34 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #4 - "compile-afl-address-x86_64": 310 | else if (vs[0][0] == '2') Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #4 - "compile-afl-address-x86_64": 51 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #4 - "compile-afl-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #4 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #4 - "compile-afl-address-x86_64": 911 | switch(pRD->ReactionType) Step #4 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #4 - "compile-afl-address-x86_64": 990 | switch(pRD->ReactionType) Step #4 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #4 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #4 - "compile-afl-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #4 - "compile-afl-address-x86_64": 3 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #4 - "compile-afl-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #4 - "compile-afl-address-x86_64": |  ~~~~ ^~~~ Step #4 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #4 - "compile-afl-address-x86_64": 9 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 275 | gd->GetOriginVector(origin); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 287 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #4 - "compile-afl-address-x86_64": 158 | switch (chirality) { Step #4 - "compile-afl-address-x86_64": |  ^~~~~~~~~ Step #4 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #4 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #4 - "compile-afl-address-x86_64": 2 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #4 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #4 - "compile-afl-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #4 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #4 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #4 - "compile-afl-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #4 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #4 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #4 - "compile-afl-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #4 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #4 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #4 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #4 - "compile-afl-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #4 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #4 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #4 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #4 - "compile-afl-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #4 - "compile-afl-address-x86_64": |  ~ ^~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #4 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #4 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #4 - "compile-afl-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #4 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #4 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #4 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #4 - "compile-afl-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #4 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #4 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #4 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #4 - "compile-afl-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #4 - "compile-afl-address-x86_64": |  ~~ ^~~~~~ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #4 - "compile-afl-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #4 - "compile-afl-address-x86_64": |  ~~~~~~~^~ Step #4 - "compile-afl-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #4 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #4 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #4 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #4 - "compile-afl-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #4 - "compile-afl-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #4 - "compile-afl-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #4 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #4 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #4 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #4 - "compile-afl-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #4 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #4 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #4 - "compile-afl-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #4 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #4 - "compile-afl-address-x86_64": 2 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #4 - "compile-afl-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #4 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 1523 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 6 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #4 - "compile-afl-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #4 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #4 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #4 - "compile-afl-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #4 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #4 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #4 - "compile-afl-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #4 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #4 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #4 - "compile-afl-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #4 - "compile-afl-address-x86_64": 2 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #4 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #4 - "compile-afl-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #4 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #4 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #4 - "compile-afl-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #4 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #4 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #4 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #4 - "compile-afl-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #4 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #4 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #4 - "compile-afl-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #4 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #4 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #4 - "compile-afl-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #4 - "compile-afl-address-x86_64": |  ~~~~~~~~~~~ ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #4 - "compile-afl-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #4 - "compile-afl-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 9 warnings generated. Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 197 | OB_DEPRECATED Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #4 - "compile-afl-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": 4 warnings generated. Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": 1 warning generated. Step #4 - "compile-afl-address-x86_64": 2 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #4 - "compile-afl-address-x86_64": [ 75%] Built target openbabel Step #4 - "compile-afl-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #4 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #4 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #4 - "compile-afl-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #4 - "compile-afl-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #4 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #4 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #4 - "compile-afl-address-x86_64": 255 | // / \  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #4 - "compile-afl-address-x86_64": 270 | // / \  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #4 - "compile-afl-address-x86_64": 285 | // \  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #4 - "compile-afl-address-x86_64": 287 | // \  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #4 - "compile-afl-address-x86_64": 310 | // \  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #4 - "compile-afl-address-x86_64": 432 | // \  Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetC/src/openbabel/test/stereotest.cppo:or102di:n13a:t es(warning: )),5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] 0.0 Step #4 - "compile-afl-address-x86_64": , 1.0))102; |  Step #4 - "compile-afl-address-x86_64": | sw ^i Step #4 - "compile-afl-address-x86_64": tch (/src/openbabel/include/openbabel/obutil.hu:189n:its.at(i).type) { Step #4 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #4 - "compile-afl-address-x86_64": 3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #4 - "compile-afl-address-x86_64": 132 | switch (units.at(i).type) { Step #4 - "compile-afl-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #4 - "compile-afl-address-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #4 - "compile-afl-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #4 - "compile-afl-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #4 - "compile-afl-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #4 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #4 - "compile-afl-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #4 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #4 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #4 - "compile-afl-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #4 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 92%] Linking CXX executable ../bin/fuzz_convert Step #4 - "compile-afl-address-x86_64": [ 92%] Linking CXX executable ../bin/obabel Step #4 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #4 - "compile-afl-address-x86_64": 3 warnings generated. Step #4 - "compile-afl-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #4 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #4 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #4 - "compile-afl-address-x86_64": [ 93%] Built target fuzz_obconversion_sdf Step #4 - "compile-afl-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #4 - "compile-afl-address-x86_64": [ 93%] Built target fuzz_obconversion_smiles Step #4 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #4 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #4 - "compile-afl-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #4 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #4 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #4 - "compile-afl-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #4 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #4 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #4 - "compile-afl-address-x86_64": [ 96%] Built target roundtrip Step #4 - "compile-afl-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #4 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #4 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #4 - "compile-afl-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #4 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #4 - "compile-afl-address-x86_64": [ 98%] Built target fuzz_convert Step #4 - "compile-afl-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #4 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #4 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #4 - "compile-afl-address-x86_64": [ 99%] Built target obabel Step #4 - "compile-afl-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 190 | x = m2.Get( i, j ); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) );/src/openbabel/test/logp_psa.cpp:78:7: warning:  Step #4 - "compile-afl-address-x86_64": 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] | Step #4 - "compile-afl-address-x86_64":  ^ Step #4 - "compile-afl-address-x86_64":  78 | i/src/openbabel/include/openbabel/math/matrix3x3.hf:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | (IsNear(logP , 1.4008)) { // value from JOELib2 Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 85 | if (IsNear ( p sOB_DEPRECAa ,TE 29.46)) { // valuD_MSG("use the constant operae from JOELib2 Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATEtor() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": D_MSG("Use IsA/src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 346 | VERIFY( IpsNegligpirbolxe(() einstead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": igenvals[j] - Diagon/src/openbabel/build/include/openbabel/babelconfig.h:38:38: al.Genote: expanded from macro 'OB_DEPRECATED_MSG't Step #4 - "compile-afl-address-x86_64": (j,j) 38 | , D iagon#define OB_al.GDEPetR(2ECA,2) ) ); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": T E| D_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64":  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] O Step #4 - "compile-afl-address-x86_64": B_ 95 | iDEPRECATf (IsNeEarD(_lMoSgGP(,"use the non-constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 2/src/openbabel/build/include/openbabel/babelconfig.h.5815)) { // Valu:38e :fr38om JO: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": E38L | i b 2 Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: #denote: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": f 38 | ine #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64":  OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-co/src/openbabel/test/logp_psa.cpp:102:n7s:t antwarning: op'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]er Step #4 - "compile-afl-address-x86_64": ator (102) | i nisft (IsNeare(psa, 0.0)) { // Value fad") Step #4 - "compile-afl-address-x86_64": rom JOELib2 Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64":  /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": | 38 ^ Step #4 - "compile-afl-address-x86_64":  |  /src/openbabel/include/openbabel/obutil.h : 189 #d:efin3:e OB_DEP RECATED_MSG(msg) [[denote: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": p 189 | OB_DEPrecatRECATEeDd(msg_)]M]SG( Step #4 - "compile-afl-address-x86_64": " U| se ^ Step #4 - "compile-afl-address-x86_64": IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:361:/src/openbabel/build/include/openbabel/babelconfig.h20::38 :38: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations]note: Step #4 - "compile-afl-address-x86_64":  expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 361 | 38 | r nd .#Sdeetf(0i,n2e, OrBn_dD.EGPeRt(2,0)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": ECATED_M/src/openbabel/include/openbabel/math/matrix3x3.hS:G171(:m7s:g ) [note: [deprecated'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPREC(msg)]] Step #4 - "compile-afl-address-x86_64": A| TE ^D Step #4 - "compile-afl-address-x86_64": _MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #defin/src/openbabel/test/logp_psa.cppe O:112:B_DE7P:R ECATED_MSG(warning: msg) [[deprecate'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]d( Step #4 - "compile-afl-address-x86_64": msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64":  112 | if (IsNe/src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": ar362(logP | , 2 .0264)) { //rnd. SJeOELti(1,b22, r n=d 1.9.534, more H adGet(2,1ded on N Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": | )); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() ins ^ Step #4 - "compile-afl-address-x86_64": tead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #de:f38i:n38e: OB_DEPRECATED_MSG(msg) note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": [[deprecated(ms 38 | g)] #de] Step #4 - "compile-afl-address-x86_64": fi ne OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() i/src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[dneprescatted(msg)]e] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": ad") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #4 - "compile-afl-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #4 - "compile-afl-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #4 - "compile-afl-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #4 - "compile-afl-address-x86_64": |  ^ Step #4 - "compile-afl-address-x86_64": 6 warnings generated. Step #4 - "compile-afl-address-x86_64": 17 warnings generated. Step #4 - "compile-afl-address-x86_64": 6 warnings generated. Step #4 - "compile-afl-address-x86_64": 2 warnings generated. Step #4 - "compile-afl-address-x86_64": 24 warnings generated. Step #4 - "compile-afl-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #4 - "compile-afl-address-x86_64": [100%] Built target test_runner Step #4 - "compile-afl-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/afl-address-x86_64/ Finished Step #4 - "compile-afl-address-x86_64" Starting Step #5 - "build-check-afl-address-x86_64" Step #5 - "build-check-afl-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #5 - "build-check-afl-address-x86_64": Unable to find image 'gcr.io/oss-fuzz-base/base-runner:latest' locally Step #5 - "build-check-afl-address-x86_64": latest: Pulling from oss-fuzz-base/base-runner Step #5 - "build-check-afl-address-x86_64": b549f31133a9: Already exists Step #5 - "build-check-afl-address-x86_64": cde73eda1675: Already exists Step #5 - "build-check-afl-address-x86_64": 9ab8fa1a1224: Already exists Step #5 - "build-check-afl-address-x86_64": 7fb944c2626b: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 16b8b8e7a735: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 30ac2690114d: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 917802590ade: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 4efce3683cab: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": fe71553d90ec: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": c3cd171d66f5: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": fbf4221b088e: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 1c62bf06aeba: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 0fed6a8e0990: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 0dcc98450cb9: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 602ff4a86beb: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 1e1d839208c0: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": d4af253576e2: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 416b414939dc: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": f5d61c14d73a: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 32c6b9b3a355: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 731ef4034f36: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 922b1ab1d770: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": e99995572309: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 373eaec1aabb: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": a868ce8f89db: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 785d944e1d0d: Pulling fs layer Step #5 - "build-check-afl-address-x86_64": 4efce3683cab: Waiting Step #5 - "build-check-afl-address-x86_64": fe71553d90ec: Waiting Step #5 - "build-check-afl-address-x86_64": c3cd171d66f5: Waiting Step #5 - "build-check-afl-address-x86_64": fbf4221b088e: Waiting Step #5 - "build-check-afl-address-x86_64": 1c62bf06aeba: Waiting Step #5 - "build-check-afl-address-x86_64": 731ef4034f36: Waiting Step #5 - "build-check-afl-address-x86_64": 922b1ab1d770: Waiting Step #5 - "build-check-afl-address-x86_64": e99995572309: Waiting Step #5 - "build-check-afl-address-x86_64": 0fed6a8e0990: Waiting Step #5 - "build-check-afl-address-x86_64": 373eaec1aabb: Waiting Step #5 - "build-check-afl-address-x86_64": 0dcc98450cb9: Waiting Step #5 - "build-check-afl-address-x86_64": 602ff4a86beb: Waiting Step #5 - "build-check-afl-address-x86_64": a868ce8f89db: Waiting Step #5 - "build-check-afl-address-x86_64": 785d944e1d0d: Waiting Step #5 - "build-check-afl-address-x86_64": 1e1d839208c0: Waiting Step #5 - "build-check-afl-address-x86_64": d4af253576e2: Waiting Step #5 - "build-check-afl-address-x86_64": 416b414939dc: Waiting Step #5 - "build-check-afl-address-x86_64": 917802590ade: Waiting Step #5 - "build-check-afl-address-x86_64": f5d61c14d73a: Waiting Step #5 - "build-check-afl-address-x86_64": 32c6b9b3a355: Waiting Step #5 - "build-check-afl-address-x86_64": 30ac2690114d: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 30ac2690114d: Download complete Step #5 - "build-check-afl-address-x86_64": 7fb944c2626b: Download complete Step #5 - "build-check-afl-address-x86_64": 16b8b8e7a735: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 16b8b8e7a735: Download complete Step #5 - "build-check-afl-address-x86_64": 4efce3683cab: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 4efce3683cab: Download complete Step #5 - "build-check-afl-address-x86_64": 7fb944c2626b: Pull complete Step #5 - "build-check-afl-address-x86_64": 917802590ade: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 917802590ade: Download complete Step #5 - "build-check-afl-address-x86_64": c3cd171d66f5: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": c3cd171d66f5: Download complete Step #5 - "build-check-afl-address-x86_64": fbf4221b088e: Download complete Step #5 - "build-check-afl-address-x86_64": 1c62bf06aeba: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 1c62bf06aeba: Download complete Step #5 - "build-check-afl-address-x86_64": 16b8b8e7a735: Pull complete Step #5 - "build-check-afl-address-x86_64": fe71553d90ec: Download complete Step #5 - "build-check-afl-address-x86_64": 30ac2690114d: Pull complete Step #5 - "build-check-afl-address-x86_64": 0dcc98450cb9: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 0dcc98450cb9: Download complete Step #5 - "build-check-afl-address-x86_64": 602ff4a86beb: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 602ff4a86beb: Download complete Step #5 - "build-check-afl-address-x86_64": 1e1d839208c0: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 1e1d839208c0: Download complete Step #5 - "build-check-afl-address-x86_64": 917802590ade: Pull complete Step #5 - "build-check-afl-address-x86_64": 4efce3683cab: Pull complete Step #5 - "build-check-afl-address-x86_64": 0fed6a8e0990: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 0fed6a8e0990: Download complete Step #5 - "build-check-afl-address-x86_64": 416b414939dc: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 416b414939dc: Download complete Step #5 - "build-check-afl-address-x86_64": d4af253576e2: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": d4af253576e2: Download complete Step #5 - "build-check-afl-address-x86_64": 32c6b9b3a355: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 32c6b9b3a355: Download complete Step #5 - "build-check-afl-address-x86_64": 731ef4034f36: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 731ef4034f36: Download complete Step #5 - "build-check-afl-address-x86_64": 922b1ab1d770: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 922b1ab1d770: Download complete Step #5 - "build-check-afl-address-x86_64": e99995572309: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": e99995572309: Download complete Step #5 - "build-check-afl-address-x86_64": a868ce8f89db: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": a868ce8f89db: Download complete Step #5 - "build-check-afl-address-x86_64": 373eaec1aabb: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 373eaec1aabb: Download complete Step #5 - "build-check-afl-address-x86_64": 785d944e1d0d: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": 785d944e1d0d: Download complete Step #5 - "build-check-afl-address-x86_64": f5d61c14d73a: Verifying Checksum Step #5 - "build-check-afl-address-x86_64": f5d61c14d73a: Download complete Step #5 - "build-check-afl-address-x86_64": fe71553d90ec: Pull complete Step #5 - "build-check-afl-address-x86_64": c3cd171d66f5: Pull complete Step #5 - "build-check-afl-address-x86_64": fbf4221b088e: Pull complete Step #5 - "build-check-afl-address-x86_64": 1c62bf06aeba: Pull complete Step #5 - "build-check-afl-address-x86_64": 0fed6a8e0990: Pull complete Step #5 - "build-check-afl-address-x86_64": 0dcc98450cb9: Pull complete Step #5 - "build-check-afl-address-x86_64": 602ff4a86beb: Pull complete Step #5 - "build-check-afl-address-x86_64": 1e1d839208c0: Pull complete Step #5 - "build-check-afl-address-x86_64": d4af253576e2: Pull complete Step #5 - "build-check-afl-address-x86_64": 416b414939dc: Pull complete Step #5 - "build-check-afl-address-x86_64": f5d61c14d73a: Pull complete Step #5 - "build-check-afl-address-x86_64": 32c6b9b3a355: Pull complete Step #5 - "build-check-afl-address-x86_64": 731ef4034f36: Pull complete Step #5 - "build-check-afl-address-x86_64": 922b1ab1d770: Pull complete Step #5 - "build-check-afl-address-x86_64": e99995572309: Pull complete Step #5 - "build-check-afl-address-x86_64": 373eaec1aabb: Pull complete Step #5 - "build-check-afl-address-x86_64": a868ce8f89db: Pull complete Step #5 - "build-check-afl-address-x86_64": 785d944e1d0d: Pull complete Step #5 - "build-check-afl-address-x86_64": Digest: sha256:99b75558b29c3a2b806f3264987609968656e62760b07d74a5ec6464fb47cf9a Step #5 - "build-check-afl-address-x86_64": Status: Downloaded newer image for gcr.io/oss-fuzz-base/base-runner:latest Step #5 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpra_edgyn/fuzz_obconversion_sdf Step #5 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpra_edgyn/fuzz_obconversion_smiles Step #5 - "build-check-afl-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpra_edgyn/fuzz_convert Finished Step #5 - "build-check-afl-address-x86_64" Starting Step #6 Step #6: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #6 Starting Step #7 Step #7: Already have image: gcr.io/oss-fuzz/openbabel Step #7: adding: SanitizerCoverageLTO.so (deflated 70%) Step #7: adding: SanitizerCoveragePCGUARD.so (deflated 70%) Step #7: adding: afl-addseeds (deflated 56%) Step #7: adding: afl-analyze (deflated 54%) Step #7: adding: afl-as (deflated 63%) Step #7: adding: afl-c++ (deflated 57%) Step #7: adding: afl-c++.8 (deflated 56%) Step #7: adding: afl-cc (deflated 57%) Step #7: adding: afl-cc.8 (deflated 56%) Step #7: adding: afl-clang (deflated 57%) Step #7: adding: afl-clang++ (deflated 57%) Step #7: adding: afl-clang-fast (deflated 57%) Step #7: adding: afl-clang-fast++ (deflated 57%) Step #7: adding: afl-clang-fast++.8 (deflated 56%) Step #7: adding: afl-clang-fast.8 (deflated 56%) Step #7: adding: afl-clang-lto (deflated 57%) Step #7: adding: afl-clang-lto++ (deflated 57%) Step #7: adding: afl-clang-lto++.8 (deflated 56%) Step #7: adding: afl-clang-lto.8 (deflated 56%) Step #7: adding: afl-cmin (deflated 70%) Step #7: adding: afl-cmin.bash (deflated 65%) Step #7: adding: afl-compiler-rt-32.o (deflated 56%) Step #7: adding: afl-compiler-rt-64.o (deflated 67%) Step #7: adding: afl-compiler-rt.o (deflated 67%) Step #7: adding: afl-fuzz (deflated 55%) Step #7: adding: afl-g++ (deflated 57%) Step #7: adding: afl-gcc (deflated 57%) Step #7: adding: afl-gotcpu (deflated 61%) Step #7: adding: afl-ld-lto (deflated 63%) Step #7: adding: afl-llvm-dict2file.so (deflated 69%) Step #7: adding: afl-llvm-lto-instrumentlist.so (deflated 70%) Step #7: adding: afl-llvm-pass.so (deflated 68%) Step #7: adding: afl-llvm-rt-lto-32.o (deflated 21%) Step #7: adding: afl-llvm-rt-lto-64.o (deflated 20%) Step #7: adding: afl-llvm-rt-lto.o (deflated 20%) Step #7: adding: afl-lto (deflated 57%) Step #7: adding: afl-lto++ (deflated 57%) Step #7: adding: afl-lto++.8 (deflated 56%) Step #7: adding: afl-lto.8 (deflated 56%) Step #7: adding: afl-persistent-config (deflated 60%) Step #7: adding: afl-plot (deflated 65%) Step #7: adding: afl-showmap (deflated 55%) Step #7: adding: afl-system-config (deflated 63%) Step #7: adding: afl-tmin (deflated 54%) Step #7: adding: afl-whatsup (deflated 69%) Step #7: adding: afl-wine-trace (deflated 70%) Step #7: adding: afl_options.txt (deflated 20%) Step #7: adding: cmplog-instructions-pass.so (deflated 69%) Step #7: adding: cmplog-routines-pass.so (deflated 70%) Step #7: adding: cmplog-switches-pass.so (deflated 69%) Step #7: adding: compare-transform-pass.so (deflated 69%) Step #7: adding: dynamic_list.txt (deflated 76%) Step #7: adding: fuzz_convert (deflated 66%) Step #7: adding: fuzz_obconversion_sdf (deflated 66%) Step #7: adding: fuzz_obconversion_smiles (deflated 66%) Step #7: adding: libAFLDriver.a (deflated 64%) Step #7: adding: libAFLQemuDriver.a (deflated 64%) Step #7: adding: llvm-symbolizer (deflated 66%) Step #7: adding: split-compares-pass.so (deflated 68%) Step #7: adding: split-switches-pass.so (deflated 69%) Finished Step #7 Starting Step #8 Step #8: Pulling image: gcr.io/oss-fuzz-base/uploader Step #8: Using default tag: latest Step #8: latest: Pulling from oss-fuzz-base/uploader Step #8: c62795f78da9: Pulling fs layer Step #8: d4fceeeb758e: Pulling fs layer Step #8: 5c9125a401ae: Pulling fs layer Step #8: 0062f774e994: Pulling fs layer Step #8: 6b33fd031fac: Pulling fs layer Step #8: 7eb39101e508: Pulling fs layer Step #8: 89257482f398: Pulling fs layer Step #8: 6b33fd031fac: Waiting Step #8: 7eb39101e508: Waiting Step #8: 89257482f398: Waiting Step #8: 0062f774e994: Waiting Step #8: 5c9125a401ae: Verifying Checksum Step #8: 5c9125a401ae: Download complete Step #8: d4fceeeb758e: Verifying Checksum Step #8: d4fceeeb758e: Download complete Step #8: 0062f774e994: Verifying Checksum Step #8: 0062f774e994: Download complete Step #8: 6b33fd031fac: Verifying Checksum Step #8: 6b33fd031fac: Download complete Step #8: 89257482f398: Verifying Checksum Step #8: 89257482f398: Download complete Step #8: c62795f78da9: Verifying Checksum Step #8: c62795f78da9: Download complete Step #8: 7eb39101e508: Verifying Checksum Step #8: 7eb39101e508: Download complete Step #8: c62795f78da9: Pull complete Step #8: d4fceeeb758e: Pull complete Step #8: 5c9125a401ae: Pull complete Step #8: 0062f774e994: Pull complete Step #8: 6b33fd031fac: Pull complete Step #8: 7eb39101e508: Pull complete Step #8: 89257482f398: Pull complete Step #8: Digest: sha256:5717ba63d13b5515063e2a6ccad09fb5bf32a86c8e0798a363d81c2be522e411 Step #8: Status: Downloaded newer image for gcr.io/oss-fuzz-base/uploader:latest Step #8: gcr.io/oss-fuzz-base/uploader:latest Step #8: % Total % Received % Xferd Average Speed Time Time Time Current Step #8: Dload Upload Total Spent Left Speed Step #8: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 932 --:--:-- --:--:-- --:--:-- 935 Finished Step #8 Starting Step #9 Step #9: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #9: % Total % Received % Xferd Average Speed Time Time Time Current Step #9: Dload Upload Total Spent Left Speed Step #9: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 90.2M 0 0 100 90.2M 0 149M --:--:-- --:--:-- --:--:-- 149M 100 90.2M 0 0 100 90.2M 0 149M --:--:-- --:--:-- --:--:-- 149M Finished Step #9 Starting Step #10 Step #10: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #10: % Total % Received % Xferd Average Speed Time Time Time Current Step #10: Dload Upload Total Spent Left Speed Step #10: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 243 --:--:-- --:--:-- --:--:-- 244 Finished Step #10 Starting Step #11 Step #11: Already have image (with digest): gcr.io/cloud-builders/curl Step #11: % Total % Received % Xferd Average Speed Time Time Time Current Step #11: Dload Upload Total Spent Left Speed Step #11: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 185 --:--:-- --:--:-- --:--:-- 186 Finished Step #11 Starting Step #12 Step #12: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #12 Starting Step #13 - "compile-honggfuzz-address-x86_64" Step #13 - "compile-honggfuzz-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #13 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #13 - "compile-honggfuzz-address-x86_64": vm.mmap_rnd_bits = 28 Step #13 - "compile-honggfuzz-address-x86_64": Skipping compilation; using precompiled honggfuzz Step #13 - "compile-honggfuzz-address-x86_64": done. Step #13 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #13 - "compile-honggfuzz-address-x86_64": CC=clang Step #13 - "compile-honggfuzz-address-x86_64": CXX=clang++ Step #13 - "compile-honggfuzz-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp Step #13 - "compile-honggfuzz-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize-coverage=trace-pc-guard,indirect-calls,trace-cmp -stdlib=libc++ Step #13 - "compile-honggfuzz-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #13 - "compile-honggfuzz-address-x86_64": --------------------------------------------------------------- Step #13 - "compile-honggfuzz-address-x86_64": + mkdir build Step #13 - "compile-honggfuzz-address-x86_64": + cd build Step #13 - "compile-honggfuzz-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #13 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #13 - "compile-honggfuzz-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #13 - "compile-honggfuzz-address-x86_64": CMake. Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #13 - "compile-honggfuzz-address-x86_64": CMake that the project does not need compatibility with older versions. Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": -- The C compiler identification is Clang 18.1.8 Step #13 - "compile-honggfuzz-address-x86_64": -- The CXX compiler identification is Clang 18.1.8 Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting C compiler ABI info Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting C compiler ABI info - done Step #13 - "compile-honggfuzz-address-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting C compile features Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting C compile features - done Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compiler ABI info Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compiler ABI info - done Step #13 - "compile-honggfuzz-address-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compile features Step #13 - "compile-honggfuzz-address-x86_64": -- Detecting CXX compile features - done Step #13 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #13 - "compile-honggfuzz-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #13 - "compile-honggfuzz-address-x86_64": of CMake. Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #13 - "compile-honggfuzz-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #13 - "compile-honggfuzz-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #13 - "compile-honggfuzz-address-x86_64": behavior and not rely on setting a policy to OLD. Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": -- Using included inchi library. Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #13 - "compile-honggfuzz-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #13 - "compile-honggfuzz-address-x86_64": libxml2 not found - disabling CML support! Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for conio.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for conio.h - not found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for sys/time.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for sys/time.h - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for time.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for time.h - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for strings.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for strings.h - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for regex.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for regex.h - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for C++ include sstream Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for C++ include sstream - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for rint Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for rint - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for snprintf Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for snprintf - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for sranddev Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for sranddev - not found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for strcasecmp Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for strcasecmp - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for strncasecmp Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for strncasecmp - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for xdrstdio_create Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for xdrstdio_create - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for dlopen in dl Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for dlopen in dl - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for sys/types.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for sys/types.h - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for stdint.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for stdint.h - found Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for stddef.h Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for stddef.h - found Step #13 - "compile-honggfuzz-address-x86_64": -- Check size of clock_t Step #13 - "compile-honggfuzz-address-x86_64": -- Check size of clock_t - done Step #13 - "compile-honggfuzz-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #13 - "compile-honggfuzz-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #13 - "compile-honggfuzz-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #13 - "compile-honggfuzz-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #13 - "compile-honggfuzz-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #13 - "compile-honggfuzz-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #13 - "compile-honggfuzz-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #13 - "compile-honggfuzz-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #13 - "compile-honggfuzz-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #13 - "compile-honggfuzz-address-x86_64": -- Found Threads: TRUE Step #13 - "compile-honggfuzz-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for getopt Step #13 - "compile-honggfuzz-address-x86_64": -- Looking for getopt - found Step #13 - "compile-honggfuzz-address-x86_64": -- GUI will not be built Step #13 - "compile-honggfuzz-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #13 - "compile-honggfuzz-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #13 - "compile-honggfuzz-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #13 - "compile-honggfuzz-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64": Call Stack (most recent call first): Step #13 - "compile-honggfuzz-address-x86_64": test/CMakeLists.txt:233 (include) Step #13 - "compile-honggfuzz-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.10.14") Step #13 - "compile-honggfuzz-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #13 - "compile-honggfuzz-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #13 - "compile-honggfuzz-address-x86_64": CMake. Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #13 - "compile-honggfuzz-address-x86_64": CMake that the project does not need compatibility with older versions. Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": -- Configuring done (6.1s) Step #13 - "compile-honggfuzz-address-x86_64": -- Generating done (0.1s) Step #13 - "compile-honggfuzz-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #13 - "compile-honggfuzz-address-x86_64": ++ nproc Step #13 - "compile-honggfuzz-address-x86_64": + make -j 32 Step #13 - "compile-honggfuzz-address-x86_64": [ 0%] Generating atomtyp.h Step #13 - "compile-honggfuzz-address-x86_64": [ 0%] Generating bondtyp.h Step #13 - "compile-honggfuzz-address-x86_64": [ 1%] Generating phmodeldata.h Step #13 - "compile-honggfuzz-address-x86_64": [ 1%] Generating resdata.h Step #13 - "compile-honggfuzz-address-x86_64": [ 1%] Generating torlib.h Step #13 - "compile-honggfuzz-address-x86_64": [ 1%] Generating atomizationenergies.h Step #13 - "compile-honggfuzz-address-x86_64": [ 2%] Generating spacegroups.h Step #13 - "compile-honggfuzz-address-x86_64": [ 2%] Generating types.h Step #13 - "compile-honggfuzz-address-x86_64": [ 2%] Generating ringtyp.h Step #13 - "compile-honggfuzz-address-x86_64": [ 2%] Built target data_headers Step #13 - "compile-honggfuzz-address-x86_64": [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 82 | _ival=nullptr; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #13 - "compile-honggfuzz-address-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTe/src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1143 | if (IsNearZero(v1.length(),s t1e.d0[ej-]3>)=0) (*bondL Step #13 - "compile-honggfuzz-address-x86_64": a b| el ^) Step #13 - "compile-honggfuzz-address-x86_64": [j]=1; else/src/openbabel/include/openbabel/obutil.h :(197*bondLabel)[j]:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": = 197 | 0; Step #13 - "compile-honggfuzz-address-x86_64": | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 118 | if (_[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": ival) delete [] _ival; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 118 | if (_ival) delete [] _ival; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 1523 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 1539 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 1572 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 359 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 361 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 430 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 432 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 434 | /src/openbabel/src/forcefield.cpp else if (bon:1180d:8: warning: 3 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_D'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": EPREC 1180 | AT rl.SetFixAtomEs(fixed); Step #13 - "compile-honggfuzz-address-x86_64": |  ^D_MSG Step #13 - "compile-honggfuzz-address-x86_64": ("Use ve/src/openbabel/include/openbabel/rotor.hc:t633o:r35:: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": :IsApprox() instead.") 633 |  Step #13 - "compile-honggfuzz-address-x86_64": O| B_ ^ Step #13 - "compile-honggfuzz-address-x86_64": DEPRE/src/openbabel/build/include/openbabel/babelconfig.h:38:38C: Anote: TEexpanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": D_ MSG38(" | Se e S e#tFixeddeBfoinds(n)e "OB)_ Step #13 - "compile-honggfuzz-address-x86_64": | DE ^P Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.hRECATED_M:38:S38G: (mnote: sg) expanded from macro 'OB_DEPRECATED_MSG'[ Step #13 - "compile-honggfuzz-address-x86_64": [de 38precated(ms | #defgi)n]e O]B_ Step #13 - "compile-honggfuzz-address-x86_64": | DEP ^R Step #13 - "compile-honggfuzz-address-x86_64": ECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[d/src/openbabel/src/builder.cppep:450:23:r ecatwarning: ed(msg'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations])] Step #13 - "compile-honggfuzz-address-x86_64": ] 450 Step #13 - "compile-honggfuzz-address-x86_64": | |  ^ Step #13 - "compile-honggfuzz-address-x86_64": if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2731213:33 | : warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":   OB_/src/openbabel/include/openbabel/rotor.h:DE449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | P RECA #define OB_DEPRECATED_MSG(msg) [[deprecated(Tmsg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": ED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 452 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 454 | else if (bond3 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 469 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]/src/openbabel/src/builder.cpp:471: Step #13 - "compile-honggfuzz-address-x86_64": 1372 | 28:  for (j = 0; j < rotor->GetResolution().swarning: ize(); j++) { // For each rotor position Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 471 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 473 | e'SetFixAtoms' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": l 633 | OB_DEPRECATED_MSG("Ssee SetFixedBonds()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": e if (bond3 == VZe/src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": ro) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApp/src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": rox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 494 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPR/src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": E 1622 | rl.SetFixAtoms(fixed); Step #13 - "compile-honggfuzz-address-x86_64": CATE |  ^ Step #13 - "compile-honggfuzz-address-x86_64": D/src/openbabel/include/openbabel/rotor.h:633:5: note: _M'SetFixAtoms' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": S 633 | OB_DEPRECATED_MSG("See SGe(tmsgF)i x[e[ddBeoprnedcsa(t)"e)d( Step #13 - "compile-honggfuzz-address-x86_64": m s| g) ^] Step #13 - "compile-honggfuzz-address-x86_64": ] Step #13 - "compile-honggfuzz-address-x86_64": |  ^/src/openbabel/build/include/openbabel/babelconfig.h Step #13 - "compile-honggfuzz-address-x86_64": :38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 496 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Us/src/openbabel/src/forcefield.cppe :v1635e:c32tor3:: :Iswarning: App'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations]ro Step #13 - "compile-honggfuzz-address-x86_64": 1635x | ( ) i n s t e acdo.m"b)in Step #13 - "compile-honggfuzz-address-x86_64": a t| io ^n Step #13 - "compile-honggfuzz-address-x86_64": s *= /src/openbabel/build/include/openbabel/babelconfig.hr:o38to:r38-:> Getnote: Reexpanded from macro 'OB_DEPRECATED_MSG'so Step #13 - "compile-honggfuzz-address-x86_64": l ut38i | o n ( ).size(); Step #13 - "compile-honggfuzz-address-x86_64": | #d ^e Step #13 - "compile-honggfuzz-address-x86_64": fine OB/src/openbabel/include/openbabel/rotor.h_:D449E:P5R:E CATnote: ED'GetResolution' has been explicitly marked deprecated here_M Step #13 - "compile-honggfuzz-address-x86_64": S G(m449s | g ) [ [OdBe_pDreEcPaRtEeCdA(TmEsDg_)M]S]G( Step #13 - "compile-honggfuzz-address-x86_64": " S| ee ^ Step #13 - "compile-honggfuzz-address-x86_64": GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 498 | else if (bond3 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1685 | for (unsigned /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 514 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | int OB_DEPRECATED_MSG("Use vector3::IsApprox() j = 0; jinstead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":  < rotor->GetResolution(/src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 516 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273).size(); | OB_DEPREj++) { Step #13 - "compile-honggfuzz-address-x86_64": CATED_MSG("Use vector3::IsApprox(| ) instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 518 | else if (bond3 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": | /src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64":  2788 | if (atom ^->GetVector() != VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 278 | Step #13 - "compile-honggfuzz-address-x86_64":  O/src/openbabel/include/openbabel/rotor.hB_DEPRECATED_MSG(:"449Use vector3::IsApprox() :i5n:stead." ) Step #13 - "compile-honggfuzz-address-x86_64": | note: ^ Step #13 - "compile-honggfuzz-address-x86_64": 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38: 38449: |   note: Oexpanded from macro 'OB_DEPRECATED_MSG'B_ Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPD ^ Step #13 - "compile-honggfuzz-address-x86_64": R/src/openbabel/include/openbabel/math/vector3.h:E273C:5: EPREATCATED_MSG("ED_note: MSG(See GetTorsionVmsg)'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 520 | else if (bond4 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 533 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":  [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | alues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 535 | OB_ DEPRECATE else ifD Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": (bond/src/openbabel/build/include/openbabel/babelconfig.h2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: /src/openbabel/src/forcefield.cpp:1712:43: :37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1712 |  note:  for 'operator==' has been explicitly marked deprecated here(unsigned int j/src/openbabel/src/mol.cpp:2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2805 | if (!hasY && !IsNearZero(atom->y()) = 0; j < rotor Step #13 - "compile-honggfuzz-address-x86_64": ->GetR 273 | OBesolution()_D Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:).size()3; :j ++)note: {'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": Step #13 - "compile-honggfuzz-address-x86_64": | 197 | ^ Step #13 - "compile-honggfuzz-address-x86_64": OB_DEPREECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^PRECATED_M Step #13 - "compile-honggfuzz-address-x86_64": SG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29/src/openbabel/include/openbabel/rotor.h:: 449:5note: : expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": note: 'GetResolution' has been explicitly marked deprecated here37 | Step #13 - "compile-honggfuzz-address-x86_64": 449 | # d e f iOnBe_ DOBE_PDREE/src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 537 | else if (bond3 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: PRECATED [[deprCnote: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": A 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)TED_MSG("See GetTorsionValues()")ecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64":  2826 | if (!hasX && !IsNearZero(atom->x())) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z()))]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:/src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 539 | else if (bond4 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 564 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 566 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 568 | else if (bond3 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use v/src/openbabel/src/mol.cppe:3252:24: warning: c'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": tor3::IsA 3252 | p ifp ((*rirngit)->PoathSizxe() ==( 5) Step #13 - "compile-honggfuzz-address-x86_64": )|  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note:  'PathSize' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 65 | i OB_DEPnRECATEsD_MSG(t"Use Seize() ainsteadd") Step #13 - "compile-honggfuzz-address-x86_64": .|  ^ Step #13 - "compile-honggfuzz-address-x86_64": ") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:/src/openbabel/build/include/openbabel/babelconfig.h:38:38: 38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 |  note:  #defiexpanded from macro 'OB_DEPRECATED_MSG'ne OB_DEPREC Step #13 - "compile-honggfuzz-address-x86_64": ATED_M 38 | #dSefine OB_GDEPRECAT(ED_MSGmsg(msg) [[d)eprecated( msg)]][ Step #13 - "compile-honggfuzz-address-x86_64": | [ ^ Step #13 - "compile-honggfuzz-address-x86_64": deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 570 | else if (bond4 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox(/src/openbabel/src/mol.cpp) :3274:29: warning: i'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3274 | nselse if ((*ringteaid.t)->PathSize() == 6) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": ")/src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECA Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": TED_MSG("Use Size()38 | #define in OB_DEPRstead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": ECATED_MSG(msg) /src/openbabel/build/include/openbabel/babelconfig.h[[d:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | eprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":  #define OB_DEPRECATED_MSG(msg) [[depreca/src/openbabel/src/builder.cppted(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": :572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 572 | else if (bond5 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 660 | if (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead."/src/openbabel/src/forcefield.cpp) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": :2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2420 | if (IsNearZero(scale)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 718 | if/src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":  (bond1 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define O/src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2657 | if B(IsNear(e_n2, e_n1, 1.0e-7)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": _/src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApDEPRECprox() insteaATED_MSGd") Step #13 - "compile-honggfuzz-address-x86_64": (msg)| [[depreca ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.ht:e38d:(38m:s g)]note: ]expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64":  Step #13 - "compile-honggfuzz-address-x86_64": |  ^38 Step #13 - "compile-honggfuzz-address-x86_64": |   #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 720 | else if (bond2 == VZero) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: 1089 | m warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations]ol.Get Step #13 - "compile-honggfuzz-address-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": FirstAtom()->GetHyb(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/builder.cpp:1427:17:/src/openbabel/src/forcefield.cpp: 3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3735 | if (IsNearZero(length)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.hwarning: :197'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29:  Step #13 - "compile-honggfuzz-address-x86_64": note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB 1427_D | if (bond1 == VZero) { Step #13 - "compile-honggfuzz-address-x86_64": | EPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 273 | /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3:  OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3802 | if (IsNearZero(length)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4076 | if (IsNearZero(length_jk[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": )) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 452 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 443 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 355 | rotor->SetDelta(delta); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 34 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 5 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 589 | gd->GetOriginVector(origin); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #13 - "compile-honggfuzz-address-x86_64": 310 | else if (vs[0][0] == '2') Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 51 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #13 - "compile-honggfuzz-address-x86_64": 911 | switch(pRD->ReactionType) Step #13 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": 9 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #13 - "compile-honggfuzz-address-x86_64": 990 | switch(pRD->ReactionType) Step #13 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #13 - "compile-honggfuzz-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.subs[ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": tr(0, found); Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~ ^~~~ Step #13 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 275 | gd->GetOriginVector(origin); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 287 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #13 - "compile-honggfuzz-address-x86_64": 158 | switch (chirality) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #13 - "compile-honggfuzz-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #13 - "compile-honggfuzz-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #13 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #13 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #13 - "compile-honggfuzz-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #13 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #13 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #13 - "compile-honggfuzz-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #13 - "compile-honggfuzz-address-x86_64": |  ~ ^~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #13 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #13 - "compile-honggfuzz-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #13 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #13 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #13 - "compile-honggfuzz-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #13 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #13 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #13 - "compile-honggfuzz-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #13 - "compile-honggfuzz-address-x86_64": |  ~~ ^~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #13 - "compile-honggfuzz-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~^~ Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #13 - "compile-honggfuzz-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #13 - "compile-honggfuzz-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #13 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 1523 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPR[ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": ECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #13 - "compile-honggfuzz-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #13 - "compile-honggfuzz-address-x86_64": |  ~~~~~~~~~~~ ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #13 - "compile-honggfuzz-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #13 - "compile-honggfuzz-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 9 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 197 | OB_DEPRECATED Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #13 - "compile-honggfuzz-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": 1 warning generated. Step #13 - "compile-honggfuzz-address-x86_64": 4 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #13 - "compile-honggfuzz-address-x86_64": [ 75%] Built target openbabel Step #13 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #13 - "compile-honggfuzz-address-x86_64": 255 | // / \  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #13 - "compile-honggfuzz-address-x86_64": 270 | // / \  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #13 - "compile-honggfuzz-address-x86_64": 285 | // \  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #13 - "compile-honggfuzz-address-x86_64": 287 | // \  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #13 - "compile-honggfuzz-address-x86_64": 310 | // /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64":  \  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": | /src/openbabel/test/stereoperceptiontest.cpp ^ Step #13 - "compile-honggfuzz-address-x86_64": :432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #13 - "compile-honggfuzz-address-x86_64": 432 | //src/openbabel/build/include/openbabel/babelconfig.h/: \ 38 :  Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #13 - "compile-honggfuzz-address-x86_64": 102 | switch (units.at(i).type) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #13 - "compile-honggfuzz-address-x86_64": 132 | switch (units.at(i).type) { Step #13 - "compile-honggfuzz-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #13 - "compile-honggfuzz-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #13 - "compile-honggfuzz-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #13 - "compile-honggfuzz-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #13 - "compile-honggfuzz-address-x86_64": [ 89%] Linking CXX executable ../bin/obabel Step #13 - "compile-honggfuzz-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #13 - "compile-honggfuzz-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 3 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 95%] Built target fuzz_obconversion_smiles Step #13 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 95%] Built target fuzz_obconversion_sdf Step #13 - "compile-honggfuzz-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 96%] Built target roundtrip Step #13 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 97%] Built target obabel Step #13 - "compile-honggfuzz-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 97%] Built target fuzz_convert Step #13 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": 2 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 190 | x = m2.Get( i, j ); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 6 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #13 - "compile-honggfuzz-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #13 - "compile-honggfuzz-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #13 - "compile-honggfuzz-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #13 - "compile-honggfuzz-address-x86_64": |  ^ Step #13 - "compile-honggfuzz-address-x86_64": 17 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": 24 warnings generated. Step #13 - "compile-honggfuzz-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #13 - "compile-honggfuzz-address-x86_64": [100%] Built target test_runner Step #13 - "compile-honggfuzz-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/honggfuzz-address-x86_64/ Finished Step #13 - "compile-honggfuzz-address-x86_64" Starting Step #14 - "build-check-honggfuzz-address-x86_64" Step #14 - "build-check-honggfuzz-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #14 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpfm169elb/fuzz_obconversion_sdf Step #14 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpfm169elb/fuzz_obconversion_smiles Step #14 - "build-check-honggfuzz-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpfm169elb/fuzz_convert Finished Step #14 - "build-check-honggfuzz-address-x86_64" Starting Step #15 Step #15: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #15 Starting Step #16 Step #16: Already have image: gcr.io/oss-fuzz/openbabel Step #16: adding: fuzz_convert (deflated 66%) Step #16: adding: fuzz_obconversion_sdf (deflated 66%) Step #16: adding: fuzz_obconversion_smiles (deflated 66%) Step #16: adding: honggfuzz (deflated 66%) Step #16: adding: llvm-symbolizer (deflated 66%) Finished Step #16 Starting Step #17 Step #17: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #17: % Total % Received % Xferd Average Speed Time Time Time Current Step #17: Dload Upload Total Spent Left Speed Step #17: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 794 --:--:-- --:--:-- --:--:-- 796 Finished Step #17 Starting Step #18 Step #18: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #18: % Total % Received % Xferd Average Speed Time Time Time Current Step #18: Dload Upload Total Spent Left Speed Step #18: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 40.3M 0 0 100 40.3M 0 104M --:--:-- --:--:-- --:--:-- 104M Finished Step #18 Starting Step #19 Step #19: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #19: % Total % Received % Xferd Average Speed Time Time Time Current Step #19: Dload Upload Total Spent Left Speed Step #19: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 175 --:--:-- --:--:-- --:--:-- 175 Finished Step #19 Starting Step #20 Step #20: Already have image (with digest): gcr.io/cloud-builders/curl Step #20: % Total % Received % Xferd Average Speed Time Time Time Current Step #20: Dload Upload Total Spent Left Speed Step #20: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 165 --:--:-- --:--:-- --:--:-- 165 Finished Step #20 Starting Step #21 Step #21: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #21 Starting Step #22 - "compile-libfuzzer-address-x86_64" Step #22 - "compile-libfuzzer-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #22 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #22 - "compile-libfuzzer-address-x86_64": vm.mmap_rnd_bits = 28 Step #22 - "compile-libfuzzer-address-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #22 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #22 - "compile-libfuzzer-address-x86_64": CC=clang Step #22 - "compile-libfuzzer-address-x86_64": CXX=clang++ Step #22 - "compile-libfuzzer-address-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link Step #22 - "compile-libfuzzer-address-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=address -fsanitize-address-use-after-scope -fsanitize=fuzzer-no-link -stdlib=libc++ Step #22 - "compile-libfuzzer-address-x86_64": RUSTFLAGS=--cfg fuzzing -Zsanitizer=address -Cdebuginfo=1 -Cforce-frame-pointers Step #22 - "compile-libfuzzer-address-x86_64": --------------------------------------------------------------- Step #22 - "compile-libfuzzer-address-x86_64": + mkdir build Step #22 - "compile-libfuzzer-address-x86_64": + cd build Step #22 - "compile-libfuzzer-address-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #22 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #22 - "compile-libfuzzer-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #22 - "compile-libfuzzer-address-x86_64": CMake. Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #22 - "compile-libfuzzer-address-x86_64": CMake that the project does not need compatibility with older versions. Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64":  Step #22 - "compile-libfuzzer-address-x86_64": -- The C compiler identification is Clang 18.1.8 Step #22 - "compile-libfuzzer-address-x86_64": -- The CXX compiler identification is Clang 18.1.8 Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting C compiler ABI info Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting C compiler ABI info - done Step #22 - "compile-libfuzzer-address-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting C compile features Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting C compile features - done Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compiler ABI info Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compiler ABI info - done Step #22 - "compile-libfuzzer-address-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compile features Step #22 - "compile-libfuzzer-address-x86_64": -- Detecting CXX compile features - done Step #22 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #22 - "compile-libfuzzer-address-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #22 - "compile-libfuzzer-address-x86_64": of CMake. Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #22 - "compile-libfuzzer-address-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #22 - "compile-libfuzzer-address-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #22 - "compile-libfuzzer-address-x86_64": behavior and not rely on setting a policy to OLD. Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64":  Step #22 - "compile-libfuzzer-address-x86_64": -- Using included inchi library. Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #22 - "compile-libfuzzer-address-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #22 - "compile-libfuzzer-address-x86_64": libxml2 not found - disabling CML support! Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64":  Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for conio.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for conio.h - not found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for sys/time.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for sys/time.h - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for time.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for time.h - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for strings.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for strings.h - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for regex.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for regex.h - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for C++ include sstream Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for C++ include sstream - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for rint Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for rint - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for snprintf Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for snprintf - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for sranddev Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for sranddev - not found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for strcasecmp Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for strcasecmp - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for strncasecmp Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for strncasecmp - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for xdrstdio_create Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for xdrstdio_create - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for dlopen in dl Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for dlopen in dl - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for sys/types.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for sys/types.h - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for stdint.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for stdint.h - found Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for stddef.h Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for stddef.h - found Step #22 - "compile-libfuzzer-address-x86_64": -- Check size of clock_t Step #22 - "compile-libfuzzer-address-x86_64": -- Check size of clock_t - done Step #22 - "compile-libfuzzer-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #22 - "compile-libfuzzer-address-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #22 - "compile-libfuzzer-address-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #22 - "compile-libfuzzer-address-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #22 - "compile-libfuzzer-address-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #22 - "compile-libfuzzer-address-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #22 - "compile-libfuzzer-address-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #22 - "compile-libfuzzer-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #22 - "compile-libfuzzer-address-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #22 - "compile-libfuzzer-address-x86_64": -- Found Threads: TRUE Step #22 - "compile-libfuzzer-address-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for getopt Step #22 - "compile-libfuzzer-address-x86_64": -- Looking for getopt - found Step #22 - "compile-libfuzzer-address-x86_64": -- GUI will not be built Step #22 - "compile-libfuzzer-address-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #22 - "compile-libfuzzer-address-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #22 - "compile-libfuzzer-address-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #22 - "compile-libfuzzer-address-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64": Call Stack (most recent call first): Step #22 - "compile-libfuzzer-address-x86_64": test/CMakeLists.txt:233 (include) Step #22 - "compile-libfuzzer-address-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #22 - "compile-libfuzzer-address-x86_64":  Step #22 - "compile-libfuzzer-address-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.10.14") Step #22 - "compile-libfuzzer-address-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #22 - "compile-libfuzzer-address-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #22 - "compile-libfuzzer-address-x86_64": CMake. Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #22 - "compile-libfuzzer-address-x86_64": CMake that the project does not need compatibility with older versions. Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64":  Step #22 - "compile-libfuzzer-address-x86_64": -- Configuring done (6.1s) Step #22 - "compile-libfuzzer-address-x86_64": -- Generating done (0.1s) Step #22 - "compile-libfuzzer-address-x86_64": -- Build files have been written to: /src/openbabel/build Step #22 - "compile-libfuzzer-address-x86_64": ++ nproc Step #22 - "compile-libfuzzer-address-x86_64": + make -j 32 Step #22 - "compile-libfuzzer-address-x86_64": [ 0%] Generating atomtyp.h Step #22 - "compile-libfuzzer-address-x86_64": [ 0%] Generating bondtyp.h Step #22 - "compile-libfuzzer-address-x86_64": [ 1%] Generating phmodeldata.h Step #22 - "compile-libfuzzer-address-x86_64": [ 1%] Generating resdata.h Step #22 - "compile-libfuzzer-address-x86_64": [ 1%] Generating atomizationenergies.h Step #22 - "compile-libfuzzer-address-x86_64": [ 1%] Generating torlib.h Step #22 - "compile-libfuzzer-address-x86_64": [ 1%] Generating types.h Step #22 - "compile-libfuzzer-address-x86_64": [ 2%] Generating spacegroups.h Step #22 - "compile-libfuzzer-address-x86_64": [ 2%] Generating ringtyp.h Step #22 - "compile-libfuzzer-address-x86_64": [ 2%] Built target data_headers Step #22 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 82 | _ival=nullptr; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 297 | if (!IsNearZero(val[2])) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) delete [] _ival; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:/src/openbabel/src/mcdlutil.cpp:295032:95:: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #22 - "compile-libfuzzer-address-x86_64": note: 5032 |  expanded from macro 'OB_DEPRECATED' i Step #22 - "compile-libfuzzer-address-x86_64": 37 | f #defi(ntest2) for (j=0; ejnBonds()B; j++_) DifE (bSTePsRtedE[j]C>=A0T) ED (*b[o[nddeLabpel)recated]] Step #22 - "compile-libfuzzer-address-x86_64": [ j]| =1; ^ Step #22 - "compile-libfuzzer-address-x86_64": elIn file included from se (*bondLabel)[/src/openbabel/src/forcefield.cppj]:=340: Step #22 - "compile-libfuzzer-address-x86_64": ; Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h :| 118: ^28 Step #22 - "compile-libfuzzer-address-x86_64": : /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64":  warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 118 | if (_ival) de826lete [] _ival; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/grid.h:105:5:  | note: '_ival' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": i 105 | f OB ((*i_DEPRE)CATED i-nt>IsI *_nival; //!R< for integer values \deprecated Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37ing(GetIdx()) && sta | tic_cast((*i)- #define O>PatB_DEPhRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": Size()) == size) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 1523 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 1539 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 1572 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 310 | if (bond2 == VZero || v1 == VZero) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 359 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 361 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 430 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 432 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 434 | else if (bond3 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 450 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 452 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 454 | else if (bond3 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 469 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 471 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 473 | else if (bond3 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[de/src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": p 1180 | rl.SetFixAtoms(fixed); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": re/src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": cated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 494 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 496 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprec/src/openbabel/include/openbabel/rotor.hat:e449d:(5m:s g)]note: ]'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64":  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": 449 |  OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[/src/openbabel/src/builder.cppde:p498recat:e28d:( msgwarning: )]]'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": Step #22 - "compile-libfuzzer-address-x86_64": |  ^498 Step #22 - "compile-libfuzzer-address-x86_64": |   else if (bond3 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[depre/src/openbabel/src/forcefield.cppca:t1213e:d33(:m sg)warning: ]]'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64":  Step #22 - "compile-libfuzzer-address-x86_64": |  ^1213 Step #22 - "compile-libfuzzer-address-x86_64": |   rotorKeys.AddRotor(rotor->GetResolution().size()); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 514 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 516 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here/src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64":  Step #22 - "compile-libfuzzer-address-x86_64": 1301 273 | OB_DEPRE | C ATED_rMl.SetSG("Use vFixAtector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38oms(fix:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 518 | else if (bond3 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 520 | else if (bond4 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": ed); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 633 | /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 533 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64":  OB_DEPRECATED_MSG("See SetFixedBonds()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2788 | if (atom->GetVector() != VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2805:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2805 | if (!hasY && !IsNearZero(atom->y())) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2826 | if (!hasX && !IsNearZero(atom->x())) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 535 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 537 | else if (bond3 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 539 | else if (bond4 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 564 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 566 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Us/src/openbabel/src/forcefield.cpp:1372:32: e vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3252 | if ((*ringit)->Pat/src/openbabel/src/builder.cpph:S568i:28:z e()warning: =='operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 5 Step #22 - "compile-libfuzzer-address-x86_64": ) 568 Step #22 - "compile-libfuzzer-address-x86_64": | |  ^ Step #22 - "compile-libfuzzer-address-x86_64":   /src/openbabel/include/openbabel/ring.h : 65else if (bond3 == :5: note: 'PathSize' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3274:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3274 | else if ((*ringit)->PathSize() == 6) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3343 | loopSize = (*ringit)->PathSize(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsA 1372pprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h | :38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED for (_MSG(msg) [[deprecated(msg)j = 0; ]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": j < rotor->GetResolution().size(); j++) { // For each rotor posit/src/openbabel/src/builder.cpp:570:28: ion Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 570 | else if (b/src/openbabel/include/openbabel/rotor.h:449:5: ond4 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.hnote: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": :273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | O 449 | B_DEPRECATED_MSG("Use vector3::IsApOB_DEPRECAprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": TED_MSG|  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: ("See Gexpanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #defietTorsionne OB_DEPRECATED_MSG(Values()msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": ") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: |  ^ Step #22 - "compile-libfuzzer-address-x86_64": note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[depr/src/openbabel/src/builder.cpp:572:28: ecated(msg)]warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 572 | else if (bond5] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg)/src/openbabel/src/builder.cpp:660:21:  [[dewarning: p'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 660 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": r/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": ecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 718 | if (bond1 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 720 | else if (bond2 == VZero) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1635 | combinations *= rotor->GetResolution().size(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1685 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1712 | for (unsigned int/src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64":  j = 0; j < rotor->GetResolution().size(); j++) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1720 | if (IsNear(worstE, bestE, 1.0e-3)) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1427 | if (bond1 == VZero) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2420 | if (IsNearZero(scale)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3735 | if (IsNearZero(length)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3802 | if (IsNearZero(length)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3949 | if (IsNearZero(length_ji)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3973 | if (IsNearZero(length_jl)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 452 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 443 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 355 | rotor->SetDelta(delta); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 371 | if (!IsNearZero(pcharge)) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 34 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 5 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 589 | gd->GetOriginVector(origin); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #22 - "compile-libfuzzer-address-x86_64": 310 | else if (vs[0][0] == '2') Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 51 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 9 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #22 - "compile-libfuzzer-address-x86_64": 911 | switch(pRD->ReactionType) Step #22 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #22 - "compile-libfuzzer-address-x86_64": 990 | switch(pRD->ReactionType) Step #22 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #22 - "compile-libfuzzer-address-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~ ^~~~ Step #22 - "compile-libfuzzer-address-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 275 | gd->GetOriginVector(origin); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 287 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #22 - "compile-libfuzzer-address-x86_64": 158 | switch (chirality) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #22 - "compile-libfuzzer-address-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #22 - "compile-libfuzzer-address-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #22 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #22 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #22 - "compile-libfuzzer-address-x86_64": 716 | if (fabs(lf) > MAXABS) { Step #22 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #22 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #22 - "compile-libfuzzer-address-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #22 - "compile-libfuzzer-address-x86_64": |  ~ ^~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #22 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #22 - "compile-libfuzzer-address-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #22 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #22 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #22 - "compile-libfuzzer-address-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #22 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #22 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #22 - "compile-libfuzzer-address-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #22 - "compile-libfuzzer-address-x86_64": |  ~~ ^~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #22 - "compile-libfuzzer-address-x86_64": 32 | #define MAXABS INT_MAX-2 Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~^~ Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #22 - "compile-libfuzzer-address-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #22 - "compile-libfuzzer-address-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 1523 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #22 - "compile-libfuzzer-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #22 - "compile-libfuzzer-address-x86_64": |  ~~~~~~~~~~~ ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #22 - "compile-libfuzzer-address-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #22 - "compile-libfuzzer-address-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": 9 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 197 | OB_DEPRECATED Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #22 - "compile-libfuzzer-address-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": 1 warning generated. Step #22 - "compile-libfuzzer-address-x86_64": 4 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #22 - "compile-libfuzzer-address-x86_64": [ 75%] Built target openbabel Step #22 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #22 - "compile-libfuzzer-address-x86_64": 255 | // / \  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #22 - "compile-libfuzzer-address-x86_64": 270 | // / \  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #22 - "compile-libfuzzer-address-x86_64": 285 | // \  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #22 - "compile-libfuzzer-address-x86_64": 287 | // \  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #22 - "compile-libfuzzer-address-x86_64": 310 | // \  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #22 - "compile-libfuzzer-address-x86_64": 432 | // \  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #22 - "compile-libfuzzer-address-x86_64": 102 | switch (units.at(i).type) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #22 - "compile-libfuzzer-address-x86_64": 132 | switch (units.at(i).type) { Step #22 - "compile-libfuzzer-address-x86_64": |  ^~~~~~~~~~~~~~~~ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 96 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 60.0, 1.0)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #22 - "compile-libfuzzer-address-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #22 - "compile-libfuzzer-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 89%] Linking CXX executable ../bin/roundtrip Step #22 - "compile-libfuzzer-address-x86_64": [ 89%] Linking CXX executable ../bin/obabel Step #22 - "compile-libfuzzer-address-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 91%] Linking CXX executable ../bin/fuzz_convert Step #22 - "compile-libfuzzer-address-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 3 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 95%] Built target fuzz_obconversion_sdf Step #22 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 96%] Built target fuzz_obconversion_smiles Step #22 - "compile-libfuzzer-address-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 97%] Built target roundtrip Step #22 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 97%] Built target obabel Step #22 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": 2 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": [ 99%] Built target fuzz_convert Step #22 - "compile-libfuzzer-address-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 190 | x = m2.Get( i, j ); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #22 - "compile-libfuzzer-address-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #22 - "compile-libfuzzer-address-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #22 - "compile-libfuzzer-address-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #22 - "compile-libfuzzer-address-x86_64": |  ^ Step #22 - "compile-libfuzzer-address-x86_64": 6 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": 17 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": 24 warnings generated. Step #22 - "compile-libfuzzer-address-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #22 - "compile-libfuzzer-address-x86_64": [100%] Built target test_runner Step #22 - "compile-libfuzzer-address-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-address-x86_64/ Finished Step #22 - "compile-libfuzzer-address-x86_64" Starting Step #23 - "build-check-libfuzzer-address-x86_64" Step #23 - "build-check-libfuzzer-address-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #23 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpv61pxgb4/fuzz_obconversion_sdf Step #23 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpv61pxgb4/fuzz_obconversion_smiles Step #23 - "build-check-libfuzzer-address-x86_64": INFO: performing bad build checks for /tmp/not-out/tmpv61pxgb4/fuzz_convert Finished Step #23 - "build-check-libfuzzer-address-x86_64" Starting Step #24 Step #24: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #24 Starting Step #25 Step #25: Already have image: gcr.io/oss-fuzz/openbabel Step #25: adding: fuzz_convert (deflated 68%) Step #25: adding: fuzz_obconversion_sdf (deflated 68%) Step #25: adding: fuzz_obconversion_smiles (deflated 68%) Step #25: adding: llvm-symbolizer (deflated 66%) Finished Step #25 Starting Step #26 Step #26: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #26: % Total % Received % Xferd Average Speed Time Time Time Current Step #26: Dload Upload Total Spent Left Speed Step #26: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 894 --:--:-- --:--:-- --:--:-- 898 Finished Step #26 Starting Step #27 Step #27: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #27: % Total % Received % Xferd Average Speed Time Time Time Current Step #27: Dload Upload Total Spent Left Speed Step #27: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 42.9M 0 0 100 42.9M 0 126M --:--:-- --:--:-- --:--:-- 126M Finished Step #27 Starting Step #28 Step #28: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #28: % Total % Received % Xferd Average Speed Time Time Time Current Step #28: Dload Upload Total Spent Left Speed Step #28: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 241 --:--:-- --:--:-- --:--:-- 241 Finished Step #28 Starting Step #29 Step #29: Already have image (with digest): gcr.io/cloud-builders/curl Step #29: % Total % Received % Xferd Average Speed Time Time Time Current Step #29: Dload Upload Total Spent Left Speed Step #29: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34 0 0 100 34 0 167 --:--:-- --:--:-- --:--:-- 166 100 34 0 0 100 34 0 153 --:--:-- --:--:-- --:--:-- 152 Finished Step #29 Starting Step #30 Step #30: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #30 Starting Step #31 - "compile-libfuzzer-undefined-x86_64" Step #31 - "compile-libfuzzer-undefined-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #31 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #31 - "compile-libfuzzer-undefined-x86_64": vm.mmap_rnd_bits = 28 Step #31 - "compile-libfuzzer-undefined-x86_64": Compiling libFuzzer to /usr/lib/libFuzzingEngine.a... done. Step #31 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #31 - "compile-libfuzzer-undefined-x86_64": CC=clang Step #31 - "compile-libfuzzer-undefined-x86_64": CXX=clang++ Step #31 - "compile-libfuzzer-undefined-x86_64": CFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -fno-sanitize=function Step #31 - "compile-libfuzzer-undefined-x86_64": CXXFLAGS=-O1 -fno-omit-frame-pointer -gline-tables-only -Wno-error=enum-constexpr-conversion -Wno-error=incompatible-function-pointer-types -Wno-error=int-conversion -Wno-error=deprecated-declarations -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=vla-cxx-extension -DFUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION -fsanitize=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unsigned-integer-overflow,unreachable,vla-bound,vptr -fno-sanitize-recover=array-bounds,bool,builtin,enum,function,integer-divide-by-zero,null,object-size,return,returns-nonnull-attribute,shift,signed-integer-overflow,unreachable,vla-bound,vptr -fsanitize=fuzzer-no-link -stdlib=libc++ Step #31 - "compile-libfuzzer-undefined-x86_64": RUSTFLAGS=--cfg fuzzing -Cdebuginfo=1 -Cforce-frame-pointers Step #31 - "compile-libfuzzer-undefined-x86_64": --------------------------------------------------------------- Step #31 - "compile-libfuzzer-undefined-x86_64": + mkdir build Step #31 - "compile-libfuzzer-undefined-x86_64": + cd build Step #31 - "compile-libfuzzer-undefined-x86_64": + cmake .. -DBUILD_SHARED=OFF -DBUILD_MIXED=ON Step #31 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Step #31 - "compile-libfuzzer-undefined-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #31 - "compile-libfuzzer-undefined-x86_64": CMake. Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #31 - "compile-libfuzzer-undefined-x86_64": CMake that the project does not need compatibility with older versions. Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": -- The C compiler identification is Clang 18.1.8 Step #31 - "compile-libfuzzer-undefined-x86_64": -- The CXX compiler identification is Clang 18.1.8 Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compiler ABI info Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compiler ABI info - done Step #31 - "compile-libfuzzer-undefined-x86_64": -- Check for working C compiler: /usr/local/bin/clang - skipped Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compile features Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting C compile features - done Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compiler ABI info Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compiler ABI info - done Step #31 - "compile-libfuzzer-undefined-x86_64": -- Check for working CXX compiler: /usr/local/bin/clang++ - skipped Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compile features Step #31 - "compile-libfuzzer-undefined-x86_64": -- Detecting CXX compile features - done Step #31 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): Step #31 - "compile-libfuzzer-undefined-x86_64": The OLD behavior for policy CMP0042 will be removed from a future version Step #31 - "compile-libfuzzer-undefined-x86_64": of CMake. Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64": The cmake-policies(7) manual explains that the OLD behaviors of all Step #31 - "compile-libfuzzer-undefined-x86_64": policies are deprecated and that a policy should be set to OLD only under Step #31 - "compile-libfuzzer-undefined-x86_64": specific short-term circumstances. Projects should be ported to the NEW Step #31 - "compile-libfuzzer-undefined-x86_64": behavior and not rely on setting a policy to OLD. Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": -- Using included inchi library. Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) Step #31 - "compile-libfuzzer-undefined-x86_64": CMake Warning at CMakeLists.txt:164 (message): Step #31 - "compile-libfuzzer-undefined-x86_64": libxml2 not found - disabling CML support! Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for conio.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for conio.h - not found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/time.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/time.h - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for time.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for time.h - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for strings.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for strings.h - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for regex.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for regex.h - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for C++ include sstream Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for C++ include sstream - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for rint Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for rint - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for snprintf Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for snprintf - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for sranddev Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for sranddev - not found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for strcasecmp Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for strcasecmp - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for strncasecmp Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for strncasecmp - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for xdrstdio_create Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for xdrstdio_create - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for dlopen in dl Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for dlopen in dl - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/types.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for sys/types.h - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for stdint.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for stdint.h - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for stddef.h Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for stddef.h - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- Check size of clock_t Step #31 - "compile-libfuzzer-undefined-x86_64": -- Check size of clock_t - done Step #31 - "compile-libfuzzer-undefined-x86_64": -- Performing Test SCANDIR_NEEDS_CONST Step #31 - "compile-libfuzzer-undefined-x86_64": -- Performing Test SCANDIR_NEEDS_CONST - Failed Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR filesystem iostreams unit_test_framework) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. Step #31 - "compile-libfuzzer-undefined-x86_64": -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find RapidJSON (missing: RAPIDJSON_INCLUDE_DIRS) (Required is at least version "1.1.0") Step #31 - "compile-libfuzzer-undefined-x86_64": -- Downloaded RapidJSON to /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818. Step #31 - "compile-libfuzzer-undefined-x86_64": -- JSON formats will be supported. Using RapidJSON 7c73dd7de7c4f14379b781418c6e947ad464c818 at /src/openbabel/external/rapidjson-7c73dd7de7c4f14379b781418c6e947ad464c818/include Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Cairo (missing: CAIRO_LIBRARIES CAIRO_INCLUDE_DIRS) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Cairo. PNG output will NOT be supported. Step #31 - "compile-libfuzzer-undefined-x86_64": -- Found Perl: /usr/bin/perl (found version "5.30.0") Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR system) (Required is at least version "1.45.0") Step #31 - "compile-libfuzzer-undefined-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD Step #31 - "compile-libfuzzer-undefined-x86_64": -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success Step #31 - "compile-libfuzzer-undefined-x86_64": -- Found Threads: TRUE Step #31 - "compile-libfuzzer-undefined-x86_64": -- Could NOT find Boost (missing: Boost_INCLUDE_DIR program_options iostreams) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for getopt Step #31 - "compile-libfuzzer-undefined-x86_64": -- Looking for getopt - found Step #31 - "compile-libfuzzer-undefined-x86_64": -- GUI will not be built Step #31 - "compile-libfuzzer-undefined-x86_64": CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Step #31 - "compile-libfuzzer-undefined-x86_64": Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules Step #31 - "compile-libfuzzer-undefined-x86_64": are removed. Run "cmake --help-policy CMP0148" for policy details. Use Step #31 - "compile-libfuzzer-undefined-x86_64": the cmake_policy command to set the policy and suppress this warning. Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64": Call Stack (most recent call first): Step #31 - "compile-libfuzzer-undefined-x86_64": test/CMakeLists.txt:233 (include) Step #31 - "compile-libfuzzer-undefined-x86_64": This warning is for project developers. Use -Wno-dev to suppress it. Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": -- Found PythonInterp: /usr/local/bin/python (found version "3.10.14") Step #31 - "compile-libfuzzer-undefined-x86_64": CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Step #31 - "compile-libfuzzer-undefined-x86_64": Compatibility with CMake < 3.5 will be removed from a future version of Step #31 - "compile-libfuzzer-undefined-x86_64": CMake. Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64": Update the VERSION argument value or use a ... suffix to tell Step #31 - "compile-libfuzzer-undefined-x86_64": CMake that the project does not need compatibility with older versions. Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": -- Configuring done (4.6s) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Generating done (0.1s) Step #31 - "compile-libfuzzer-undefined-x86_64": -- Build files have been written to: /src/openbabel/build Step #31 - "compile-libfuzzer-undefined-x86_64": ++ nproc Step #31 - "compile-libfuzzer-undefined-x86_64": + make -j 32 Step #31 - "compile-libfuzzer-undefined-x86_64": [ 0%] Generating atomtyp.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 0%] Generating bondtyp.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating phmodeldata.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating resdata.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating torlib.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating types.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 1%] Generating atomizationenergies.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 2%] Generating spacegroups.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 2%] Generating ringtyp.h Step #31 - "compile-libfuzzer-undefined-x86_64": [ 2%] Built target data_headers Step #31 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/grid.cpp:24: Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 82 | _ival=nullptr; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/griddata.cpp:27: Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 297 | if (!IsNearZero(val[2])) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 826 | if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #31 - "compile-libfuzzer-undefined-x86_64": 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1143 | if (IsNearZero(v1.length(), 1.0e-3) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1144 | || IsNearZero(v2.length(), 1.0e-3)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/forcefield.cpp:34: Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 118 | if (_ival) delete [] _ival; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 482 | rab = OBForceField::VectorLengthDerivative(da, db); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 1523 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 1539 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 1572 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1180 | rl.SetFixAtoms(fixed); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1193 | combinations *= rotor->GetResolution().size(); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1301 | rl.SetFixAtoms(fixed); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1444 | rl.SetFixAtoms(fixed); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1457 | combinations *= rotor->GetResolution().size(); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1622 | rl.SetFixAtoms(fixed); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1635 | combinations *= rotor->GetResolution().size(); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1685 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1719 | for (unsigned int j = 0; j < rotor->GetResolution(/src/openbabel/src/mol.cpp:2788:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2788).si | if (atom->ze(); GetVector() != VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": | j++) ^ Step #31 - "compile-libfuzzer-undefined-x86_64": { Step #31 - "compile-libfuzzer-undefined-x86_64":  |  ^/src/openbabel/include/openbabel/math/vector3.h Step #31 - "compile-libfuzzer-undefined-x86_64": :278:5/src/openbabel/include/openbabel/rotor.h::449 :note: 5: 'operator!=' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": note: 'GetResolution' has been explicitly marked deprecated here 278 | Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | O B _ D EPORBEC_ADTEEPD_MRSGE(C/src/openbabel/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 310 | " if (bonUse vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": | d ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 2/src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define AOB_DE PRECATED_MS== TVEZDe_rMoS G|(|" Sve1e G=G(msg) [[=etTorsionVad VZlues()")e Step #31 - "compile-libfuzzer-undefined-x86_64": e|  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_pDEPRECATED_MSG(msg) [[drecatedro) { Step #31 - "compile-libfuzzer-undefined-x86_64": | (m ^s Step #31 - "compile-libfuzzer-undefined-x86_64": eprecated(msg)]g)]] Step #31 - "compile-libfuzzer-undefined-x86_64": | ] ^ Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": | /src/openbabel/include/openbabel/math/vector3.h:273:5: note:  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1720 |  'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsAppro if (IsNex() insar(worstE, bestE, 1.0e-3)) Step #31 - "compile-libfuzzer-undefined-x86_64": | tead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3:  note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #dnote: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: efine OB_DEPRECATED_MSG(msg) [[deprecexpanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #deatedfine OB_DEP(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": RECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1721 | weight = 1 / rotor->GetResolution().size(); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2803 | if (!hasX && !IsNearZero(atom->x())) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | /src/openbabel/src/builder.cpp OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": :310:34: /src/openbabel/include/openbabel/obutil.h:warning: 197:3'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]: Step #31 - "compile-libfuzzer-undefined-x86_64":  note: 310 | 'IsNearZero' has been explicitly marked deprecated here  Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | iOf (bond2 == VZero || v1 == VZeroB) _{DE Step #31 - "compile-libfuzzer-undefined-x86_64": P RE| CA ^T Step #31 - "compile-libfuzzer-undefined-x86_64": ED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^/src/openbabel/include/openbabel/math/vector3.h Step #31 - "compile-libfuzzer-undefined-x86_64": :273:5:/src/openbabel/build/include/openbabel/babelconfig.h :37:note: 29:'operator==' has been explicitly marked deprecated here  Step #31 - "compile-libfuzzer-undefined-x86_64":  note: expanded from macro 'OB_DEPRECATED'273 | Step #31 - "compile-libfuzzer-undefined-x86_64": 37O | B _ D E P#RdEeCAfiTnEeD _OMBS_GD(E"PURsEeC AvTeEctDo r[3[:d:eIpsrAepcpartoexd(]]) Step #31 - "compile-libfuzzer-undefined-x86_64": i| ns ^t Step #31 - "compile-libfuzzer-undefined-x86_64": ead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(m/src/openbabel/src/mol.cpps:g2805): 23[:[ depwarning: rec'IsNearZero' is deprecated [-Wdeprecated-declarations]at Step #31 - "compile-libfuzzer-undefined-x86_64": e d(m2805s | g ) ] ]  Step #31 - "compile-libfuzzer-undefined-x86_64": | i ^f Step #31 - "compile-libfuzzer-undefined-x86_64": (!hasY && !IsNearZero(atom->y())) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2826 | if (!hasX && !IsNearZero(atom->x())) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2828 | if (!hasY && !IsNearZero(atom->y())) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:2830:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2830 | if (!hasZ && !IsNearZero(atom->z())) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 359 | if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": :197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | O/src/openbabel/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 361 | else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 |  /src/openbabel/src/forcefield.cpp : 2420#:d9e:f warning: in'IsNearZero' is deprecated [-Wdeprecated-declarations]e Step #31 - "compile-libfuzzer-undefined-x86_64": OB_DEP R2420E | C A T E Di_fM S(GI(smNsega)r Z[e[rdoe(psrceaclaet)e)d ({ms Step #31 - "compile-libfuzzer-undefined-x86_64": g )| ]] ^ Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64":  |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": B_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 430 | if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead/src/openbabel/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2657 | if (IsNear(e_n2, e_n1, 1.0.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^e-7)) { Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38/src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here: Step #31 - "compile-libfuzzer-undefined-x86_64": 189 |  OB_DEPRECATED_MSG("Usenote: IsApexpanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": prox() instead")38 | Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h: 38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECA#dTED_efMSG(msg) [[depriecneated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": O|  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": B_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 432 | else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::I/src/openbabel/src/forcefield.cppsApprox() i:n2725s:t13ead: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2838 | if (IsNear(e_n2, _e_n1, _econv) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3039 | if (IsNear(e_n2, _e_n1, _econv) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/mol.cpp:3252:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3252 | if ((*ringit)->PathSize() == 5) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 65 | OB_DEPRECATED_MSG("Use Size() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DE.PRECAT")ED_MSG(m Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 434 | else if (bond3 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 450 | if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 452 | else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 454 | else if (bond3 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 469 | if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MS/src/openbabel/src/forcefield.cppG:(3735":U9s:e vewarning: cto'IsNearZero' is deprecated [-Wdeprecated-declarations]r3 Step #31 - "compile-libfuzzer-undefined-x86_64": :: I3735s | A p p r oixf( )( IisnNsetaeraZde.r"o)(l Step #31 - "compile-libfuzzer-undefined-x86_64": es n| ggt) ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [h[)d)e /src/openbabel/build/include/openbabel/babelconfig.hp{:r38e Step #31 - "compile-libfuzzer-undefined-x86_64": :c 38a| :t e ^d Step #31 - "compile-libfuzzer-undefined-x86_64": (note: msexpanded from macro 'OB_DEPRECATED_MSG'g) Step #31 - "compile-libfuzzer-undefined-x86_64": ]] /src/openbabel/include/openbabel/obutil.h Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | | :197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: #define ^ Step #31 - "compile-libfuzzer-undefined-x86_64": OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 471 | else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | /src/openbabel/include/openbabel/math/vector3.h:273:5: note: #def'operator==' has been explicitly marked deprecated hereine Step #31 - "compile-libfuzzer-undefined-x86_64": OB_DE273 | PR/src/openbabel/src/mol.cppE:C3274A:T29E:D [[warning: dep'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations]re Step #31 - "compile-libfuzzer-undefined-x86_64": 3274O | B else_D EiPfR E(C(A*TrEiDn_gMiStG)(-">UPsaet hvSeiczteo(r)3 :=:=I s6A) Step #31 - "compile-libfuzzer-undefined-x86_64": pprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG'| cat ^e Step #31 - "compile-libfuzzer-undefined-x86_64": d]] Step #31 - "compile-libfuzzer-undefined-x86_64": | /src/openbabel/include/openbabel/ring.h Step #31 - "compile-libfuzzer-undefined-x86_64": ^: Step #31 - "compile-libfuzzer-undefined-x86_64": 65:5: note: 'PathSize' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 65 | O38B | _ D E P R#EdCeAfTiEnDe_ MOSBG_(D"Use Size() inEsPtReEaCdA"T)ED Step #31 - "compile-libfuzzer-undefined-x86_64": _ M| SG ^( Step #31 - "compile-libfuzzer-undefined-x86_64": msg) [[de/src/openbabel/build/include/openbabel/babelconfig.h:38:38: prenote: expanded from macro 'OB_DEPRECATED_MSG'cated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp/src/openbabel/src/builder.cpp:473:28: :3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3789 | if (IsNearZwarning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": ero(l_ij) |473 | | IsNearZero(l_jk) el) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^se Step #31 - "compile-libfuzzer-undefined-x86_64": if (bond3 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^/src/openbabel/include/openbabel/obutil.h Step #31 - "compile-libfuzzer-undefined-x86_64": :197:/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 3: note: 'IsNearZero' has been explicitly marked deprecated here'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEP 273 | OB_DEPRECATRECATEED_MSG("Use vector3::IsApprox() insteaDd.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h::38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 37:29: 38 | note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": #define OB_DE37 | #define OB_PRECATED_MSG(msgDEPRECATED [[deprec) [[deprecated(msg)ated]] Step #31 - "compile-libfuzzer-undefined-x86_64": ]]|  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ ^ Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3789 | i/src/openbabel/src/mol.cpp:3343:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": f 3343( | I s N e a r Z e rloo(ol_ij) || IsNpeSairzZee r=o ((l*_rjikn)g) {it Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": )->PathSize();/src/openbabel/include/openbabel/obutil.h Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": :197/src/openbabel/include/openbabel/ring.h::365:: 5: note: 'PathSize' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": note: 65 | 'IsNearZero' has been explicitly marked deprecated here OB_DEPRECATED_MSG("Use Size() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3802 | if (IsNearZero(length)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | O/src/openbabel/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": B 494 | if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": _/src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273DEPREC | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecateATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": d(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_D/src/openbabel/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 496 | else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": EPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 498 | else if (bond3 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 514 | if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead./src/openbabel/src/forcefield.cpp:3949:9: ")warning:  Step #31 - "compile-libfuzzer-undefined-x86_64":  'IsNearZero' is deprecated [-Wdeprecated-declarations]|  Step #31 - "compile-libfuzzer-undefined-x86_64":  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 3949 | if (IsNearZero(length/src/openbabel/build/include/openbabel/babelconfig.h_j:i38):)38 :{  Step #31 - "compile-libfuzzer-undefined-x86_64":  note: | expanded from macro 'OB_DEPRECATED_MSG' ^ Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64":  38 | /src/openbabel/include/openbabel/obutil.h: 197 :#3d: note: 'IsNearZero' has been explicitly marked deprecated hereefine OB_DEPRE Step #31 - "compile-libfuzzer-undefined-x86_64": 197C | A T EOBD__DMESPGR(EmsCgATE)D [[deprecat Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^e Step #31 - "compile-libfuzzer-undefined-x86_64": d(m/src/openbabel/build/include/openbabel/babelconfig.h:s37g:)29]: ] Step #31 - "compile-libfuzzer-undefined-x86_64": note: | expanded from macro 'OB_DEPRECATED' ^ Step #31 - "compile-libfuzzer-undefined-x86_64": Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3962 | if (IsNearZero(length_jk)) { Step #31 - "compile-libfuzzer-undefined-x86_64": | /src/openbabel/src/builder.cpp ^ Step #31 - "compile-libfuzzer-undefined-x86_64": :516:28:/src/openbabel/include/openbabel/obutil.h :197:warning: 3: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]note: Step #31 - "compile-libfuzzer-undefined-x86_64":  'IsNearZero' has been explicitly marked deprecated here516 Step #31 - "compile-libfuzzer-undefined-x86_64": | 197 | O B _ D E P R EeClAsTeE Dif Step #31 - "compile-libfuzzer-undefined-x86_64": (| bo ^n Step #31 - "compile-libfuzzer-undefined-x86_64": d2 /src/openbabel/build/include/openbabel/babelconfig.h:=37=: 29V:Z eronote: )expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^37 Step #31 - "compile-libfuzzer-undefined-x86_64": |   #/src/openbabel/include/openbabel/math/vector3.hd:e273f:i5n:e OBnote: _D'operator==' has been explicitly marked deprecated hereEP Step #31 - "compile-libfuzzer-undefined-x86_64": R ECA273T | E D [ [OdBe_pDrEePcRaEtCeAdT]E]D_ Step #31 - "compile-libfuzzer-undefined-x86_64": M S| G( ^ Step #31 - "compile-libfuzzer-undefined-x86_64": "Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #/src/openbabel/src/forcefield.cppd:ef3973i:n9e: OB_warning: DEP'IsNearZero' is deprecated [-Wdeprecated-declarations]RE Step #31 - "compile-libfuzzer-undefined-x86_64": C AT3973E | D _ M S Gi(fm s(gI)s N[e[adreZperreoc(alteendg(tmhs_gj)l])]) Step #31 - "compile-libfuzzer-undefined-x86_64": { | Step #31 - "compile-libfuzzer-undefined-x86_64":  ^| Step #31 - "compile-libfuzzer-undefined-x86_64":  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:518:28:/src/openbabel/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | warning:  #define OB'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]_DEPRECATED [[deprecate Step #31 - "compile-libfuzzer-undefined-x86_64": d 518 | ]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64":  else /src/openbabel/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 3991 | if (IsNeif (abrZoernd3 o=(=t VhZeetrao)) | Step #31 - "compile-libfuzzer-undefined-x86_64": | | Is ^NearZero( Step #31 - "compile-libfuzzer-undefined-x86_64": fab/src/openbabel/include/openbabel/math/vector3.hs:(273t:h5e:t a -note: M_'operator==' has been explicitly marked deprecated herePI Step #31 - "compile-libfuzzer-undefined-x86_64": ) )) 273{ |  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^O Step #31 - "compile-libfuzzer-undefined-x86_64": B_DEP/src/openbabel/include/openbabel/obutil.hR:E197C:A3TE:D _MSGnote: ("'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4067 | if (IsNearZero(length_ji)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4076 | if (IsNearZero(length_jk)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4083 | if (IsNearZero(length_jl)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNUse vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": earZero(l_kl) ) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 520 | else if (bond4 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 533 | if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 535 | else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 537 | else if (bond3 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 539 | else if (bond4 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 564 | if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 566 | else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 568 | else if (bond3 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 570 | else if (bond4 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 572 | else if (bond5 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 660 | if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 718 | if (bond1 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 720 | else if (bond2 == VZero) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1089 | mol.GetFirstAtom()->GetHyb(); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1427 | if (bond1 == VZero) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smilesformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 232 | _vres.push_back(rotor->GetResolution()); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 138 | rotor->SetNumCoords(mol.NumAtoms()*3); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 452 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdlformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 336 | rotor->SetEvalAtoms(eval); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 443 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 355 | rotor->SetDelta(delta); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 428 | OB_DEPRECATED_MSG("Has no effect.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mol2format.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/asciiformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/formats/copyformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MNAformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molreport.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nulformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 22%] Building CXX object src/CMakeFiles/openbabel.dir/formats/painterformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/povrayformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/reportformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 23%] Building CXX object src/CMakeFiles/openbabel.dir/formats/svgformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/textformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/titleformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 24%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acesformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 371 | if (!IsNearZero(pcharge)) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/abinitformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/adfformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 25%] Building CXX object src/CMakeFiles/openbabel.dir/formats/aoforceformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/castepformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crystal09format.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 26%] Building CXX object src/CMakeFiles/openbabel.dir/formats/daltonformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dmolformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fchkformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 27%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhiaimsformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gaussformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 28%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausscubeformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/adfformat.cpp:795:18: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 795 | t41Data->SetLimits( gd.startPoint, gd.xAxis, gd.yAxis, gd.zAxis ); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 111 | OB_DEPRECATED_MSG("Use vector version instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gausszmatformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gulpformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 29%] Building CXX object src/CMakeFiles/openbabel.dir/formats/hinformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/jaguarformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/molproformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 30%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mopacformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/nwchemformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 5 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pwscfformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 589 | gd->GetOriginVector(origin); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 31%] Building CXX object src/CMakeFiles/openbabel.dir/formats/qchemformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/siestaformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/turbomoleformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 32%] Building CXX object src/CMakeFiles/openbabel.dir/formats/vaspformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xsfformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 34 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/zindoformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 33%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gamessukformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/orcaformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/APIInterface.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 34%] Building CXX object src/CMakeFiles/openbabel.dir/formats/CSRformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/PQSformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 321 | quadrupole.Set(i[0], i[1], value); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 322 | quadrupole.Set(i[1], i[0], value); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] Step #31 - "compile-libfuzzer-undefined-x86_64": 310 | else if (vs[0][0] == '2') Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/MCDLformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 35%] Building CXX object src/CMakeFiles/openbabel.dir/formats/alchemyformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/acrformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/amberformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 36%] Building CXX object src/CMakeFiles/openbabel.dir/formats/balstformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/bgfformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/boxformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 37%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacaoformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cacheformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/carformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 38%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cccformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chem3dformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawcdx.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 39%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemdrawct.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemkinformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/chemtoolformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 40%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cifformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cofformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/crkformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 51 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 41%] Building CXX object src/CMakeFiles/openbabel.dir/formats/cssrformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/dlpolyformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/exyzformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 42%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastsearchformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fastaformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/featformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 43%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fhformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fingerprintformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/fpsformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] Step #31 - "compile-libfuzzer-undefined-x86_64": 911 | switch(pRD->ReactionType) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] Step #31 - "compile-libfuzzer-undefined-x86_64": 990 | switch(pRD->ReactionType) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 44%] Building CXX object src/CMakeFiles/openbabel.dir/formats/freefracformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/ghemicalformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/gromos96format.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 45%] Building CXX object src/CMakeFiles/openbabel.dir/formats/groformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lmpdatformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/lpmdformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 46%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mdffformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmcifformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mmodformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/moldenformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 47%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpdformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/mpqcformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msiformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 48%] Building CXX object src/CMakeFiles/openbabel.dir/formats/msmsformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/opendxformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/outformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/mdffformat.cpp:135:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] Step #31 - "compile-libfuzzer-undefined-x86_64": 135 | string path = (found == string::npos) ? "" : path.substr(0, found); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~ ^~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 49%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pcmodelformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pdbqtformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pointcloudformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 50%] Building CXX object src/CMakeFiles/openbabel.dir/formats/posformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/pqrformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rinchiformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 51%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rsmiformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/rxnformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/shelxformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 52%] Building CXX object src/CMakeFiles/openbabel.dir/formats/smileyformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 9 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/stlformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 275 | gd->GetOriginVector(origin); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/thermoformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 53%] Building CXX object src/CMakeFiles/openbabel.dir/formats/tinkerformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/unichemformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/viewmolformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 54%] Building CXX object src/CMakeFiles/openbabel.dir/formats/wlnformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xedformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xyzformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 55%] Building CXX object src/CMakeFiles/openbabel.dir/formats/yasaraformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/rxnformat.cpp:262:25: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 262 | OBAtom *atm = pmol->GetFirstAtom(); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/mol.h:287:5: note: 'GetFirstAtom' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 287 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/genbankformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/formats/xtcformat.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] Step #31 - "compile-libfuzzer-undefined-x86_64": 158 | switch (chirality) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 56%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cansmidescriptor.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/cmpdfilter.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/groupcontrib.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 57%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/filters.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/inchidescriptor.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/descriptors/smartsdescriptors.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/yasaraformat.cpp:571:7: warning: 'snprintf' will always be truncated; specified size is 4, but format string expands to at least 5 [-Wformat-truncation] Step #31 - "compile-libfuzzer-undefined-x86_64": 571 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 58%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger2.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/finger3.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprints/fingerecfp.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:703:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #31 - "compile-libfuzzer-undefined-x86_64": 703 | if (fabs(lf) > MAXABS) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #31 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:716:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #31 - "compile-libfuzzer-undefined-x86_64": 716 | if (fabs(lf) > MAXABS) {1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64":  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #31 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:729:24: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #31 - "compile-libfuzzer-undefined-x86_64": 729 | if (fabs(lf) > MAXABS) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~ ^~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #31 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:755:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #31 - "compile-libfuzzer-undefined-x86_64": 755 | (float)maxint[2] - (float)minint[2] >= MAXABS) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #31 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:754:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #31 - "compile-libfuzzer-undefined-x86_64": 754 | (float)maxint[1] - (float)minint[1] >= MAXABS || Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #31 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:753:50: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] Step #31 - "compile-libfuzzer-undefined-x86_64": 753 | if ((float)maxint[0] - (float)minint[0] >= MAXABS || Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~ ^~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/formats/xtcformat.cpp:32:23: note: expanded from macro 'MAXABS' Step #31 - "compile-libfuzzer-undefined-x86_64": 32 | #define MAXABS INT_MAX-2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~^~ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 59%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldgaff.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldghemical.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefieldmmff94.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 60%] Building CXX object src/CMakeFiles/openbabel.dir/forcefields/forcefielduff.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addfilename.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addinindex.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 61%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addpolarh.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/addnonpolarh.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": In file included from /src/openbabel/src/descriptors/inchidescriptor.cpp:24: Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] Step #31 - "compile-libfuzzer-undefined-x86_64": 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] Step #31 - "compile-libfuzzer-undefined-x86_64": 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning Step #31 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/canonical.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 62%] Building CXX object src/CMakeFiles/openbabel.dir/ops/changecell.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delpolarh.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/delnonpolarh.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 63%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen2D.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/fillUC.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/forcefield.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 64%] Building CXX object src/CMakeFiles/openbabel.dir/ops/gen3d.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/largest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/loader.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 65%] Building CXX object src/CMakeFiles/openbabel.dir/ops/neutralize.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opsplit.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 344 | if (IsNearZero(rab, 1.0e-3)) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/optransform.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 441 | if (IsNearZero(rab, 1.0e-3)) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 66%] Building CXX object src/CMakeFiles/openbabel.dir/ops/partialcharges.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 515 | rab = OBForceField::VectorLengthDerivative(da, db); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 1523 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 519 | if (IsNearZero(rab, 1.0e-3)) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/readconformers.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/sort.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 67%] Building CXX object src/CMakeFiles/openbabel.dir/ops/opisomorph.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/ophighlight.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/ops/xout.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 68%] Building CXX object src/CMakeFiles/openbabel.dir/charges/eem.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/gasteiger.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 169 | pFF->UpdateCoordinates(molCopy); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 187 | pFF->UpdateCoordinates(molCopy); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/none.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 69%] Building CXX object src/CMakeFiles/openbabel.dir/charges/mmff94.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/charges/fromfile.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 70%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 71%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 72%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 73%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 74%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] Step #31 - "compile-libfuzzer-undefined-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ~~~~~~~~~~~ ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here Step #31 - "compile-libfuzzer-undefined-x86_64": 1236 | static const float dashpattern[] = {5., 5.}; Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning Step #31 - "compile-libfuzzer-undefined-x86_64": 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 9 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/stereo/perception.cpp:2401:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2401 | if (IsNearZero(v1.length(), 1.0e-3) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/src/stereo/perception.cpp:2402:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 2402 | || IsNearZero(v2.length(), 1.0e-3)) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 197 | OB_DEPRECATED Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' Step #31 - "compile-libfuzzer-undefined-x86_64": 37 | #define OB_DEPRECATED [[deprecated]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": 1 warning generated. Step #31 - "compile-libfuzzer-undefined-x86_64": 4 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 75%] Linking CXX static library libopenbabel.a Step #31 - "compile-libfuzzer-undefined-x86_64": [ 75%] Built target openbabel Step #31 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 76%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 77%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 77%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 78%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 79%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 80%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 81%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 82%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 83%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:96:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 96 | OB_255AS | // / \  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": SERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoord/src/openbabel/test/stereoperceptiontest.cppina:tes270:21(: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #31 - "compile-libfuzzer-undefined-x86_64": 270 | // / ) ),\  Step #31 - "compile-libfuzzer-undefined-x86_64": | 6 ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 0.0, 1.0)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATE/src/openbabel/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #31 - "compile-libfuzzer-undefined-x86_64": 285 | // D \  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:287:21: warning: _backslash and newline separated by space [-Wbackslash-newline-escape] Step #31 - "compile-libfuzzer-undefined-x86_64": 287 | // MSG( "\ Use IsAp Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": prox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #31 - "compile-libfuzzer-undefined-x86_64": 310 | // \  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:134:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 134 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instea/src/openbabel/test/stereotest.cpp:102:13:d") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define Owarning: B_DEPR5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #31 - "compile-libfuzzer-undefined-x86_64": 102 | switch (units.Eat(i)C.AtyTEpD_eM) S{G Step #31 - "compile-libfuzzer-undefined-x86_64": | (msg ^~~~~~~~~~~~~~~~) [[depr Step #31 - "compile-libfuzzer-undefined-x86_64": e/src/openbabel/test/stereoperceptiontest.cpp:432:c10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] Step #31 - "compile-libfuzzer-undefined-x86_64": 432 | // \  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": ated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/rotortest.cpp:140:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 140 | OB_ASSERT(IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 0.0, 1.0));  Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] Step #31 - "compile-libfuzzer-undefined-x86_64": 132 | switch (units.at(i).type) { Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^~~~~~~~~~~~~~~~ Step #31 - "compile-libfuzzer-undefined-x86_64": [ 87%] Linking CXX executable ../bin/fuzz_obconversion_smiles Step #31 - "compile-libfuzzer-undefined-x86_64": [ 88%] Linking CXX executable ../bin/fuzz_obconversion_sdf Step #31 - "compile-libfuzzer-undefined-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 90%] Linking CXX executable ../bin/obabel Step #31 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 90%] Linking CXX executable ../bin/roundtrip Step #31 - "compile-libfuzzer-undefined-x86_64": [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 90%] Linking CXX executable ../bin/fuzz_convert Step #31 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 3 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 94%] Built target fuzz_obconversion_sdf Step #31 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 94%] Built target fuzz_obconversion_smiles Step #31 - "compile-libfuzzer-undefined-x86_64": [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 96%] Built target obabel Step #31 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 97%] Built target roundtrip Step #31 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": 2 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 97%] Built target fuzz_convert Step #31 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:190:14: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 190 | x = m2.Get( i, j ); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:201:10: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 201 | m3.Set(i,j, m2(i,j) ); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:325:16: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 325 | Diagonal.Set(i, j, 0.0); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:326:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 326 | Diagonal.Set(0, 0, randomizer.NextFloat()); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:327:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:327:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 327 | Diagonal.Set(1, 1, Diagonal.Get(0,0)+fabs(randomizer.NextFloat())); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:328:12: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:328:31: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 328 | Diagonal.Set(2, 2, Diagonal.Get(1,1)+fabs(randomizer.NextFloat())); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:346:51: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:346:70: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 346 | VERIFY( IsNegligible( eigenvals[j] - Diagonal.Get(j,j), Diagonal.Get(2,2) ) ); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:360:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:360:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 360 | rnd.Set(0,1, rnd.Get(1,0)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:361:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:361:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 361 | rnd.Set(0,2, rnd.Get(2,0)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:362:7: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:362:20: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 362 | rnd.Set(1,2, rnd.Get(2,1)); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/math.cpp:376:39: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 376 | VERIFY( compare( shouldBeDiagonal.Get(j,j), eigenvals[j] ) ); Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 171 | OB_DEPRECATED_MSG("use the constant operator() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:78:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 78 | if (IsNear(logP , 1.4008)) { // value from JOELib2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:85:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 85 | if (IsNear(psa , 29.46)) { // value from JOELib2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:95:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 95 | if (IsNear(logP, 2.5815)) { // Value from JOELib2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:102:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 102 | if (IsNear(psa, 0.0)) { // Value from JOELib2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:112:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 112 | if (IsNear(logP, 2.0264)) { // JOELib2 = 1.9534, more H added on N Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/logp_psa.cpp:119:7: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 119 | if (IsNear(psa, 29.1)) { // Value from JOELib2 Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 6 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:125:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 125 | if ( IsNear(a, atof(vs[0].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:129:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 129 | if ( IsNear(b, atof(vs[1].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:133:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 133 | if ( IsNear(c, atof(vs[2].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:138:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 138 | if ( IsNear(alpha, atof(vs[3].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:142:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 142 | if ( IsNear(beta, atof(vs[4].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:146:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 146 | if ( IsNear(gamma, atof(vs[5].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:155:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 155 | if ( IsNear(a, cell2.GetA(), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:159:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 159 | if ( IsNear(b, cell2.GetB(), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:163:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 163 | if ( IsNear(c, cell2.GetC(), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:168:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 168 | if ( IsNear(alpha, cell2.GetAlpha(), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:172:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 172 | if ( IsNear(beta, cell2.GetBeta(), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:176:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 176 | if ( IsNear(gamma, cell2.GetGamma(), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:208:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 208 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:212:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 212 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:216:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 216 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:232:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 232 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:236:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 236 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:240:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 240 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:256:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 256 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:260:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 260 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:264:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 264 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:280:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 280 | if ( IsNear(tmpcoords[0], atof(vs[0].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:284:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 284 | if ( IsNear(tmpcoords[1], atof(vs[1].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/test/unitcell.cpp:288:10: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] Step #31 - "compile-libfuzzer-undefined-x86_64": 288 | if ( IsNear(tmpcoords[2], atof(vs[2].c_str()), 1.0e-3) ) Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here Step #31 - "compile-libfuzzer-undefined-x86_64": 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": /src/openbabel/build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' Step #31 - "compile-libfuzzer-undefined-x86_64": 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] Step #31 - "compile-libfuzzer-undefined-x86_64": |  ^ Step #31 - "compile-libfuzzer-undefined-x86_64": 17 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": 24 warnings generated. Step #31 - "compile-libfuzzer-undefined-x86_64": [100%] Linking CXX executable ../bin/test_runner Step #31 - "compile-libfuzzer-undefined-x86_64": [100%] Built target test_runner Step #31 - "compile-libfuzzer-undefined-x86_64": + cp bin/fuzz_convert bin/fuzz_obconversion_sdf bin/fuzz_obconversion_smiles /workspace/out/libfuzzer-undefined-x86_64/ Finished Step #31 - "compile-libfuzzer-undefined-x86_64" Starting Step #32 - "build-check-libfuzzer-undefined-x86_64" Step #32 - "build-check-libfuzzer-undefined-x86_64": Already have image (with digest): gcr.io/cloud-builders/docker Step #32 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmptwg_ua6x/fuzz_obconversion_sdf Step #32 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmptwg_ua6x/fuzz_obconversion_smiles Step #32 - "build-check-libfuzzer-undefined-x86_64": INFO: performing bad build checks for /tmp/not-out/tmptwg_ua6x/fuzz_convert Finished Step #32 - "build-check-libfuzzer-undefined-x86_64" Starting Step #33 Step #33: Already have image (with digest): gcr.io/oss-fuzz-base/base-runner Finished Step #33 Starting Step #34 Step #34: Already have image: gcr.io/oss-fuzz/openbabel Step #34: adding: fuzz_convert (deflated 72%) Step #34: adding: fuzz_obconversion_sdf (deflated 72%) Step #34: adding: fuzz_obconversion_smiles (deflated 72%) Step #34: adding: llvm-symbolizer (deflated 66%) Finished Step #34 Starting Step #35 Step #35: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #35: % Total % Received % Xferd Average Speed Time Time Time Current Step #35: Dload Upload Total Spent Left Speed Step #35: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160 0 0 100 160 0 881 --:--:-- --:--:-- --:--:-- 883 Finished Step #35 Starting Step #36 Step #36: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #36: % Total % Received % Xferd Average Speed Time Time Time Current Step #36: Dload Upload Total Spent Left Speed Step #36: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 39.9M 0 0 100 39.9M 0 93.9M --:--:-- --:--:-- --:--:-- 94.0M Finished Step #36 Starting Step #37 Step #37: Already have image (with digest): gcr.io/oss-fuzz-base/uploader Step #37: % Total % Received % Xferd Average Speed Time Time Time Current Step #37: Dload Upload Total Spent Left Speed Step #37: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 60 0 0 100 60 0 201 --:--:-- --:--:-- --:--:-- 202 Finished Step #37 Starting Step #38 Step #38: Already have image (with digest): gcr.io/cloud-builders/curl Step #38: % Total % Received % Xferd Average Speed Time Time Time Current Step #38: Dload Upload Total Spent Left Speed Step #38: 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 36 0 0 100 36 0 193 --:--:-- --:--:-- --:--:-- 193 Finished Step #38 Starting Step #39 Step #39: Already have image: gcr.io/oss-fuzz/openbabel Finished Step #39 PUSH DONE